BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488929
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20240.1 | Symbols: PI | K-box region and MADS-box transcrip... 1452 0.0
> AT5G20240.1 | Symbols: PI | K-box region and MADS-box transcription
factor family protein | chr5:6829042-6831515 FORWARD
LENGTH=1095
Length=1095
Score = 1452 bits (786), Expect = 0.0
Identities = 949/1024 (93%), Gaps = 25/1024 (2%)
Strand=Plus/Plus
Query 1 TTtctctctctctctcATCAATGTTGCTTTAAAACCAATGCTCCTCTTCATGTTCTTCAT 60
||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 22 TTTCTCTCTCTATCTCATCAATGTTACTTTAAAACCAATGCTCCTCTTCTTGTTCTTCAT 81
Query 61 ATAAACCACATATCCTCTCCTCCACATCTTAACGATTTCATAGCAAACCCTagatttgag 120
|||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||
Sbjct 82 ATAAACCACATATCCTCTCCTCCATATCTTAACAATTTCATAGCAAACCCTAAAATTGAG 141
Query 121 aaagagatagagagagaaagatgggtagagggaagatcgagataaagaggatagagaaCG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 142 AAAGAGATAGAGAGAGAAAGATGGGTAGAGGAAAGATCGAGATAAAGAGGATAGAGAACG 201
Query 181 CAAACAACAGAGTGGTGACGTTCTCGAAA-AGGAGGAATGGGTTGGTGAAGAAGGCTAAA 239
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 202 CAAACAACAGAGTGGTGACGTTCTC-AAAGAGGAGGAATGGATTGGTGAAGAAGGCTAAA 260
Query 240 GAGATCACAGTTCTTTGTGATGCAAAAGTTGCTCTCATAATCTTTGCAAGTAATGGTAAG 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 261 GAGATCACAGTTCTTTGTGATGCAAAAGTTGCCCTCATAATCTTTGCAAGTAATGGTAAG 320
Query 300 ATGGTTGATTATTGTTGTCCTTCCATGGATCTTGGTGCTATGTTGGACCAATACCAGAAG 359
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATGATTGATTACTGTTGTCCTTCCATGGATCTTGGTGCTATGTTGGACCAATACCAGAAG 380
Query 360 TTATCTGGCAAGAAACTATGGGATGCTAAGCATGAGAACCTCAGCAATGAGATTGATAGA 419
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 381 TTATCTGGCAAGAAACTATGGGATGCTAAGCATGAGAACCTTAGCAATGAGATTGATAGG 440
Query 420 ATCAAGAAAGAAAATGATAGCTTACAACTGGAGCTCAGGCACTTGAAGGGGGAAGATATA 479
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 441 ATCAAGAAAGAGAATGATAGCTTACAACTGGAGCTCAGGCATTTGAAGGGAGAAGATATA 500
Query 480 CAGTCTCTCAACTTGAAAAACCTGATGGCTGTCGAGCACGCCATTGAACACGGCCTCGAC 539
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 501 CAGTCTCTCAACTTGAAAAATCTGATGGCTGTCGAGCACGCCATTGAACATGGCCTCGAC 560
Query 540 AAAGTCCGAGACCACCAGATGGAGTTGCTCA-ACTCAAAGAGGAGAAATGTGAAGATGAT 598
|||||||||||||||||||||||| | || | | |||||||||||||||| |||||||||
Sbjct 561 AAAGTCCGAGACCACCAGATGGAGATCCTTATA-TCAAAGAGGAGAAATGAGAAGATGAT 619
Query 599 TATGGAGGAGCATCGGCAACTCACTTTCCAGCTGCAACAACAGGATATGGCTATAGCAAG 658
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 620 GGCGGAGGAGCAACGGCAACTCACTTTCCAGCTGCAACAACAGGAGATGGCTATAGCAAG 679
Query 659 CAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAATTTGGATATAGAGTGCAGCC 718
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 680 CAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAGTTTGGATATAGAGTGCAACC 739
Query 719 GATTCAGCCAAATCTTCAGGAAAAGATCATGTCTTTGGTCATCGATTGATCATGGAGATC 778
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 740 GATTCAGCCAAATCTTCAGGAAAAGATTATGTCTTTGGTCATCGATTGATCATCGAGATT 799
Query 779 T-AGAATCTCATCCT---CAACTCCTATCTATA-T--CGTGGTATTTAGTTTGTCTT-AT 830
| | ||||||||||| ||||||||||||||| | |||||| ||||||||||||| ||
Sbjct 800 TTATAATCTCATCCTGATCAACTCCTATCTATAATATCGTGGTCTTTAGTTTGTCTTTAT 859
Query 831 GAATCTGCATGTCTTAATCTCGAGCTACATGTATACTCTCTATCCGACTTTT-ACTTAAG 889
|||||| |||||||||||||||| |||| ||||||| ||||| ||||||| |||||||
Sbjct 860 CAATCTGTGTGTCTTAATCTCGAGCAACATATATACTCGCTATCAGACTTTTTACTTAAG 919
Query 890 CTATAtgtgtgttgtttgtttgcttctgacct--atgtattggttgtgttgtgtgttTAA 947
|||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||
Sbjct 920 CTATATGTGTGTTGTTTG----CTTATGACCTCTATGTATTGGTTGTGTTGTGTGCTTAA 975
Query 948 ACGTTTGGAACTATTTGCATGTGTGTGAAATGAAACTAATTATTCTGTGTTAAGCTATAT 1007
|||||| |||||| ||| || ||||||||| || ||||||||||| |||||||| |
Sbjct 976 ACGTTTCGAACTAATTG-ATCTGTGTGAAA-----CTTATTATTCTGTGATAAGCTATTT 1029
Query 1008 GTGA 1011
||||
Sbjct 1030 GTGA 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5