BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488915
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20130.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1118 0.0
> AT5G20130.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6797440-6798899
FORWARD LENGTH=853
Length=853
Score = 1118 bits (605), Expect = 0.0
Identities = 743/805 (92%), Gaps = 27/805 (3%)
Strand=Plus/Plus
Query 1 ATTGTGGTGGGATAAGGGAGA-G--GATAGA--GATGGGACACGTAATGAGGCTGCTGAT 55
||||||||||||||||||||| | || ||| |||||||||||||| |||||| ||||
Sbjct 12 ATTGTGGTGGGATAAGGGAGAGGAAGAGAGAGCGATGGGACACGTAACGAGGCTATTGAT 71
Query 56 AAACCCTTCTTCTTCCTCCTCGCCTCTTCTCCACCTCCGTTGTTCCCACCGGACTCTTGA 115
||||||||| || | |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 72 AAACCCTTCGTC-T--TCCTCGCCACTTCTCCACCTCCGTTGTTGCCACCGGACTCTTGA 128
Query 116 CCCCAACTCTGTCTTCTCTCTTCGAACCGCAATTACCAAAAGCAAGGCACGATTCTCTTG 175
||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 129 CCCTAACTCTGTCTTCTCTCTTCGAACCTCAATCACCAAAAGCAAGGGACGATTCTCTTG 188
Query 176 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 248
Query 236 TGGTGGGAAGAAAAATGAGTTTGACAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 295
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 249 TGGTGGGAAGAAGAATGAGTTTGAGAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 308
Query 296 CGGTGGCGGAAA---TGGT--A----GAGGAGGAGGAGGCTGGTTTGGAGGTGGCGGTTG 346
|||||||||||| |||| | ||||||||||||| |||||||||||||| |||||
Sbjct 309 CGGTGGCGGAAATGGTGGTAAAGGTGGAGGAGGAGGAGGTTGGTTTGGAGGTGGTGGTTG 368
Query 347 GTTCAGTGGCGACCATTTCTGGAATGAAGCACAACAGATTGCCTTTACCCTCTTAGCAAT 406
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 369 GTTTAGTGGCGACCATTTCTGGAAAGAGGCACAACAGATTGCCTTTACCCTCTTAGCAAT 428
Query 407 ACTAGTCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 466
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ACTTGCCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 488
Query 467 GTTGTTGTATGCGTTGCGAGGAACACGAGAAGGTTTGACTTCTCTAAGCTCCAAACTCAT 526
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 489 GTTGTTGTATGCGTTGCGAGGAACACGGGAAGGTTTGTCTTCTCTAAGCTCCAAACTCAT 548
Query 527 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAACAAGGAAGG 586
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 549 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAAGAAGGAAGG 608
Query 587 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACAAAATTCTTTA 646
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 609 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACACAATTCTTAA 668
Query 647 AGCCGACTCAAGAAGAAAATATATTTGAGtttttttGTAACATCGAGAATCATGATGAGA 706
||| ||||||||||||| | |||| || ||||||||||||| ||| | | ||| | |
Sbjct 669 AGCTGACTCAAGAAGAATG-AC-TTTGGGTGTTTTTGTAACATCAAGA-TGA-GAT-A-A 722
Query 707 TCAAATGCAATCGACCTTTTCAGATTTGTAATGGAGTATAGGTATTCTTCTGTGAACAAG 766
| | |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 723 T-A--TGCAATCGACCTTTTCAGTTTTGTAATGGAGGATAGGTATT-TTCTGTGAACAAG 778
Query 767 AAAGAGTGACTCTGTTTGTAACTTC 791
|||||||||||||||||||||||||
Sbjct 779 AAAGAGTGACTCTGTTTGTAACTTC 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38479356602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5