BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488925
Length=2510
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20200.1 | Symbols: | nucleoporin-related | chr5:6816707-68... 3611 0.0
> AT5G20200.1 | Symbols: | nucleoporin-related | chr5:6816707-6821810
FORWARD LENGTH=2548
Length=2548
Score = 3611 bits (1955), Expect = 0.0
Identities = 2352/2537 (93%), Gaps = 53/2537 (2%)
Strand=Plus/Plus
Query 1 TTGAGAAACGAACACTGAAACAAAGAGAGCTCATGGCCACTGAAGGAGAAGCGACGTTCT 60
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 38 TTGAGAAAGGAACACTGAAACAAAGAGAGTTCATGGCCACTCAAGGAGAAGCGACGTTCT 97
Query 61 CCGCGGCCGCGACCGCGACGGCGACGTCGAGCTATCCGACGGGAGGTGTTGGTGGCAAAT 120
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 98 CCGCGGCCGCGA---CGA---CGACGTCGAGCTATCCGACGGGAGGTGTTGGTGGCAAAT 151
Query 121 TGAAGCGGCAATCCGCGAGGAGGCATTCGGCGACGCCGTATTCTCGACCACCACAGAACC 180
||||||||||||| |||||||||||| ||||||| || |||||||||||| |||||||||
Sbjct 152 TGAAGCGGCAATCGGCGAGGAGGCATGCGGCGACACCTTATTCTCGACCAACACAGAACC 211
Query 181 AGTTACAACGGAGGCCGTGGATCTCGAGAATCGTCGATCCTGCTTATCGGATTATCTCAG 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 212 AGGTACAACGGAGGCCGTGGATCTCGAGAATCGTCGATCCTGCTTATCGGATTATTTCCG 271
Query 241 GCGGCGCTACGAGAATACTTCCATATTTCTTCTCCAAAGCCACCTCCCCTCCTGCTCTTA 300
|||||||||| ||||||||||||||||||||||| || ||| ||||| |||||||||||
Sbjct 272 GCGGCGCTACCAGAATACTTCCATATTTCTTCTCGAACGCCGCCTCCGCTCCTGCTCTTG 331
Query 301 CTG---CTCCAGAGGATCAAGATCAACATCAAGGTGAGTTGCAGAATGGTCCACTA-GAC 356
||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |||
Sbjct 332 CTGCTCCTCCAGAGGATCAAAATCAACATCAAGGTGAGTTGCAGAATAATCCAC-AGGAC 390
Query 357 AATGATACCAGTGTAACCCCAAGTTT-AAATAAACCGGAGTCAGCATCAATTGAAGTGGG 415
|||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 391 AATGATCCCAGTGTAACCCCAA-TTTCAAATAAACCGGAGCCAGCATCAATTGAAGTGGG 449
Query 416 AGGTCCTAGTGGTACAGCAAACGTGAACGAAGGCAATTTCAGTATCAGTGCACAGGGAAG 475
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 450 AGGTCCTAGTGGTACTGCAAACGTGAACGAAGGCAATTTCAGTATCAGTGCACAGAGAAG 509
Query 476 AGGGAAAGCAGCTTTAAATGACGCCGTTGCAATCTCGGAGCTTGAAAGGCTAATGGAAGG 535
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 510 AGGGAAAGCAGCTTTAAATGACGACGTTGCAATCTCGGAGCTTGAAAGGCTAATGGAAGG 569
Query 536 AAAAACATTTTCACAAGCCGAAACTGATCGTCTCATAGAGATAATAAGTTCAAGGGCTAT 595
|||||| ||||||||||| |||| |||||||||||||||||| |||||||| ||||||||
Sbjct 570 AAAAACGTTTTCACAAGCTGAAATTGATCGTCTCATAGAGATGATAAGTTCGAGGGCTAT 629
Query 596 TGATCTACCTGATGTCAAGAGAGACGAGAGAAATTTGGAGATTCCTTTGAGAGAGGGAGC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TGATCTACCTGATGTCAAGAGAGACGAGAGAAATTTGGAGATTCCTTTGAGAGAGGGAGC 689
Query 656 CAAGAAAGATATGTGTTTCTTTGATAAGACAAGAGATCCCATTGGTGTCAAGGATGCTAA 715
||||||| ||||| |||| ||||||||| ||| ||| |||||||||| ||||||||||||
Sbjct 690 CAAGAAAAATATGAGTTTATTTGATAAGGCAAAAGAGCCCATTGGTGGCAAGGATGCTAA 749
Query 716 TAGTGAACTATGGGCTACACCAACCCCACTTGCCAAGTCAATAGTGAGTTGTTTACTTGA 775
||||||| ||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 750 TAGTGAAATATGGGCTACACCAACCCCACTTGCAAAGTCAATA---A------TACTTGA 800
