BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488953
Length=3299
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20480.1 | Symbols: EFR | EF-TU receptor | chr5:6922480-6925... 4940 0.0
AT5G39390.1 | Symbols: | Leucine-rich repeat protein kinase fa... 1057 0.0
AT3G47110.1 | Symbols: | Leucine-rich repeat protein kinase fa... 399 6e-110
AT1G09995.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D su... 135 2e-30
> AT5G20480.1 | Symbols: EFR | EF-TU receptor | chr5:6922480-6925887
FORWARD LENGTH=3321
Length=3321
Score = 4940 bits (2675), Expect = 0.0
Identities = 3119/3330 (94%), Gaps = 44/3330 (1%)
Strand=Plus/Plus
Query 1 ATCTTTTTATAAGCGACATGAAGCTGT-CTTTTCCACTTGCTTTCAATGCTCTCATGTTG 59
|||||||||||| |||||||||||||| ||||| |||||| |||||||||||||| ||||
Sbjct 1 ATCTTTTTATAATCGACATGAAGCTGTCCTTTT-CACTTGTTTTCAATGCTCTCACGTTG 59
Query 60 CTTCTTCAAGTTTGCTGCGTGGTCTTTGCTCAAGCCAGGTTTTCTAATGAGACTGACATG 119
|||||||||| || ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 60 CTTCTTCAAG-TT--TGC---ATCTTTGCTCAAGCCAGGTTTTCTAATGAGACTGATATG 113
Query 120 AAAGTTTTGCTTGAGTTCAAGTCTCAAGTTTCTG--AA-AACAAGAGAGAGGTCTTGGCC 176
||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 114 CAAGCTTTGCTTGAGTTCAAGTCTCAAGTTTCTGAAAACAACAAGAGAGAGGTCTTGGCT 173
Query 177 TCATGGAATCACTCCTCCCCATTATGCAATTGGATTGGAGTCATATGTGGCCGCAGGCA- 235
||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |
Sbjct 174 TCATGGAATCACTCCTCCCCATTTTGTAATTGGATTGGAGTCACATGTGGCCGCAGG-AG 232
Query 236 AGAAAGAGTTATAAGTCTGAACCTCGGAGGATTCAAGTTAACCGGTGTGATCTCACCCTC 295
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 233 AGAAAGAGTTATAAGTTTGAACCTTGGAGGATTCAAGTTAACCGGTGTGATCTCACCCTC 292
Query 296 CATTGGTAATCTCTCCTTTCTCAGGTTTCTTAATCTTGGAGACAACTCTTTTGGAAGTAC 355
||||||||||||||||||||| || || |||||||||| |||||||||||||||||||||
Sbjct 293 CATTGGTAATCTCTCCTTTCTTAGATTACTTAATCTTGCAGACAACTCTTTTGGAAGTAC 352
Query 356 CATCCCTCAAGAGGTGGGAATGCTATTTAGGCTTCAGTACTTGAACATGAGCTATAATCT 415
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 353 CATCCCTCAAAAGGTGGGAAGGCTATTTAGGCTTCAGTACTTGAACATGAGCTATAATCT 412
Query 416 TCTCCAAGGAAGGATTCCGCCTAGTCTTTCTAATTGCTCTAGACTGTCGACTGTTGATTT 475
|||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 413 TCTCGAAGGAAGGATTCCGTCTAGTCTTTCTAACTGCTCTAGACTGTCGACCGTTGATTT 472
Query 476 ATCGTCAAACCAGCTTGGACATGGCGTTCCTTCAGAACTAGGTTCACTTTCTAAGCTGGC 535
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 473 ATCGTCAAACCATCTTGGACATGGTGTTCCTTCAGAACTAGGTTCACTTTCTAAGCTTGC 532
Query 536 CATTCTGGATCTTAGTAAAAACAACCTTACAGGAAATTTTCCTGCATCTTTTGGAAACTT 595
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 533 CATTCTGGATCTTAGCAAAAACAACCTTACTGGAAATTTTCCTGCATCTTTAGGAAACTT 592
Query 596 GACGTCACTCCAGAAGCTTGACTTTGCATATAACCAGATGGGAGGTGAGATTCCAGACGA 655
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 GACGTCACTTCAGAAGCTTGACTTTGCATATAACCAGATGAGAGGTGAGATTCCAGACGA 652
