BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488922

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20180.1 | Symbols:  | Ribosomal protein L36 | chr5:6810920-...   662    0.0  


> AT5G20180.1 | Symbols:  | Ribosomal protein L36 | chr5:6810920-6812146 
FORWARD LENGTH=636
Length=636

 Score =  662 bits (358),  Expect = 0.0
 Identities = 406/429 (95%), Gaps = 4/429 (1%)
 Strand=Plus/Plus

Query  1    AAACTCCTCCGTAAAACCCTTTCATTTGCATTTGGGAATCGATCGCTCTTCTTCGTAGTC  60
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  2    AAACTCCTCCGTAAAACCCTTTCATTTGCATTTGGGAATCGATTGCTCTTCTTCGTAGTC  61

Query  61   GCCTTTGAATTCGCAGAGTGAGGAA-CCATGAAGGTGAGATCATCTGTGAAGAAGATGTG  119
            ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct  62   GCCTTTGAATTCGCAGAGTGA-GAAGCAATGAAGGTGAGATCATCTGTGAAGAAGATGTG  120

Query  120  TGAGTTTTGTAAAACAGTGAAACGTCGTGGACGTGTCTATATCATATGTTCTTCCAATCC  179
            |||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||
Sbjct  121  TGAGTTTTGTAAAACAGTGAAACGTCGTGGACGTGTGTATGTTATATGCTCTTCCAATCC  180

Query  180  TAAGCACAAGCAAAGACAAGGGTTCAGCTCCTTTGCTTATGAAGGAATTATACCTTCCCC  239
            ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  181  TAAGCACAAGCAAAGACAAGGGTTCAGTTCCTTTGCTTATGAAGGAATTACACCTTCCCC  240

Query  240  GTTGTT-GTCTGAGTCGATTGCTAGTCAGGAGATGACGAGGCTGCCTGGTCAGGGCATAT  298
             ||||| | ||||| ||||||||||||||||| ||  ||||||||||||||||||  |||
Sbjct  241  TTTGTTTG-CTGAGCCGATTGCTAGTCAGGAGTTGGTGAGGCTGCCTGGTCAGGGGGTAT  299

Query  299  CAGCCGGTCTGGCATCACTTTTACACAAAAGGCCTATGCCAACAGCGTTTTTCGGATGGA  358
            ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  300  CAGCCGGACTGGCATCACTTTTACACAAAAGGCCTATGCCAACAGCGTATTTCGGATGGA  359

Query  359  GGTCAGGTCTTGCATCCATTCTCTTCAAACAAGGAAATTAGGATGTCAGCATTTCCCttt  418
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GGTCTGGTCTTGCATCCATTCTCTTCAAACAAGGAAATTAGGATGTCAGCATTTCCCTTT  419

Query  419  tttttCTTC  427
            || ||||||
Sbjct  420  TTATTCTTC  428


 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 49/51 (96%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  443  TGAAACATTATTGTATATCTCTCCACTTTTACTTTGGTCAGTCATAGGCTC  493
            ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  462  TGAAACATTATTGTATATCTCTCCACTTTTACTTTGGTCAGTCGTATGCTC  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23509580796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5