Query 776 CGGAGATAAACAGATACAAGATGAAGTTGGTCTTTCACCGGCAGAACTTGCTAAGGCATA 835
|||||| || | |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 801 CGGAGA-CAA-A-ATACGAGATGAAGTTGGTCTTTCACCGGCAGAACTTGCCAAGGCATA 857
Query 836 TATGGGAGGTCAGACATCATCAAGTAGTTCCCAAGGTTTTGTAGCAAGAAATGAAAAGGA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TATGGGAGGTCAGACATCATCAAGTAGTTCCCAAGGTTTTGTAGCAAGAAATGAAAAGGA 917
Query 896 TTGTTTAGATAGGAGTATGTTTGTAGGAAAATCATCACTTGCATCACCATCAAGCAAGCC 955
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 918 TTGTTTAGATAGGAGTATGCTTGTAGGGAAATCATCACTTGCATCACCATCAAGCAAGCC 977
Query 956 TTCTGCTTGTTGGCCTGGTATCAAGTCAAGTGAGCAATCTGGTTTTGCAACTCCTCAAAG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TTCTGCTTGTTGGCCTGGTATCAAGTCAAGTGAGCAATCTGGTTTTGCAACTCCTCAAAG 1037
Query 1016 CCGAAGAGAAAGCTATGGGCTTCAAAATTTTCCAAGGACCCCATATTCTAGAACCATCCT 1075
|||| |||| ||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1038 CCGACGAGAGAGCTATGGGCTTCAAAATTTTCCAAGGACTCCTTATTCTAGAACCATTCT 1097
Query 1076 TTCAAATTCTAAGTCAAAGTTGATGCAATTGCAGAACGATAGTAGCAAGCGCCTAGGCAA 1135
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1098 TTCAAATTCTAAGTCAAAGTTGATGCAATTGCAGAACGATAGTAGCAAGCACCTAAGCAA 1157
Query 1136 CCTCCAGTCTCCCTCTCAAAGTGTGGAGACAAGATATGGCCAGCTTAGCAAAGGAAGGGA 1195
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1158 CCTCCAGTCTCCCTCTCAAAGTGTGGAGAGAAGATATGGCCAGCTTAGCAAGGGAAGGGA 1217
Query 1196 TGGTGGACTTTTTGGACCCAGTAGAAGATCTCGTCAGAGCTCTATGCCGTCCTTGGTGTC 1255
|||||||||||||||||||||||||||| ||||||||||| | | ||||||| |||||||
Sbjct 1218 TGGTGGACTTTTTGGACCCAGTAGAAGAACTCGTCAGAGCGCCACGCCGTCCATGGTGTC 1277
Query 1256 TCCTTATTCACGACCTTCGCGTGGTATATCTCGCTTTGAAAATTCTTCTATCATGAAGAG 1315
|||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||
Sbjct 1278 TCCTTATTCACGACCTTCCCGTGGTGCATCTCGTTTTGAAAATTCTGCTATCATGAAGAG 1337
Query 1316 CTCTGAAGCAGGGGAATCAAGTTACCTATCTAGGTCCCAGACAACAACTTACGGTAAGCA 1375
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1338 CTCTGAAGCAGGGGAATCAAGTTACCTATCTAGGTCCCAGATAACAACTTATGGTAAGCA 1397
Query 1376 TAAAGAGTCAGAAGTTGGTACCCCGACTGTGCCTACACATTCTAGTCAGATTGCTAGGAC 1435
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1398 TAAAGAGGCAGAAGTTGGTACCCTGACTGTGCCTACACATTCTAGTCAGATTGCTAGGAC 1457
Query 1436 AATATTGGATCACCTTGAACGGACCCAATCCCAATCCACCCCGAAAAATAAATCTGCTGA 1495
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1458 AATATTGGATCACCTTGAACGGACCCAATCCCAATCCACCCCAAAAAATAAAACTGCCGA 1517
Query 1496 GTTAAAGCTTGCCACTTCCTGGAGATATCCACAGTCTTCGAAAACCATTGAACAAAGCAG 1555
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1518 GTTAAAGCTTGCCACTTCCTGGAGACATCCACAGTCTTCGAAAACCGTTGAAAAAAGCAG 1577
Query 1556 CTCGGATGTCAACAATGTGAAAAAGGATGGCTCAGCTAAATTGAATGAAGATATCCAGAA 1615
|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1578 CTCGGACGTCACCAATGTGAAAAAGGATGGCTCAGCTAAATTGCATGAAGATATCCAGAA 1637
Query 1616 CATTTTCTCTCAGAAGCTGTCATCCTCTGTGCTTAAACAACCCGCAACTACCACTGGTGA 1675
||||||||||||||| | | |||||||||| ||||||| ||| |||||||||||||||||
Sbjct 1638 CATTTTCTCTCAGAATCAGCCATCCTCTGTTCTTAAACCACCTGCAACTACCACTGGTGA 1697