Query 656 AGTAGCTAGATTGACTCATATGGTGTTTTTTCAAATAGCACTGAATAGTTTTTCAGGTGG 715
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 653 AGTAGCTAGATTGACTCAAATGGTGTTTTTCCAAATAGCACTGAATAGTTTTTCAGGTGG 712
Query 716 TTTTCCTCCTGCATTGTACAACATCTCCTCTCTTGAGTTTCTATCTCTAGCTGACAATAG 775
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 713 TTTTCCTCCTGCATTGTACAACATCTCCTCTCTTGAGTCTCTATCTCTAGCTGACAATAG 772
Query 776 CTTTTCGGGTAACCTTAGGGCTGATTTTGGTGATCTTCTACCAAGTCTAAGATGGCTTCT 835
|||||||||||| |||||||||||||||||| |||||||||||| ||||||| | |||||
Sbjct 773 CTTTTCGGGTAATCTTAGGGCTGATTTTGGTTATCTTCTACCAAATCTAAGAAGACTTCT 832
Query 836 TTTGGGATCAAATCAGTTCACTGGAGCTATTCCCATAACACTTGCCAATATCTCAAGCCT 895
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 TTTGGGAACAAATCAGTTCACTGGAGCTATTCCCAAAACACTTGCCAATATCTCAAGCCT 892
Query 896 TGAATGGTTTGATATCTCATCTAATTACCTGACTGGAAGTATCCCTTTGAGCTTTGGAAA 955
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 893 TGAAAGGTTTGATATCTCATCTAATTACCTGTCTGGTAGTATCCCTTTGAGCTTTGGAAA 952
Query 956 GTTACGTAATCTGTGGTGGTTAGGAATTCGTAATAACTCTCTTGGATATAACTCGTCCAG 1015
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 953 GTTACGTAATCTGTGGTGGTTAGGGATTCGTAATAACTCTCTTGGAAATAACTCGTCCAG 1012
Query 1016 TGGTCTTGAATTTATTGGTGCTTTGGCGAACTGCACTCAATTAGAGTACTTAGATGTTGG 1075
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGTCTTGAATTTATTGGGGCTGTGGCGAACTGCACTCAATTAGAGTACTTAGATGTTGG 1072
Query 1076 TTACAATAGACTTGGAGGTGAGCTGCCTGCCTCCATGGCCAATCTGTCCACTAAATTGAC 1135
|||||||||||||||||||||||| ||||| || || |||||||||||||||| ||||||
Sbjct 1073 TTACAATAGACTTGGAGGTGAGCTTCCTGCTTCTATAGCCAATCTGTCCACTACATTGAC 1132
Query 1136 TAGTCTGTTCCTTGGACAAAATCTTATCTCTGGAACCATTCCTTACGACATCGGGAATCT 1195
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1133 TAGTCTGTTCCTTGGACAAAATCTTATCTCTGGAACCATTCCTCATGACATCGGGAATCT 1192
Query 1196 TATAAGCCTGCAAGAACTCAGTTTGGAAACAAATAAGTTGTCTGGAGAACTTCCAGTCTC 1255
| ||||||||||||||||||| || |||||||||| |||| |||||||||||| |||||
Sbjct 1193 TGTAAGCCTGCAAGAACTCAGCTTAGAAACAAATATGTTGAGTGGAGAACTTCCCGTCTC 1252
Query 1256 TTTCGGGAAGCTTTTGAATTTGCAGGTGGTGGATCTCTATTCAAATGCAATATCGGGGGA 1315
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 1253 TTTCGGGAAGCTTTTGAACTTGCAGGTTGTGGATCTGTATTCAAATGCAATATCGGGGGA 1312
Query 1316 AATACCATCTTATTTTGGCAACATGACTCGGTTGCAGAAGCTCCATTTGAATAGCAATAG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AATACCATCTTATTTTGGCAACATGACTCGGTTGCAGAAGCTCCATTTGAATAGCAATAG 1372
Query 1376 TTTCCACGGAAGAATCCCTCAGAGTCTTGGACGTTGTCAATACTTGCTAGACCTGTGGAT 1435
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1373 TTTCCACGGAAGAATCCCTCAGAGTCTTGGACGTTGTCGATACTTGCTAGACCTGTGGAT 1432
Query 1436 TGATACAAATAGGTTGAATGGGACTATACCTCGGGAAATACTGCAAATTCCGTCCCTCGC 1495
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1433 GGATACAAATAGGTTGAATGGGACTATACCTCAGGAAATACTGCAAATTCCATCCCTCGC 1492
Query 1496 TTACATAGATTTGTCAAACAATTTCTTGACCGGCCATTTTCCAGAAGAAGTTGGAAAGTT 1555
