BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488950
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20410.1 | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglyce... 2529 0.0
AT2G11810.1 | Symbols: MGDC, MGD3, ATMGD3 | monogalactosyldiacy... 597 1e-169
> AT5G20410.1 | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglycerol
synthase 2 | chr5:6896576-6898783 FORWARD LENGTH=1798
Length=1798
Score = 2529 bits (1369), Expect = 0.0
Identities = 1561/1652 (94%), Gaps = 20/1652 (1%)
Strand=Plus/Plus
Query 1 GTCTTCTCTGTTTGTCTTCCATGTTTCTCTCTTACAACATCAATCATTCACCCAAA-ACA 59
||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 1 GTCTTCTCTGTTTTTCTTCCATGATTCTCTCTTACAACATCAATCGTTCACCCAAACACC 60
Query 60 CTCTC-TT-TCTGTCTCTTTCCTCGGAAGATTT-TCCTTCTCCGGTGTCAAATCGCCG-T 115
|| || || ||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 61 CTTTCTTTCTCTGTCTCTTTCCTCGGAA-ATTTCTCCTTCTCCGGTGTCGAATCGCCGAG 119
Query 116 GGAAGGTGATTTTTCCGGGAAAGTCTCCGTTTTGTTTCTCCTAAACAGATCAACGACTCG 175
|||||||||||||||||||||||||||||||||||||| ||||| || |||| | |
Sbjct 120 GGAAGGTGATTTTTCCGGGAAAGTCTCCGTTTTGTTTCACCTAATCATCTCAA--A---G 174
Query 176 TCTCGTCTCCTTCTTGTTAATGGCGACGACGGTTATGTCCCTAGCAGAGAAAGTGCTCGA 235
|||| ||| | || | ||||||||||||||| ||| |||| ||||||||||| |||||
Sbjct 175 ACTCG--TCC-T-TTATAAATGGCGACGACGGTCATGGCCCTTGCAGAGAAAGTACTCGA 230
Query 236 AAGAGTCTACGGAACTTCCAAATCCGCCGTTTCCGTAGCAGGCGGCGATAGCGAAAAGAC 295
|||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 231 AAGAGTTTACGGAACTTCCAAATCCGCCGTTTCCGTAACAAGCGGCGACGGCGAAAAGAC 290
Query 296 TCACCGTCATACCCATCATCACATTCACCGTAGCAAAAGCTACGACGACAGCGACGAGGA 355
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 291 TCACCGTCATACCCATCATCACATTCACCGTATCAAAAGCTACGACGACATCGACGAGGA 350
Query 356 TGAATCATCAATGGAGCTTGTCCAGATCGGTGCTGAGAGGACAAAGAACGTCTTGATCCT 415
|||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 351 TGAATCATCATTGGAGCTTATCCAGATCGGTGCTGAGAGGACTAAGAACGTCTTGATCCT 410
Query 416 CATGAGCGACACCGGAGGTGGTCACCGTGCTTCGGCTGAAGCCATTCGCGACGCTTTCAA 475
||||||||| || || || |||||||||||||| |||||||||||||| |||||||||||
Sbjct 411 CATGAGCGATACTGGTGGCGGTCACCGTGCTTCCGCTGAAGCCATTCGTGACGCTTTCAA 470
Query 476 GATCGAATTCGGAGACAAATACAGAATAAGTGTGAAGGATGTGTGGAAGGAATACACAGG 535
||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 471 GATCGAATTCGGAGACAAATATAGAGTAATTGTGAAGGATGTGTGGAAGGAATACACAGG 530
Query 536 GTGGCCATTGAATGATATGGAGAGATCATATAAGTTCATGGTGAAGCATGTTCAGCTATG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTGGCCATTGAATGATATGGAGAGATCATATAAGTTCATGGTGAAGCATGTTCAGCTATG 590
Query 596 GAAAGTTGCTTTTCACAGCACATCTCCCAAATGGATCCACTCTTGTTATCTAGCAGCCAT 655
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 591 GAAAGTTGCTTTTCACAGCACATCACCCAAATGGATCCACTCTTGTTATCTAGCAGCCAT 650
Query 656 TGCCGCCTATTACGCTAAGGAAGTAGAGGCGGGTTTGATGGAGTATAAGCCGGAGATAAT 715