Query 1676 CACTCAAAATGGAATGAACAAGACCGCTTCAGTGTCCAATGGAATATTCCGTGGAACACA 1735
|| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1698 CATTCAAAATGGAATGAACAAGACCGCTTCAGCGACAAATGGAATATTCCGTGGAACACA 1757
Query 1736 AGCAGCAAGTC-C--------CGCATTCCAATATGAGTTAGGGAAGCCTAAGGGTTCTCT 1786
|||||||||| | |||| ||||||||||||| ||||||||||||||||||||
Sbjct 1758 AGCAGCAAGTAGCGGTGGTAACGCACTCCAATATGAGTTTGGGAAGCCTAAGGGTTCTCT 1817
Query 1787 TTCCAGAAGCACACGTGATGAGTTGGTTACTTCTTCTCGGGACGCTGCAAAAGCTGTTCC 1846
||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1818 TTCCAGAAGCATGCATGATGAGTTGGGTACTTCTTCTCAGGACGCTGCAAAAGCTGTTCC 1877
Query 1847 CTATTCTTTTGGAGGCGAAACTGCAAATCTCCCCAAACCACCATCTCACTCACTCGGAAA 1906
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1878 CTATTCTTTTGGAGGGGAAACTGCAAATCTCCCCAAACCACCATCTCACTCACTGGGAAA 1937
Query 1907 TAACAAACCGGTACTTCCATCGATCTCAGTAGCCAAGCCCTTCCAAAAATGGGCAGTCCC 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 TAACAAACCGGTACTTCCATCGATCTCAGTAGCCAAGCCCTTCCAAAAATGGGCAGTCCC 1997
Query 1967 TTCGGGCTCAAACGCTGGCTTCACATTCCCGGTCTCTTCATCTGATGGAGCAACATCATC 2026
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1998 TTCGGGTTCAAACGCTGGCTTCACATTCCCGGTCTCTTCATCTGATGGAACAACATCATC 2057
Query 2027 AGAGCCCACAACTCCATCTATCATGCCCTTCACAACAAGCCCAGCAG---CAAGTGGTGG 2083
|||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct 2058 AGAGCCCACAACTCCATCCATCATGCCCTTCACAACAAGCCCACCAGTAGCAAGTGGTGG 2117
Query 2084 TGGTGTTGCCATTACAAATCATCACGAAGCTAGAAAAGATGAAGAGATTCCTCAATTTAG 2143
||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||||
Sbjct 2118 TGGTGTTGCCATTACGAATCATCACGAAGCGAGAAAAGATTACGAGATTCCTCAATTTAG 2177
Query 2144 TTTCGACGGCA--A-CAGAGGAGGAGATAAGTCGCCCCTGGTCTTTTCGTTTCCCTCAAT 2200
||||||||||| | |||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 2178 TTTCGACGGCAGCAACAGAAGAGGAGATAAGTCGCCCCTGGTGTTTTCGTTTCCCTCTGT 2237
Query 2201 GAGCGAAGAGGTGGTCAATGAAGATGATGATGCGAGGTTAGGTATCAAATACACATTTGG 2260
|||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2238 AAGCGAAGAGGTGGTCAGTGAGGATGATGATGCGAGGTTTGGTATCAAATACACATTTGG 2297
Query 2261 GTCAGAAAATCCGGAGAGAATATCGTTCAGCTCAGCAGGAAGTGATGGTGTTTGCTGTTA 2320
||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 2298 GTCAGAAAAGCCGGAGAGGATATCATTCAGCTCAGCAGGAAGTGACGGTGTCTGCTGTTA 2357
Query 2321 AA-GACAAGGACAACGGTCTCTGTCTCTTGCATGTTTTCCAATATAAttt--ttttt-gt 2376
|| ||||||||||||||||| ||| ||||| ||||||||||| | ||||| ||||| ||
Sbjct 2358 AAAGACAAGGACAACGGTCTTTGTTTCTTGTATGTTTTCCAAAAAAATTTCCTTTTTTGT 2417
Query 2377 tgtctcgaattgtttta-cttttttactttgg-gagtagaattttgtGCCTAGATCattg 2434
| |||||||||||||| ||| |||||||| | ||||||||||||||||||||||||| |
Sbjct 2418 TTTCTCGAATTGTTTTTGCTTCTTTACTTTTGAGAGTAGAATTTTGTGCCTAGATCAT-G 2476
Query 2435 -gttttgatttctctattcatttgagatgattggtttcttttttgagtctgttttttATA 2493
|||||||||||| ||||||||||| ||||| ||||||| | || || | ||||||||
Sbjct 2477 AGTTTTGATTTCT--ATTCATTTGAG--GATTGATTTCTTTAT-GAATCCGATTTTTATA 2531
Query 2494 AAAATAAAAAGTTAATC 2510
||||||||| |||||||
Sbjct 2532 AAAATAAAAGGTTAATC 2548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124564519469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5