BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488918
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20160.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 767 0.0
AT4G22380.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 396 2e-109
AT4G12600.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 235 4e-61
> AT5G20160.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr5:6803782-6805195 REVERSE LENGTH=869
Length=869
Score = 767 bits (415), Expect = 0.0
Identities = 472/499 (95%), Gaps = 6/499 (1%)
Strand=Plus/Plus
Query 216 AGCTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTGGTTATGGCTGCAGATGCTGA 275
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 312 AGCTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTTGTCATGGCTGCAGATGCTGA 371
Query 276 GCCTCTAGAGATTCTTCTTCATCTTCCCTTACTTGCTGAGGATAAGAATGTTCCTTATGT 335
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 372 GCCTCTAGAGATTCTTCTTCATCTTCCCCTACTTGCTGAGGATAAGAATGTTCCTTATGT 431
Query 336 CTTCGTGCCTTCAAAGCAAGCCTTGGGAAGAGCCTGTGGTGTGACTAGACCTGTTATCGC 395
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CTTTGTGCCTTCAAAGCAAGCCTTGGGAAGAGCCTGTGGTGTGACTAGACCTGTTATCGC 491
Query 396 TTGTTCAGTCACATCTAATGAAGCTAGTCAATTGAAATCACAGATCCAGCATCTCAAGGA 455
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 492 TTGTTCAGTCACATCTAACGAAGCTAGTCAATTGAAATCACAGATTCAACATCTCAAGGA 551
Query 456 TGCTATTGAGAAGCTTCTTATCTAAGGCCTTCTCCG-ATTGCTTGCTCGGTATGATGGGT 514
|||||||||||||||||| ||||||||| ||||| | |||| ||||||||||||||||||
Sbjct 552 TGCTATTGAGAAGCTTCTGATCTAAGGCATTCTCTGAATTGATTGCTCGGTATGATGGGT 611
Query 515 CTCCGCGAATGGGAAGGCTTTGACTGAAGTTTTGTTTAGGCAACTACCAAATCAAAAACC 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CTCCGCGAATGGGAAGGCTTTGACTGAAGTTTTGTTTAGGCAACTACCAAATCAAAAACC 671
Query 575 GTCCATGATTCTACTATCTTCACTTAAAGTTTGTAACGTAATTCACTTTTCTGCATTTTC 634
|||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 672 GTCCATTATTCTACTATCTTCTCTTCAAGTTTGTAACGTAATTCACTTTTCTGCAACTTG 731
Query 635 AGTTTCTTAAGAGT--GTGCTGGTTTTTGGTTTTGGTTTGTAGCGAATCATTGTCGT-AT 691
||||||||||| | ||| |||||| ||||||||||||||||||||||||||| || ||
Sbjct 732 -GTTTCTTAAGAATTTGTGTTGGTTTCTGGTTTTGGTTTGTAGCGAATCATTGT-GTTAT 789
Query 692 TTATGAGAACTTGTTTTGA 710
|||| ||||||||||||||
Sbjct 790 TTATAAGAACTTGTTTTGA 808
Score = 351 bits (190), Expect = 4e-96
Identities = 209/218 (96%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 1 AAGCCTAAATTCTCATTCAGAATCTTCAAGCTGAGAAACTCGTAGCCTCTAAAACCCTAA 60
|||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 AAGCCTAAGTTATCATTCAGAATATTCAAGCTGAGAAAGTCGTAGCCTCTAAAACCCTAA 60
Query 61 TCCTCTCTGAAACCCTAGCA-ATCGCAGCTGAAAATGACCGGAGAAGCCGTTAACCCTAA 119
|||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 TCCTCTCTGAAACCCTAG-ACATCGCAGCTGAAAATGACCGGAGAAGTCGTCAACCCTAA 119
Query 120 AGCGTATCCGCTTGCAGATTCTCAGTTATCGATAACGATTCTTGACCTCGTTCAACAAGC 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AGCGTATCCGCTTGCAGATTCTCAGTTATCGATAACAATTCTTGACCTCGTTCAACAAGC 179
Query 180 TACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAG 217