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1493 TTACATAGATTTGTCAAACAATTTCTTGACAGGCCATTTTCCAGAAGAAGTTGGAAAGTT 1552
Query 1556 GGAACTTCTTGTTGGACTAGGTGCTTCGTACAACAAATTATCAGGACAGATCCCACAAGC 1615
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1553 AGAACTTCTTGTTGGACTAGGTGCTTCGTACAACAAATTATCAGGAAAGATGCCACAAGC 1612
Query 1616 TATAGGGGGTTGTCTCTCGATGGAATTTCT-TTATATGCAAGGAAATTCGTTTGACGGAG 1674
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1613 TATAGGGGGTTGTCTTTCGATGGAATTTCTCTT-TATGCAAGGAAATTCGTTTGACGGAG 1671
Query 1675 CCATTCCAGATATAAGTCGGTTGGTAAGCCTAACGAATGTTGACTTCTCCAACAACAATC 1734
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1672 CCATTCCAGATATAAGCCGGTTGGTAAGCCTAAAGAATGTTGACTTCTCCAACAACAATC 1731
Query 1735 TCTCTGGCCGGATACCTCGATATCTGGCCAATCTACCTTTGTTGCGAAATCTGAATCTTT 1794
|||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||
Sbjct 1732 TCTCTGGCCGGATACCTCGATATCTGGCCAGTCTTCCTTCGCTGCGAAATCTGAATCTTT 1791
Query 1795 CTATGAACAATTTTGAGGGAAGCGTGCCAACAACAGGAGTGTTCCGAAATGCTACAGCAG 1854
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1792 CTATGAACAAGTTTGAGGGAAGGGTGCCAACAACAGGAGTGTTTCGAAATGCTACAGCAG 1851
Query 1855 TTTCTGTTTTTGGTAACAAAAATATATGCGGAGGCATCAGAGAAATGCAACTAAAGCCAT 1914
|||||||||||||||||| |||||| ||||||||| || |||||||||||||||||||||
Sbjct 1852 TTTCTGTTTTTGGTAACACAAATATTTGCGGAGGCGTCCGAGAAATGCAACTAAAGCCAT 1911
Query 1915 GCATTGTAGAAGCATCTCCAAGGAAGAGAAAGCCTTTCTCACTTAGAAAGAAAGTTTTCA 1974
|||||||| | |||||||||||||||||||||||| | ||| |||||||||||||| |||
Sbjct 1912 GCATTGTACAGGCATCTCCAAGGAAGAGAAAGCCTCTGTCAGTTAGAAAGAAAGTTGTCA 1971
Query 1975 GTGGTATTGGTATAGGTATAGCTTCGCTTTTGTTAATCATAATTGTGGCTTCTCTGTGTT 2034
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GTGGTATTTGTATAGGTATAGCTTCGCTTTTGTTAATCATAATTGTGGCTTCTCTGTGTT 2031
Query 2035 GGTTCATGAAGAGGAGAAAGAAGAACAATGCCAGTGATGGTAACCCATCTGATTCTACTA 2094
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2032 GGTTCATGAAGAGGAAAAAGAAAAACAATGCCAGTGATGGTAACCCATCTGATTCTACTA 2091
Query 2095 CTTTGGGGATGTTCCATGAGAAGGTAAGTTATGATGAGCTTCATAGTGCAACAAGTGGCT 2154
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 2092 CTTTGGGGATGTTCCATGAGAAGGTAAGTTATGAAGAGCTTCATAGTGCAACAAGTCGCT 2151
Query 2155 TCTCTTCAACCAATCTGATTGGGTCAGGCAATTTCGGTAATGTGTTTAAAGGATTGCTTG 2214
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2152 TCTCTTCAACCAATTTGATTGGTTCAGGCAATTTCGGTAATGTGTTTAAAGGATTGCTTG 2211
Query 2215 GCCATGAGAATAGACTCGTTGCGGTTAAAGTTCTGAACCTCCTAAAGCATGGAGCAACTA 2274
||| |||||||| |||||| |||||||||||| |||||||||||||||||||||| || |
Sbjct 2212 GCCCTGAGAATAAACTCGTCGCGGTTAAAGTTTTGAACCTCCTAAAGCATGGAGCGACGA 2271
Query 2275 AAAGCTTTATGTCGGAATGTGAAACCTTCAAGGGTATACGACATCGTAACCTTGTAAAAC 2334
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 AAAGCTTTATGGCGGAATGTGAAACCTTCAAGGGTATACGACATCGTAACCTTGTAAAAC 2331
