BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488913
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20110.1 | Symbols: | Dynein light chain type 1 family prot... 1221 0.0
> AT5G20110.1 | Symbols: | Dynein light chain type 1 family protein
| chr5:6791487-6793346 REVERSE LENGTH=778
Length=778
Score = 1221 bits (661), Expect = 0.0
Identities = 743/781 (95%), Gaps = 12/781 (2%)
Strand=Plus/Plus
Query 1 ACTCATTTCTGTCTATGACTCTTCGGTATAAATAACGCATATGAGCCACTAAAGAGTTTC 60
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCATTTCTGTCTCTGACTCTTCCGTATAAATAACGCATATGAGCCACTAAAGAGTTTC 60
Query 61 CACAAATATTTTTACGCaaaaaataac--aaa-aatgaatgaagagagacccaaaaagtc 117
|||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 61 CACAAATATTATTACG-AAAAAATAACAAAAACAATGAATGAAGAGAGACCCAAAAAGTC 119
Query 118 gaagaagaaaagTCTCATGAACTTCTACAAATTCTCCATCACTTCGTCGAAACACTCACT 177
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 GAAGAAGAAAAGTCTCATGAACTTCTACAAATTCTCAATCACTTCGTCGAAACACTCACT 179
Query 178 TATAAACCCTAAATCCAAACCAAAAATCCCGATC---ACGCCATCAATATGTCAAGAAGA 234
||||||||||||||||||||||| ||||||||| || |||||||||| |||| ||||
Sbjct 180 CATAAACCCTAAATCCAAACCAAAGATCCCGATCAGTACACCATCAATATCTCAACAAGA 239
Query 235 AGTAGAAGAAAAACCAATCGTCCAATCAAATAAAA--CA-CAAAACCATGTGATGAGAGA 291
|||||||||||||||||||||||| || ||||||| || ||||||||||||||||| ||
Sbjct 240 AGTAGAAGAAAAACCAATCGTCCAGTCGAATAAAAGTCATCAAAACCATGTGATGAGGGA 299
Query 292 CATCTTCGAGTTAGAGACTACTTGTAGTAGAAATAATGAAAGAAAGAAAGGCGGTGGTGC 351
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TATATTCGAGTTAGAGACTACTTGTAGTAGAAATAATGAAAGAAAGAAAGGCGGTGGCGC 359
Query 352 GGCGGAGGAGGGGAGGAAATCGGTGTCTCACGTGGAGAGGAATACGACGGCGAGGATAGA 411
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 360 GGCGGAGGAGGGGAGAAAATCGGTGTCTCACGTGGAGAGGGATACGGCGGCGAGGATAGA 419
Query 412 GGCAGCGGCGGAGATGTTGACGGTGAGGATACTAGCTGCGGACATGCCGGGATTTATGCA 471
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 GGCAGCGGCGGAGATGTTGACGGTGAGGATACTAGCTGCGGACATGCCGGGGTTTATGCA 479
Query 472 GGCACATGCGTTTAGGTGTGCGAGAATGACTTTAGATAGTTTGGAGAAGTTTAGTTCGAA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCACATGCGTTTAGGTGTGCGAGAATGACTTTAGATAGTTTGGAGAAGTTTAGTTCGAA 539
Query 532 GCACATGGCTTTCAATCTCAAGAAGGAATTTGACAAAGGGTATGGACCAGCATGGCATTG 591
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GCACATGGCTTTCAATCTCAAGAAGGAGTTTGACAAAGGGTATGGACCAGCATGGCATTG 599
Query 592 CATAGTGGGATCAAGTTTCGGGTCCTTCGTGACACATTCGACAGGTTGTTTTATTTATTT 651
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 600 CATAGTGGGATCAAGTTTCGGGTCGTTTGTGACACATTCGACAGGTTGTTTTATTTATTT 659
Query 652 CTCAATGGACAAACTCTACATTCTCCTCTTCAAAACCAAAGTTCGTCCTGCTTCTCCCCA 711
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTCAATGGACAAACTCTACGTTCTCCTCTTCAAAACCAAAGTTCGTCCTGCTTCTCCCCA 719
Query 712 TTGATTTTGTTTCTTTAGGTTGTAACAAACTTATACCAATCGTAATCAAAAGGCATACTG 771
|||||||| || |||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 720 TTGATTTTCTT-CTTTAGGTTGTAACAA-CTTATACCAATGGTAATCAAAAGGCTTACTG 777
Query 772 T 772
|
Sbjct 778 T 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5