||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAG 217
> AT4G22380.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr4:11811750-11813000 REVERSE LENGTH=756
Length=756
Score = 396 bits (214), Expect = 2e-109
Identities = 383/462 (83%), Gaps = 21/462 (5%)
Strand=Plus/Plus
Query 90 GAAAATGACCGGAGAAGCCGTTAACCCTAAAGCGTATCCGCTT-GCAGATTCTCAG-TTA 147
||| ||||| ||||| | || |||||||| ||||||||| || |||||||||||| ||
Sbjct 75 GAAGATGACGGGAGAGGTAGTGAACCCTAAGGCGTATCCG-TTAGCAGATTCTCAGCTT- 132
Query 148 TCGATAACGATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGT 207
|||||||| || | || || ||||||||||||||||||||||||||||| ||||||||
Sbjct 133 TCGATAACAATAATGGATCTTGTTCAACAAGCTACTAACTACAAGCAGCTTAAGAAGGGA 192
Query 208 GCTAATGAAGCTACGAAGACTCTT-AATCGTGGAATCTCCGAGTTTGTGGTTATGGCTGC 266
|||||||||||||| || || || || ||||||||||| ||||| || |||||||||||
Sbjct 193 GCTAATGAAGCTACCAAAACA-TTGAACCGTGGAATCTCTGAGTTCGTTGTTATGGCTGC 251
Query 267 AGATGCTGAGCCTCTAGAGATTCTTCTTCATCTTCCCTTACTTGCTGAGGATAAGAATGT 326
|||||||| || || |||||||||||||||||||| || ||||| || |||||||||||
Sbjct 252 TGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCTTTGCTTGCCGAAGATAAGAATGT 311
Query 327 TCCTTATGTCTTCGTGCCTTC-AAAGCAAGCCTTGGGAAGAGCCTGTGGTGTGACTAGAC 385
|| ||||| || || ||||| ||| ||||| ||||||||||| ||||| || || ||||
Sbjct 312 GCCATATGTGTTTGTACCTTCGAAA-CAAGCATTGGGAAGAGCATGTGGAGTAACAAGAC 370
Query 386 CTGTTATCGCTTGTTCAGTCACATCTAATGAAGCTAGTCAATTGAAATCACAGATCCAGC 445
||||||| ||||||||||| ||||| ||||| || || || |||||||| ||||| ||||
Sbjct 371 CTGTTATTGCTTGTTCAGTGACATCGAATGAGGCAAGCCAGTTGAAATCGCAGATTCAGC 430
Query 446 ATCTCAAGGATGCTATTGAGAAGCTTCTTATCTAAGGCCTTCTCCGATTGCTTGCTCGGT 505
||||||||||||| ||||||||||| || |||||||| || || | ||| | | |
Sbjct 431 ATCTCAAGGATGCAATTGAGAAGCTCCTGATCTAAGGA-TT-TC---T-GCT--CA-G-T 480
Query 506 ATGATGGGTCTCCGCGAATG-GGAA-GGCTTTGACTGAAGTT 545
|||| | ||||| || |||| |||| |||| |||||||||||
Sbjct 481 ATGAAGAGTCTCTGC-AATGTGGAATGGCTCTGACTGAAGTT 521
> AT4G12600.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr4:7453201-7454515 FORWARD LENGTH=954
Length=954
Score = 235 bits (127), Expect = 4e-61
Identities = 201/236 (85%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 90 GAAAATGACCGG-AGAAGCCGTTAACCCTAAAGCGTATCCGCTT-GCAGATTCTCAGTTA 147
||| |||| ||| ||||| || |||||||| ||||||||| || || ||||||||||||
Sbjct 92 GAAGATGA-CGGTAGAAGGAGTGAACCCTAAGGCGTATCCG-TTAGCTGATTCTCAGTTA 149
Query 148 TCGATAACGATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGT 207
||||||||||||||||| || |||||||||||||| || ||||| ||| | ||||| ||
Sbjct 150 TCGATAACGATTCTTGATCTTGTTCAACAAGCTACGAATTACAAACAGTTAAAGAAAGGA 209
Query 208 GCTAATGAAGCTACGAAGACTCTT-AATCGTGGAATCTCCGAGTTTGTGGTTATGGCTGC 266
|||||||||||||| ||||| || || ||||| ||||| ||||| | |||||||||||
Sbjct 210 GCTAATGAAGCTACCAAGACA-TTGAACCGTGGGATCTCTGAGTTCATTGTTATGGCTGC 268
Query 267 AGATGCTGAGCCTCTAGAGATTCTTCTTCATCTTCC-CTTACTTGCTGAGGATAAG 321
||| |||||||||| |||||||||||||||||||| ||| |||||||| ||||||
Sbjct 269 TGATACTGAGCCTCTCGAGATTCTTCTTCATCTTCCTCTT-CTTGCTGAAGATAAG 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5