Query 2335 TGATAACGGTCTGTTCAAGTCTCGATTCCGAGGGAAATGAGTTCAGAGCTCTGGTCTATG 2394
|||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 2332 TGATAACGGTTTGTTCAAGCCTTGATTCCGAGGGAAATGATTTCAGAGCTCTGGTCTATG 2391
Query 2395 AGTTCATGCCAAAAGGAAGTCTGGATATGTGGCTGCAGCCAGAAGATCAGGAAAGGGCAA 2454
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 2392 AGTTCATGCCAAAAGGAAGTCTGGATATGTGGCTGCAGCTAGAAGATCTGGAAAGGGTAA 2451
Query 2455 ACGAGCACTCGAGATCCTTAACACTTGCAGAGAAACTCAACATAGCAATAGATGTGGCTT 2514
|||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2452 ACGATCACTCGAGATCTTTAACACCCGCAGAGAAACTCAACATAGCAATAGATGTGGCTT 2511
Query 2515 CAGCTTTGGAGTATCTGCACGTTCATTGTCATGACCCTGTAGCTCACTGTGATATTAAGC 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2512 CAGCTTTGGAGTATCTGCACGTTCATTGTCATGACCCTGTAGCTCACTGTGATATTAAGC 2571
Query 2575 CAAGCAACGTTCTTCTAGACGATGATCTGACTGCTCATGTTAGTGACTTTGGTTTGGCTC 2634
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2572 CAAGCAACATTCTTCTAGACGATGATCTGACTGCTCATGTTAGTGACTTTGGTTTGGCTC 2631
Query 2635 GGCTCCTCTATAAATACGATCGAGAATCCTTTCTAAACCAGTTTAGTTCTGCCGGTGTCA 2694
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2632 AGCTCCTCTATAAATACGATCGAGAATCCTTTCTAAACCAGTTTAGTTCTGCTGGTGTCA 2691
Query 2695 GAGGCACCATTGGCTATACCGCACCAGAATATGGAATGGGAGGCCAACCATCAATACAAG 2754
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2692 GAGGCACCATTGGCTATGCCGCGCCAGAGTATGGAATGGGAGGCCAACCATCAATACAAG 2751
Query 2755 GAGATGTGTACAGCTTTGGAATTCTACTTTTGGAGATGTTCACAGGAAAGAAACCGACAG 2814
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 2752 GAGATGTGTACAGCTTCGGAATTCTACTTTTGGAGATGTTTAGTGGAAAGAAACCAACAG 2811
Query 2815 GCGAACCATTTGCAGGCGATTACAACCTCCACTGCTACACACAGTCGGTATTGTCTGGTT 2874
||| |||||||||||||||| ||||||||| |||||||| |||| |||| || ||||
Sbjct 2812 ATGAATCATTTGCAGGCGATTATAACCTCCACAGCTACACAAAGTCTATATTATCGGGTT 2871
Query 2875 GCACGAGTAGTGGAGGCAGCAACGCCATTGATGAATGGTTGAGACTGGTTTTGCAGGTGG 2934
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2872 GCACGAGCAGTGGAGGCAGCAACGCCATTGATGAGGGGTTGAGACTGGTTTTGCAGGTGG 2931
Query 2935 GGATAAAGTGTTCTGAAGAATATCCAAGGGATAGGATGAGAATTGCTGAAGTGGTACGAG 2994
||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||
Sbjct 2932 GGATAAAGTGTTCTGAAGAATATCCGAGGGATAGGATGAGAACGGATGAAGCAGTACGAG 2991
Query 2995 AATTAATCTCAATCAGAACTAAATTCTTCAGTGCCAAGACGACTATTACAGAGAGTCCTC 3054
||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2992 AATTAATCTCAATAAGATCTAAGTTCTTCAGTTCCAAGACGACTATTACAGAGAGTCCTC 3051
Query 3055 GAGATGCTCCGCAAAGTTCTCCTCAGGAATGGATGTTAGATGCGGACTTGCATACTGTGT 3114
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 3052 GAGATGCTCCGCAAAGTTCTCCTCAGGAATGGATGTTAAATACGGACATGCATACTATGT 3111
Query 3115 AGACCCTTCTCAACTACTTAGGATGGGCACACAGTAAAAG---AT---CG-----A--A- 3160
|||||||||||||||||||| | ||| |||||||||||| || || | |
Sbjct 3112 AGACCCTTCTCAACTACTTATG--GGG-ACACAGTAAAAGTGTATTTGCGTGTGCATCAT 3168
Query 3161 --A--CAGAACAT-TGTTGGG-G-AG-AGA--CTACTAATTATATATAA-AGAACATTTT 3209
