BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488911
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20090.1 | Symbols: | Uncharacterised protein family (UPF00... 1029 0.0
> AT5G20090.1 | Symbols: | Uncharacterised protein family (UPF0041)
| chr5:6787002-6788654 REVERSE LENGTH=714
Length=714
Score = 1029 bits (557), Expect = 0.0
Identities = 651/693 (94%), Gaps = 20/693 (3%)
Strand=Plus/Plus
Query 1 AAACCCATTTAGCTTTTGACTTGTG-TGCTC-TC-TCTGC-CTGTCTTAATAATATTCCC 56
||||||||||||||||||||||||| || || || || || ||||| | ||||||||||
Sbjct 1 AAACCCATTTAGCTTTTGACTTGTGTTGTTCTTCGTC-GCTCTGTC-T--TAATATTCCC 56
Query 57 TCAACAACTCGTTTCGTTTGTGGGCA-AAGCTTCTTCGATTTTCCTCTCAGACCAATCGG 115
||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 57 TCACCAACTCGTTTCATTTG-GGG-ACAAGCTTCTTCGATTTTCCTCTCAGACCAATCGG 114
Query 116 G-TTTCGCAT-CGGTCAGGTTAGATATGGCTACATCAAGGTTCCAAGCATTCTTGAACAG 173
| ||||| || | ||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 115 GCTTTCGAATCCCATCA-G-TAGAAATGGCTACATCAAGGTTCCAAGCATTCTTGAACAG 172
Query 174 T-CCAGTCGGCCCTAAAACAACTCATTTCTGGGGGCCTATCGCTAATTGGGGTTTTGTTG 232
| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TCCCA-TTGGCCCAAAAACAACTCATTTCTGGGGGCCTATCGCTAATTGGGGTTTTGTTG 231
Query 233 CTGCTGGTTTGGTGGATATGCAAAAGCCCCCTGAAATGATTTCTGGAAACATGTCCTCAG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 232 CTGCTGGTTTGGTGGATATGCAAAAGCCCCCTGAAATGATTTCTGGAAACATGTCGTCAG 291
Query 293 CTATGTGCGTTTACTCTGCATTGTTCATGAGATTTGCCTGGATGGTGCAACCGCGCAACT 352
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 292 CTATGTGCGTTTACTCTGCATTGTTCATGAGGTTTGCCTGGATGGTGCAACCACGTAACT 351
Query 353 ATCTGCTACTTGCGTGCCATGCATCAAACGAGACTGTACAACTCTATCAGCTCTCACGTT 412
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATTTGCTACTTGCGTGCCATGCATCAAACGAGACTGTACAACTCTATCAGCTCTCACGTT 411
Query 413 GGGCTAGAGCCCAGGGGTATTTATCCTCCAAGAAAGAAGAGGAGAAACCATCTCAGTAAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGGCTAGAGCCCAGGGGTATTTATCCTCCAAGAAAGAAGAGGAGAAACCATCTCAGTAAA 471
Query 473 CCAAAATGAGGAAAGGTTTCTTCGAA-GCTGCTTCAGAATTTGTTCTTGGGAATTACTGA 531
||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct 472 CCAAAATGAGGAAAGGTTTCTTC-AACGCTGCTTCAGAATTTGTTCGTGGGAATTACTGA 530
Query 532 ATCCATCCATTTGATTTTCTTTTGAAACGTGTTT-GTATTGTGTCCCCAAGCTATGGTTG 590
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 531 ATCCATCCATTTGATTTTCTTTCGAAACGTGTTTTGTATTGTGTCCCCAAGCTATGGTTG 590
Query 591 CTTTACTTGTTGGATCGTTCACTAACATTATCTCTTTTGTTTTTATAAGTAACCGCTTGT 650
|||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||
Sbjct 591 CTTTACTTGTTGGATCATTCACTAACATTATATCCTTTGTTTTCATAAGTAACCGCTTGT 650
Query 651 AATAAAATTTGGGACCAGTCGCCAGTCCACATT 683
||||||||||||||||||||| || ||||||||
Sbjct 651 AATAAAATTTGGGACCAGTCGTCATTCCACATT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5