||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 651 TGCTGCTTATTACGCTAAGGAAGTAGAGGCTGGTTTAATGGAGTATAAGCCGGAGATAAT 710
Query 716 CATTAGTGTTCATCCTTTGATGCAACATATTCCATTGTGGGTTCTCAAATGGCAAGAGCT 775
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 711 CATTAGTGTTCATCCTTTAATGCAACATATTCCATTGTGGGTTCTTAAATGGCAAGAGCT 770
Query 776 ACAGAAA-AGAGTTCTCTTTGTCACCGTCATTACTGATCTCAACACTTGTCATCCTACTT 834
||| ||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 771 ACA-AAAGAGAGTCCTTTTTGTTACTGTCATTACTGATCTCAACACTTGTCATCCTACTT 829
Query 835 GGTTTCATCCGGGGGTGAATAGGTGCTATTGTCCGTCTCAAGAAGTGGCGAAAAGGGCGT 894
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 830 GGTTTCATCCGGGGGTGAATAGGTGCTATTGCCCGTCTCAAGAAGTGGCGAAAAGGGCGT 889
Query 895 TGTTCGATGGGCTCGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTCAGGCCATCTT 954
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 890 TGTTTGATGGGCTTGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTGAGGCCATCTT 949
Query 955 TTGCACGAGCGGTTTTGGTGAAGGATGATCTAAGAAAGGAGCTTGAGATGGATCAAGATC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTGCACGAGCGGTTTTGGTGAAGGATGATCTAAGAAAGGAGCTTGAGATGGATCAAGATC 1009
Query 1015 TTCGTGCGGTTCTACTGATGGGAGGAGGGGAAGGTATGGGTCCTGTGAAAGAAACAGCCA 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1010 TTCGTGCGGTTCTACTGATGGGAGGAGGGGAAGGTATGGGTCCTGTGAAAGAAACAGCTA 1069
Query 1075 AAGCTCTTGAGGAATTTTTGTATGATAAAGAGAACAGGAAGCCTATTGGGCAAATGGTTG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AAGCTCTTGAGGAATTTTTGTATGATAAAGAGAACAGGAAGCCTATTGGGCAAATGGTTG 1129
Query 1135 TTATCTGTGGACGTAACAAGAAATTGGCATCTGCGTTAGAAGCCATTGAATGGAAGATTC 1194
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1130 TTATCTGTGGACGTAACAAGAAATTGGCATCTGCATTAGAAGCCATTGACTGGAAGATTC 1189
Query 1195 CTGTTAAGGTTCGAGGATTCGAGACTCAGATGGAGAAATGGATGGGAGCTTGTGACTGCA 1254
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1190 CTGTTAAGGTTCGAGGATTTGAGACTCAAATGGAGAAATGGATGGGAGCTTGTGACTGCA 1249
Query 1255 TCATCACAAAAGCTGGACCGGGAACAATCGCTGAATCGTTGAT-CAGATCACTCCCAATC 1313
||||||||||||||||||| |||||||||||||||||| |||| | ||||||| || |||
Sbjct 1250 TCATCACAAAAGCTGGACCAGGAACAATCGCTGAATCGCTGATTC-GATCACTTCCTATC 1308
Query 1314 ATCCTCAACGATTACATTCCCGGACAGGAGAAAGGGAATGTGCCATATGTAGTGGAGAAT 1373
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1309 ATCCTCAACGATTACATTCCTGGACAGGAGAAAGGGAATGTGCCGTATGTAGTGGAGAAT 1368
Query 1374 GGTGCAGGAGTGTTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTCGGGGAATGGTTT 1433
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1369 GGTGCAGGAGTATTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTTGGGGAATGGTTT 1428
Query 1434 AGCACAAAGACAGATGAGCTGGAACAAACTTCAGACAATGCACGTAAACTAGCTCAGCCT 1493
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 AGCACAAAGACAGATGAGTTGGAACAAACTTCAGACAATGCACGTAAACTAGCTCAGCCT 1488