| ||||||| ||||||| | || ||| |||||| ||||| |||| |||| | ||
Sbjct 3169 CGAAACAGAACAAATGTTGGGAGGAGGAGAGACTACTAGTTATA-ATAAGAGAATAAATT 3227
Query 3210 AAAATCTATCTCTGCTGTAGCCTTTCTTTTGTTGTTGTGGGTGATAATGATTATGACCAC 3269
||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||
Sbjct 3228 AAAATCTATCTCTGCTGTAGCCTTTTTTTTTTTGTTGTGGGTGAAAATGATTATGATCAC 3287
Query 3270 ATAGATATGGTCGTTGAATATCCTTTTTCA 3299
||| ||||||||||||||||||||||||||
Sbjct 3288 ATATATATGGTCGTTGAATATCCTTTTTCA 3317
> AT5G39390.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:15763715-15765469 REVERSE LENGTH=1509
Length=1509
Score = 1057 bits (572), Expect = 0.0
Identities = 809/921 (88%), Gaps = 26/921 (3%)
Strand=Plus/Plus
Query 2115 AAGGTAAGTTATGATGAGCTTCATAGTGCAACAAGTGGCTTCTCTTCAACCAATCTGATT 2174
||| |||||||||| |||||| ||| ||||||||||||||||||||||| |||||| |||
Sbjct 586 AAGATAAGTTATGAAGAGCTTTATAATGCAACAAGTGGCTTCTCTTCAAGCAATCTAATT 645
Query 2175 GGGTCAGGCAATTTCGGTAATGTGTTTAAAGGATTGCTTGGCCAT-GA-GAATAGACTCG 2232
|| |||||||| ||| || |||||||||||||||||||||||| | || ||| | |||||
Sbjct 646 GGTTCAGGCAACTTCAGTGATGTGTTTAAAGGATTGCTTGGCC-TCGAGGAA-AAACTCG 703
Query 2233 TTGCGGTTAAAGTTCTGAACCTCCT-AAAGCATGGAGCAACTAAAAGCTTTAT-GTCGGA 2290
| |||||||||||| |||||||||| ||| ||||||||||| ||||||||||| | ||||
Sbjct 704 TCGCGGTTAAAGTTTTGAACCTCCTGAAA-CATGGAGCAACAAAAAGCTTTATAG-CGGA 761
Query 2291 ATGTGAAACCTTCAAGGGTA-TACGACATCGTAACCTTGTAAAACTGATAACGGTCTGTT 2349
||||||| | ||||| |||| || | || |||||||||| ||||||||||| || || |
Sbjct 762 ATGTGAATCTTTCAAAGGTATTA-GGCACCGTAACCTTGCGAAACTGATAACAGTTTGCT 820
Query 2350 CAAGTCTCGATTCCGAGGGAAATGAGTTCAGAGCTCTGGTCTATGAGTTCATGCCAAAAG 2409
|||| || |||||| | |||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 821 CAAGCCTTGATTCCCAAGGAAATGATTTCAGAGCTTTAGTCTATGAGTTCATGCCAAAAG 880
Query 2410 GAAGTCTGGATATGTGGCTGCAGCCAGAAGATCAGGAAAGGGCAAACGAGCACTCGAGAT 2469
||||||| ||||||||||| |||||||||||| |||||| |||||| | ||||| || |
Sbjct 881 GAAGTCTAGATATGTGGCTACAGCCAGAAGATTTGGAAAGTGCAAACAATCACTCAAGGT 940
Query 2470 CCTTAACACTTGCAGAGAAACTCAACATAGCAATAGATGTGGCTTCAGCTTTGGAGTATC 2529
| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 941 CTTTAACATTTGCAGAGAAAGTCAACATAGCAATAGATGTGGCTTCTGCTTTGGAGTATC 1000
Query 2530 TGCACGTTCATTGTCATGACCCTGTAGCTCACTGTGATATTAAGCCAAGCAACGTTCTTC 2589
|||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1001 TGCATGTTTATTGTCATGACCCTGTCGCTCATTGTGATATTAAGCCAAGCAACGTTCTTC 1060
Query 2590 TAGACGATGATCTGACTGCTCATGTTAGTGACTTTGGTTTGGCTCGGCTCCTCTATAAAT 2649
||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1061 TAGACGATGATTTGACGGCTCATGTTAGTGACTTTGGTTTGGCTCGGCTCCTTTATAATT 1120
Query 2650 ACGATCGAGAAT-CCTTTCTAAACCAGTTTAGTTCTGCCGGTGTCAGAGGCACCATTGGC 2708
|||| ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1121 TCGAT-GAGAAAACCTTTCTAAACCAGTTCAGTTCTGCCGGTGTGAGAGGTACCATTGGC 1179
Query 2709 TATACCGCACCAGAATATGGAATGGGAGGCCAACCATCAATACAAGGAGATGTGTACAGC 2768
