BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488920

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20165.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   327    4e-89


> AT5G20165.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: 
Protein of unknown function DUF1242 (InterPro:IPR009653). 
| chr5:6805594-6807327 REVERSE LENGTH=783
Length=783

 Score =  327 bits (177),  Expect = 4e-89
 Identities = 206/219 (94%), Gaps = 5/219 (2%)
 Strand=Plus/Plus

Query  1    GCTTCAAAACCCTAATTTCTGTAGCCATTAGCATCGATTTCAGCTCAAATTCAGATTCAA  60
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  128  GCTTCAAAACCCTAATTTCTCTAGCCATTAGCATCGATTTCAGCTCAACTTCAGATTCAA  187

Query  61   GGAAACAATTATTTTAGCTTCTCAAGTGCTACTTCAGTGATCAGACACAATGTCAGCTTT  120
            |||||||||||  |||||||||||||||   ||||||||||| || ||||||||||||||
Sbjct  188  GGAAACAATTA--TTAGCTTCTCAAGTG---CTTCAGTGATCCGATACAATGTCAGCTTT  242

Query  121  GTTCAATTTCCATTCGTTTCTGACGGTGGTGCTGCTTGTGATCTGCACTTGTACATATCT  180
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  243  GTTCAATTTCCATTCGTTTCTGACGGTGGTGCTGCTTGTGATCTGCACATGCACATATCT  302

Query  181  CAAGATGCAGTTCCCTGCCATTTTGGAGCAGAAAACTGG  219
             ||||||||||||||||||||||| ||||||||||||||
Sbjct  303  GAAGATGCAGTTCCCTGCCATTTTAGAGCAGAAAACTGG  341


 Score =  171 bits (92),  Expect = 7e-42
 Identities = 98/101 (97%), Gaps = 0/101 (0%)
 Strand=Plus/Plus

Query  339  ATTTTTCTGTATGCAAAAGATTCCAAGGGGTTGTTGATGAAACCGGAAGAGTAGAATATT  398
            ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  630  ATTTTTCTGTATGCAAAAGATTCCAAGGGGTTGTTGATGAAACTGAAAGAGTAGAATATT  689

Query  399  ATCCTCTTTGGATTATGGATATGATCTTGTATTTGGAACAA  439
            ||||||||||||||||||||||| |||||||||||||||||
Sbjct  690  ATCCTCTTTGGATTATGGATATGGTCTTGTATTTGGAACAA  730


 Score =  150 bits (81),  Expect = 9e-36
 Identities = 86/88 (98%), Gaps = 1/88 (1%)
 Strand=Plus/Plus

Query  251  ATAGGTGAGCGTTTGAGCCCTTGGGTCTCGGCTGGATGCTTCATGATGGGTGTGTCGATC  310
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  504  ATA-GTGAGCGTTTGAGCCCTTGGGTCTCCGCTGGATGCTTCATGATGGGTGTGTCGATC  562

Query  311  ATTTTCTTTTGAGTGTCAACTTCTTACA  338
            ||||||||||||||||||||||||||||
Sbjct  563  ATTTTCTTTTGAGTGTCAACTTCTTACA  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5