Query 1494 GAGGCAGTCTTCGACATTGTCAAAGACATTGATGAGCTCTCAGAACAACGAGGTCCTCTT 1553
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1489 GAGGCAGTCTTCGACATTGTCAAAGACATTGATGAGCTCTCAGAGCAACGAGGTCCTCTT 1548
Query 1554 GCTAATGTCTCTTACACTCTTACCTCTTCTTTTGCCAGTTTAGTTTGATGTCCGATGTCT 1613
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1549 GCTAGCGTCTCTTACAATCTTACCTCTTCTTTTGCCAGTTTAGTTTGATGTCCCATGT-T 1607
Query 1614 TATATTAACATGTCTCCCTTAGTAGTTCTTTT 1645
||||||||||||||||||||||||||||||||
Sbjct 1608 TATATTAACATGTCTCCCTTAGTAGTTCTTTT 1639
Score = 167 bits (90), Expect = 4e-40
Identities = 117/128 (91%), Gaps = 9/128 (7%)
Strand=Plus/Plus
Query 1645 TAATTTGTTTATTGATTGAAGTTGTATGTATTATTTTCAAGCAAAAGGTTCATGATGTTT 1704
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1671 TAATTTGTTTATTGATTGAAGTTGTATGTATTATTTTTAAGCAAAAGGTTCATGATGTCT 1730
Query 1705 TTGCATTATTGTTAGCCATTGCAACAATTTTAAGATTCAACAAGAGATTCTTGTTCATAT 1764
|||||||||||||||||||| |||||| | | |||||||||||||||||||||||
Sbjct 1731 TTGCATTATTGTTAGCCATT--AACAAT---A---T-CAACAAGAGATTCTTGTTCATAT 1781
Query 1765 AGAATCAC 1772
||||||||
Sbjct 1782 AGAATCAC 1789
> AT2G11810.1 | Symbols: MGDC, MGD3, ATMGD3 | monogalactosyldiacylglycerol
synthase type C | chr2:4743322-4746780 FORWARD LENGTH=1611
Length=1611
Score = 597 bits (323), Expect = 1e-169
Identities = 899/1170 (77%), Gaps = 68/1170 (6%)
Strand=Plus/Plus
Query 378 CAGATCGGTGCTGAGAGGA-CAAAGAAC-G-TCTTGATCCTCATGAGCGACACCGGAGGT 434
||||| || || ||||||| | || ||| | |||| || |||||||| || ||||| |||
Sbjct 262 CAGATGGGAGCAGAGAGGATC-AA-AACTGTTCTT-ATTCTCATGAGTGATACCGGCGGT 318
Query 435 GGTCACCGTGCTTCGGCTGAAGCCATTCGCGACGCTTTCAAGATCGAATTCGGAGACAAA 494
|| ||||||||||| || || ||||| ||||||||||||||||||||||||||||| |
Sbjct 319 GGCCACCGTGCTTCAGCCGAGGCCATCCGCGACGCTTTCAAGATCGAATTCGGAGATGAC 378
Query 495 TA-CAGAATAAGTG-TGAAGGATGTGTGGAAGGAATACACAGGGTGGCCATTGAATGATA 552
|| | || ||| | | || ||||| ||||| |||||||| || ||||||||||| || |
Sbjct 379 TATCGGA-TAA-TCATAAAAGATGTTTGGAAAGAATACACTGGATGGCCATTGAACGACA 436
Query 553 TGGAGAGATCA-TATAAGTTCATGGTGAAGCATGTTCAG-CTATGGAAAGTTGCTTTTCA 610
|||||||| || || |||||||||||||| |||||| | || ||| ||||| |||||
Sbjct 437 TGGAGAGA-CAGTACAAGTTCATGGTGAAACATGTTG-GTCTTTGGTCTGTTGCGTTTCA 494
Query 611 CAGCACATCTCCCAAATGGATCCACTCTTGTTATCTA-GCAGC-CATTGCCGCCTATTAC 668
| || |||||||||||||||||| | |||||| | || | ||||||| |||||
Sbjct 495 TGGTACTTCTCCCAAATGGATCCACAAAAGCTATCTAAGT-GCTC-TTGCCGCTTATTAT 552
Query 669 GCTAAGGAAGTAGAGGCGGGTTTGATGGAGTATAAGCCGGAGATAATCATTAGTGTTCAT 728
|| || ||| ||||||| ||||| |||||||| || ||||| || || ||||| || |||
Sbjct 553 GCCAAAGAAATAGAGGCCGGTTTAATGGAGTACAAACCGGACATTATTATTAGCGTGCAT 612
Query 729 CCTTTGATGCAACATATTCCATTGTGGGTTCTCAAATGGCAAG-AGCTACAGAA-AAGAG 786
||| |||||||||| || ||||||||||| | |||||||||| | || || || || ||
Sbjct 613 CCTCTGATGCAACACATACCATTGTGGGTAATGAAATGGCAAGGA-CTTCACAAGAA-AG 670