||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 1180 TATGCCGCACCAGAATATGGAATGGGAAGCAAACCATCAATACAAGGAGATGTTTACAGC 1239
Query 2769 TTTGGAATTCTACTTTTGGAGATGTTCACAGG-AAAGAAACCGACAGGCGAAC-CATTTG 2826
|||||| || ||||||||||||||||||| || ||| |||||||||| | || ||||||
Sbjct 1240 TTTGGAGTTTTACTTTTGGAGATGTTCACTGGGAAA-AAACCGACAGAC-AATTCATTTG 1297
Query 2827 CAGGCGATTACAACCTCCACTGCTACACACAGTCGGTATTGTC-TGGTTGCACGAGTAGT 2885
|||| ||| ||||||||| |||||||| ||||||||||||| || || |||||| ||
Sbjct 1298 GTGGCGGTTATAACCTCCACGGCTACACAAAGTCGGTATTGTCGTG-TTCCACGAGCAGA 1356
Query 2886 GGAGGCAGCAACGCCAT--T-GATGAATGGTTGAGACTGGTTTTGCAGGTGGGGATAAAG 2942
|||||||| ||| | || | ||||| ||||||||||| |||||| | ||||| ||||||
Sbjct 1357 GGAGGCAG-AAC-C-ATGGTTGATGAGTGGTTGAGACTAGTTTTGGAAGTGGGAATAAAG 1413
Query 2943 TGTTCTGAAGAATATCCAAGGGATAGGATGAGAATTGCTGAAGTGGTACGAGAATTAATC 3002
|||||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||| ||
Sbjct 1414 TGTTCTGAAGAATATCCACGGGATAGGATGGGAATGGCTGAAGCGGTACGAGAATTAGTC 1473
Query 3003 TCAATCAGAA-CTAAATTCTT 3022
||||||| || |||| |||||
Sbjct 1474 TCAATCA-AATCTAAGTTCTT 1493
> AT3G47110.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:17347103-17350296 REVERSE LENGTH=3078
Length=3078
Score = 399 bits (216), Expect = 6e-110
Identities = 1331/1848 (72%), Gaps = 162/1848 (9%)
Strand=Plus/Plus
Query 126 TTGCTTGAGTTCAAGTCTCAAGTTTCTGAAAACAAG-AGAGAGGTCTTGGCCTCATGGAA 184
||||||||||||||||||||||||||||||| |||| |||| || |||| ||| |||||
Sbjct 130 TTGCTTGAGTTCAAGTCTCAAGTTTCTGAAA-CAAGTAGAGTTGTGTTGGGCTCGTGGAA 188
Query 185 TCACTCC-TCCC-CATTATGCAATTGGATTGGAGTCATA-TGTGGCCGCAGGCA-AGAAA 240
| ||||| | || | | || | |||| || || | | ||||||| || || || |
Sbjct 189 TGACTCCCTGCCTC-TC-TGTAGCTGGACCGGTGTTA-AGTGTGGCCTCAAACACAGGA- 244
Query 241 GAGTTA-TAAGTCTGAACCTCGGAGGATTCAAGTTAACCGGTGT-GATCTCACCCTCCAT 298
|||| | | || || | || |||||| | || |||||||||| | |||| |||| |
Sbjct 245 GAGTAACTG-GTGTGGATCTTGGAGGACTAAAACTAACCGGTGTAG-TCTCTCCCTTTGT 302
Query 299 TGGTAATCTCTCCTTTCTCAGGTTTCTT-AATCTTGGAGACAACTCTTTTGGAAG-TACC 356
|||||| ||||| ||||| || | | || ||||||| |||||||| |||| | | | ||
Sbjct 303 TGGTAACCTCTCATTTCTTAGATCT-TTGAATCTTGCAGACAACT-TTTTCCATGGTGCC 360
Query 357 ATCCCT-CAAGAGGTGGGAATGCTAT-TT-AGGCTTCAGTACTTGAACATGAGCTATAAT 413
|||||| || ||||| |||| || | || |||||||| || |||||||||||| |||||
Sbjct 361 ATCCCTTCA-GAGGTTGGAAA-CT-TGTTCAGGCTTCAATATTTGAACATGAGCAATAAT 417
Query 414 CT-TCTCCAAGGAAGGATTCCGCCTAGT-CTTTCTAATTGCTCTAGACTGTCGACTGTTG 471
| | | | || | |||||| | || || || || |||||||| ||||| || |||
Sbjct 418 TTATTTGGAGGGGTG-ATTCCGGTT-GTTCTGTCGAACTGCTCTAGCCTGTCAACACTTG 475
Query 472 ATTTATCGTCAAACCAGCTTGGACATGGCGTTCCTTCAGAACTAGGTTCACTTTCTAAGC 531
||||||| ||||| || |||| ||| ||||| |||| || | ||||| || |||||||
Sbjct 476 ATTTATCATCAAATCATCTTGAACAAGGCGTGCCTTTGGAGTTTGGTTCGCTGTCTAAGC 535
Query 532 TGG-CCATTCTGGATCTTAGTAAAAACAACCTTACAGGAAATTTTCCTGCATCTTTTGGA 590
