BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488928
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20230.1 | Symbols: ATBCB, BCB, SAG14 | blue-copper-binding ... 1378 0.0
> AT5G20230.1 | Symbols: ATBCB, BCB, SAG14 | blue-copper-binding
protein | chr5:6826506-6827629 FORWARD LENGTH=932
Length=932
Score = 1378 bits (746), Expect = 0.0
Identities = 882/945 (93%), Gaps = 19/945 (2%)
Strand=Plus/Plus
Query 1 GAAACCACAACAAACACATAAATCGTAA-GGGTCATTTACTATCTTTTAAGAGACGACAT 59
|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1 GAAACCACAACAAACACAAAAATCAAAAGGGGTCATTTACTATCTTTTAAGAGACGACAT 60
Query 60 ATATAGTTCTCGACCAAGAAAAGAAAAGGGGGTGACCTGAGTGCTTCAACACATAATAAT 119
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 61 ATATAGTTCTCGACCAAGAAAAGAAAAGGGGGTGACCTGAGTTCTTCAACACATAACA-T 119
Query 120 A-TGGCCGGAGTTTTCAAAACGGTTACCTTTATGGTTTTGGTTTTCGCTGCAGCTGTTGT 178
| ||||||||||||||||||||||||| ||| | ||||||||||||||||| | ||||||
Sbjct 120 AATGGCCGGAGTTTTCAAAACGGTTACGTTTCTTGTTTTGGTTTTCGCTGCCGTTGTTGT 179
Query 179 CTTCGCGGAGGACTATGATGTTGGTGATGATACCGAATGGACGAGACCTATGGACCCCGA 238
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 CTTCGCGGAGGACTACGATGTTGGTGATGATACGGAATGGACGAGACCTATGGACCCCGA 239
Query 239 GTTCTATACTACTTGGGCTACCGGTAAAACTTTCCGTGTAGGCGACGAGCTCGAATTTGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTCTATACTACTTGGGCTACCGGTAAAACTTTCCGTGTAGGCGACGAGCTCGAATTTGA 299
Query 299 TTTCGCTGCTGGGAGGCATGATGTGGCAGTTGTAACACAAGATGCATTTGAAAACTGCGA 358
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||
Sbjct 300 TTTCGCTGCTGGGAGGCATGATGTGGCAGTTGTATCAGAAGCTGCATTTGAAAACTGTGA 359
Query 359 GAAAGAGAAACCCATCAGCCATATGACGGTTCCTCCGGTCAAAATTATGCTAAACACCAC 418
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GAAAGAGAAACCCATTAGCCACATGACCGTTCCTCCGGTCAAAATTATGCTAAACACCAC 419
Query 419 TGGACCACAATACTTTATCTGCACCGTCGGTGACCATTGCCGTTTTGGTCAAAAACTCTC 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 420 TGGACCACAATACTTTATCTGCACCGTCGGTGACCATTGTCGTTTTGGTCAAAAACTTTC 479
Query 479 CATCACTGTAGTTGGTGCTGGTGCAAGTGGAGGTGCTACTCCAGGTGCTGGTGGTGGTGC 538
|||||||||||||| ||||||||||| ||||||||||||||| ||||| |||| |
Sbjct 480 CATCACTGTAGTTGCTGCTGGTGCAACTGGAGGTGCTACTCCTGGTGCCGGTG------C 533
Query 539 TACCCCAGCACCTGGGTCAACCCCAAGTGCTGGAGGAACCACTCCCCCCACTGCAGGCGG 598
||||||||||||||| |||||||||||| |||||||||||||||| |||||||| || ||
Sbjct 534 TACCCCAGCACCTGGATCAACCCCAAGTACTGGAGGAACCACTCCTCCCACTGCGGGTGG 593
Query 599 GACCACAACACCTTCAGGCTCTAGCGGAACCACTACTCCAGCTGGAAATGCCGCTTCCTC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GACCACAACACCTTCAGGCTCTAGCGGAACCACTACTCCAGCTGGAAATGCCGCTTCCTC 653
Query 659 ATTAGGTGGTGCTACTTTTCTGGTCGCTTTTGTTTCTGCTGTTGTTGCTCTCTTTTGAGT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATTAGGTGGTGCTACTTTTCTGGTCGCTTTTGTTTCTGCTGTTGTTGCTCTCTTTTGAGT 713
Query 719 CACACTCGAAACTTAGTTAATCAATATGTGTTTGTTTTACCTTACTCTCCTTATTTCTAT 778
|||||||||||| |||||| | ||| | | ||||||||||||||||||||||| ||
Sbjct 714 CACACTCGAAACCTAGTTA-TG--TAT-T-T--GTTTTACCTTACTCTCCTTATTTAAAT 766
Query 779 AGTCATGTATATGACTCTTTGTGAAAATAAGGACTTGTTTTCAAGTCATTATAAACGTCT 838
|||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 767 AGTCATGTATTTGATTATTTGTGAGAATAAGGACTTGTTTTCAAGTCATTATAAACGTCT 826
Query 839 TATACTTGTGATTAGTAT-GAGTTTCGATATATGAGTATTCGGTTGCAAAAGAAATAGTG 897
|||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||| ||||
Sbjct 827 TATACTTGTGATTAGTATTGAGTTTCAATATATGATTATTCGGTTGCAAAATAAAGAGTG 886
Query 898 G-TATTCAACATCATTCAGATTACTACTATATATTACCATATTTC 941
| | ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 887 GGT-TTCAATATCATTGAGATTACTACTATATATTACCATATTTC 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5