Query 787 TTCTCTTT-GTCACCGTCATTACTGATCTCAACACTTGTCATCC-TACTTGGTTTCATCC 844
|| | ||| || || ||||| |||||||| |||||||| || || ||| ||||| ||||
Sbjct 671 TTAT-TTTCGTTACGGTCATCACTGATCTAAACACTTGCCA-CCGTACATGGTTCCATCA 728
Query 845 GGGGGTGAATAGGTGCTATTGTCCGTCTCAA-GAAGTGGCGAAA-AGGGCGTT-GTTCGA 901
|| || | || || ||||||||||| ||| || || || ||| || || || || ||
Sbjct 729 TGGAGTCAGCAGATGTTATTGTCCGTC-CAAAGAGGTTGC-AAAGAGAGCATTAGTA-GA 785
Query 902 TGGGCTCGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTCAGGCCATCTTTTGCACG 961
|| || ||||| |||||| ||||||||||||| ||||||||| | |||||||| | ||
Sbjct 786 CGGCCTTGATGACTCTCAAATCCGTGTCTTTGGCTTACCTGTCCGCCCATCTTTCCCTCG 845
Query 962 -AGCGGTTTTGGTGAAGGATGATCTAAGAAAGGAGCTTGAGATGGA-TCAAGATCTT-CG 1018
| | || | ||| |||| ||||| ||||| ||||| || || | || || || |
Sbjct 846 CA-CTATTCTCAACAAGAATGAACTAAGGAAGGAACTTGAAATAGACTTAA-AT-TTACC 902
Query 1019 TGCGGTTCTACTGATGGGAGGAGGG-GAAGGTATGGGTCCTGTG-AAAGAAACAGC-CAA 1075
|||||||||| | |||||||| ||| ||||| |||||||| || ||| ||||||| | |
Sbjct 903 TGCGGTTCTATTAATGGGAGG-GGGTGAAGGAATGGGTCCGGTTCAAA-AAACAGCTCTA 960
Query 1076 AGCTCTTG-AGGAATT-TTTGTATGA-TA-AAGAGAACAGGAAGCCTATTGGGCAAATGG 1131
|| |||| || | || ||| || | | || |||| || || || || || ||| ||
Sbjct 961 -GCCCTTGGAG-A-TTCTTTATACAACTCTAA-AGAA-AGTAATCCAATAGGACAATTGA 1015
Query 1132 TTGTTATCTGTGGACGTAACAA-GAAATTGGCATCTGCGTTAGAAGC-CATTGAATGGAA 1189
|||| || || || || ||||| | ||| | ||| | |||| | | ||| ||||||||
Sbjct 1016 TTGTCATATGCGGCCGGAACAAAGTCCTTG-CTTCTACATTAGCATCTCAT-GAATGGAA 1073
Query 1190 GATTCCTGTTAAGGTTCGAGGATTCGAGACTCAGATGGAGAAATGGATGGGAGCTTGTGA 1249
|||||| || ||||||||||| || || || || ||||| ||||||||||||||||||||
Sbjct 1074 GATTCCGGTCAAGGTTCGAGGGTTTGAAACACAAATGGAAAAATGGATGGGAGCTTGTGA 1133
Query 1250 CTGCATCATCACAAAAGCTGGACCGGGAACAATCGCTGAATCGTTGATCAGAT-CACTCC 1308
|| |||||||| || ||||| ||||| || || || ||| | |||| | | ||||
Sbjct 1134 TTGTATCATCACTAAGGCTGGTCCGGGTACGATTGCGGAAGCACTGATTTGCGGC-CTCC 1192
Query 1309 CAATCATCCTCAACGATTACATTCCCGGACAGGAGAAAGGGAATGTGCCATATGTAGTGG 1368
|||| |||||||| || || ||||| |||||||| ||||| || ||||| ||||| ||||
Sbjct 1193 CAATTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAACGTGCCGTATGTTGTGG 1252
Query 1369 AGAATGGTGCAGGAGTGTTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTCGG-GGAA 1427
| ||||| || ||||| ||||| ||||||||||||| || || | |||||| || |||
Sbjct 1253 ACAATGGGGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATCGT-GGCGGAT 1311
Query 1428 TGGTTTAGCA-CAA-AGACAGATGAGCTGGAACAAACT-TCAGACAATGCACGTAAACTA 1484
|||||||||| ||| | | ||| || | || ||| | ||||| ||||| | |||| |
Sbjct 1312 TGGTTTAGCAACAATA-A-AGAGGAATTA-AAGAAAATGTCAGAGAATGCTC-TAAAGTT 1367
Query 1485 G-CTCAGCCTGAGGCAGTCTTCGACATTGT 1513
| | || ||||| || || |||||||||||
Sbjct 1368 GTCGCAACCTGAAGCCGTGTTCGACATTGT 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87650151570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5