| | || |||| |||| ||| |||||| || ||||| || |||||||| || || |||
Sbjct 536 TTGTCC-TTCTCTCTCTTGGTAGAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGA 594
Query 591 AACTTGACGTCACTCCAGAAGCTTGACTTTGCATATAACCAGATGGGAGGTGAGATTCCA 650
||| |||| |||||||||| ||| || ||| ||||||||| || | ||| ||||| ||
Sbjct 595 AACCTGACATCACTCCAGATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCT 654
Query 651 GACGA-AGTAGCTAGATTGACTCATATGGTGTTTTTTCAAATAGCACTGAATA-GTTTT- 707
| || | |||| ||| ||| || ||| | ||||| | ||||||| | || | ||||
Sbjct 655 GGGGATA-TAGCCAGACTGAAACAGATGATCTTTTTCCGAATAGCATTAAACAAGTTTAA 713
Query 708 TCAGGTGGTTTTCC-TCCTGCA-TTGTACAACATCTCCTCTCTTGAGT-TTC-TATCTC- 762
| || |||||||| |||| || || |||||| | || || || | | ||| | || |
Sbjct 714 T--GG-GGTTTTCCCTCCTCCAATT-TACAACCTGTCTTCACTA-A-TATTCCTGTC-CA 766
Query 763 T-AGCTGACAATAGCTTT-TCGGGTAACCTTAGGGCTGATTTTGGTGATCTTCTACC-AA 819
| | | | ||| || ||| || || | |||||| |||| |||||| |||||| || ||
Sbjct 767 TTACCGG-CAACAG-TTTCTCTGGCACCCTTAGACCTGACTTTGGTTCTCTTCTCCCTAA 824
Query 820 G-T-CTAAGATGGCT-TCTTTTGGGATCAAATCAGTT-CACTGG-AGCTATTCCCATA-A 873
| | || || || | | | ||||| |||| |||| ||| || | | ||||| | | |
Sbjct 825 CCTTC-AA-ATA-CTATATATGGGGAT-AAAT-AGTTTCACGGGTACC-ATTCC-AGAGA 877
Query 874 CACTTGCCAATATCTCAAGCCTT-GA-ATGGTTTGATATCTCA-TCTAATTACCTGACTG 930
||||| ||||||||||||| ||| || | || ||||| || ||||| | || ||||
Sbjct 878 CACTTTCCAATATCTCAAGTCTTCGACAAC-TT-GATAT-TCCGTCTAACCATCTTACTG 934
Query 931 GAA-GTATCCCTTTGAGCTTT-GGAA-AGTT-ACGTAATCTGTGG-TGGTTAGGAATTCG 985
||| | || || ||||| ||| |||| | || | | ||||| | || | ||| ||
Sbjct 935 GAAAG-ATACCATTGAG-TTTCGGAAGACTTCA-G-AATCTATTACTGCT-AGGCCTTAA 989
Query 986 TAATAACTCTCTTGGATA-TAACTCGTCCAGTGGTCTTGAATTTATTGGTGCTTTGGCGA 1044
|||||||||||| ||| | || ||| || ||| |||||| ||| ||||||| || | |
Sbjct 990 TAATAACTCTCTGGGAAACTA-CTCTTCTGGTGATCTTGATTTTCTTGGTGCACTGACTA 1048
Query 1045 ACTGCACTCAATTAG-AGTACTTAGA-TGTTGG-TTACAATAGACTTGGAGGTGAGCTGC 1101
|||||| ||| || | |||| || || |||||| || ||| | ||| || ||| || |||
Sbjct 1049 ACTGCAGTCAGTT-GCAGTATTT-GAATGTTGGCTT-CAACAAACTCGGCGGTCAGTTGC 1105
Query 1102 CTGCCTCCATGGCCAATCTGTCCACTAAATTGACT-AG-TCTGTTCCTTGGACAAAATCT 1159
||| || || |||||||| ||||| |||| ||| || ||| | | |||| ||||||
Sbjct 1106 CTGTCTTTATAGCCAATCTCTCCACCCAATTAACTGAGCTCTCT-C-TTGGTGGAAATCT 1163
Query 1160 TATCTCTGGAACCATTCCTTACGACATCGGGAATCTTATAAGCCTGCAAGA-ACTCAGT- 1217
|||||||||| |||||| | | ||| ||||||||| ||||||||||| | | | ||
Sbjct 1164 CATCTCTGGAAGTATTCCTCATGGCATAGGGAATCTTGTAAGCCTGCAA-ACATT-AGAC 1221
Query 1218 TTGGAA-ACAAATAAGTTGTCTGG-AGAACTTCCAGTCTCTTTCGG-GAAGCTTT-TGAA 1273
|||| | |||| |||| | || | ||||||| ||| || || ||| |||| ||||
Sbjct 1222 TTGGGCGA-AAATCTGTTGACAGGCA-AACTTCCTCCCTCATTGGGAGAA-CTTTCTGAA 1278
Query 1274 TTT-GCAG-GTGGTGGATCTCTATTCAAATGCAATATCGGGGGAAATACCATCTTATTTT 1331
|| | | || || ||||||||||||| | | || || || |||||||||| ||
Sbjct 1279 TTGAGAAAAGTCTTG---CTCTATTCAAATGGACTGTCTGGAGAGATACCATCTTCCTTG 1335
Query 1332 GGCAACATGACTCGGTTG-CAGAAGCTCCATTTGAATAGCAATAGTTTCCACGGAAGAAT 1390
|| || || | | || | || | || || || || ||| ||||| | ||||| ||
Sbjct 1336 GGGAATATCAGTGGGCTAACATAC-CTGTATCTGCTTAACAACAGTTTTGAAGGAAGCAT 1394
Query 1391 CCCT-CAGAGTCTTGGACGTTGTCAA-TAC-TTGCTAGACCTGTGGAT-T-GATACAAAT 1445
|||| || ||||||||| |||| || ||| || |||||| | || | | | ||| |||
Sbjct 1395 CCCTTCA-AGTCTTGGAAGTTG-CAGCTACCTT-CTAGAC-T-TGAACCTCGGTACTAAT 1449
Query 1446 AGGTTGAATGGGA-CTATACCTCGGGAAAT-ACTGCAAATTCCGTCCCTCG-CTTACATA 1502
| ||||||||| | | ||||| | || | | || || |||| || || | | | | ||
Sbjct 1450 AAGTTGAATGGCAGC-ATACCCCATGAGCTTA-TGGAACTTCCATCTCTTGTCGT-CTTA 1506
Query 1503 GATTTGTCAAACAATTTCTTGACCGGCCATTTTCCAGAAGA-AGTTGGAAAG-TTGGAAC 1560
|| | ||| ||||| ||| |||| ||| | |||| | |||||||| || ||
Sbjct 1507 AATGTCTCATTTAATTTGTTGGTTGGCCCTTTGAGACAAGACA-TTGGAAAGCTTA-AAT 1564
Query 1561 TTCTTGTTGGA-CTAGGTGCTTCGTACAACAAATTATCAGGACAGATCCCACAAGC-TAT 1618
|||| || | |||| | ||| ||||| ||| ||||||||||||| |||||| | | |
Sbjct 1565 TTCTA-TTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACAAACCT-T 1622
Query 1619 AGGGGG-TTGTCTCTCGA-TGGAATTTCTTTATA-TGCAAGGAAATTCGTTTGACGGAGC 1675
|| | ||||||||| | | ||||| |||| | ||||||| ||||| |||| || ||
Sbjct 1623 -GGCGAATTGTCTCTC-ACTAGAATTCCTTT-TGCTGCAAGGGAATTCATTTGTTGG-GC 1678
Query 1676 C-ATTCCAGATATAAGTCGGTTGG-TAAGCCTAACGAATGTT-GA-CTTCTCCAACAACA 1731
| |||||||||||||| ||||| | |||| | || | | || || || || || |
Sbjct 1679 CCATTCCAGATATAAGAGGGTTGACTG-GCCTCA-GATTCCTAGATCTG-TCGAAGAATA 1735
Query 1732 ATCTCTCTGGC-CGGATACCTCGA-TATCTGGCCAA-TCTACCTTTGTTGC-GAAATCTG 1787
|||||||||| | |||||| || ||| |||| || | | || | || ||| |||
Sbjct 1736 ATCTCTCTGGTACA-ATACCT-GAATATATGGCGAACTTTTCCAAACT-GCAGAAC-CTG 1791
Query 1788 AATCTTTCTATGAACAATTTTGAGGGAAGC-GTGCCAACA-ACAGGAGTGTTCCGAAATG 1845
||||| ||| ||||||| || || ||| || |||||||| | ||| || || || |||
Sbjct 1792 AATCTCTCTTTGAACAACTTCGACGGA-GCTGTGCCAACGGA-AGGGGTATTTCGTAATA 1849
Query 1846 CTACAGCAGTT-TCTGTTTTTGGTAACAAAAATATATGCGGAGGCATC 1892
| | || | | || || |||||||||| ||| | || |||||||||
Sbjct 1850 CCAGTGC-GATGTCGGTCTTTGGTAACATAAACCTCTGTGGAGGCATC 1896
> AT1G09995.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D
subfamily protein | chr1:3262265-3263612 REVERSE LENGTH=724
Length=724
Score = 135 bits (73), Expect = 2e-30
Identities = 93/102 (91%), Gaps = 3/102 (3%)
Strand=Plus/Plus
Query 121 AAGTTTTGCTTGAGTTCAAGTCTCAAGTTTCT-G-AA-AACAAGAGAGAGGTCTTGGCCT 177
||| |||||||||||||||||||||||||||| | || ||||||||||||||| |||| |
Sbjct 581 AAGCTTTGCTTGAGTTCAAGTCTCAAGTTTCTGGAAACAACAAGAGAGAGGTCATGGCTT 640
Query 178 CATGGAATCACTCCTCCCCATTATGCAATTGGATTGGAGTCA 219
||||||||||||||||| |||| || ||||||||||||||||
Sbjct 641 CATGGAATCACTCCTCCACATTTTGTAATTGGATTGGAGTCA 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164146237496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5