BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488958
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20540.1 | Symbols: ATBRXL4, BRX-LIKE4, BRXL4 | BREVIS RADIX... 2276 0.0
> AT5G20540.1 | Symbols: ATBRXL4, BRX-LIKE4, BRXL4 | BREVIS RADIX-like
4 | chr5:6947843-6952038 FORWARD LENGTH=1533
Length=1533
Score = 2276 bits (1232), Expect = 0.0
Identities = 1408/1490 (94%), Gaps = 23/1490 (2%)
Strand=Plus/Plus
Query 1 AAAGTAGAAGAAACTGACAACAtctctgtctctctctctcCGTATCcaaaaagag-aa-a 58
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1 AAAGTAGAAGAAACTGACACCATCTCTGTCTCTCTCTCTCCGTATCCAAAAAGAGAAAGA 60
Query 59 aaacaaa--tcaaatcaaaGACCAAGCCAGTCGCCGGAAAATGCTGACGTGTATACCTCG 116
||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 61 AAAAAAATCTCAAATCAAAGACCAAGCCAGTCACCGGAAAATGCTGACGTGTATAGCTCG 120
Query 117 TTCAAAACGAGCCGACGATGAATCCTCCGGTCAACCCGACGATCCAGATTCTAAACACGC 176
||| || ||||| | ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 121 TTCGAAGCGAGCAGGCGATGAATCCTCCGGTCAACCAGACGATCCAGATTCTAAAAACGC 180
Query 177 CAAATCTCTAACATCTCAGCTCAAAGATATGGCTCTTAAAGCATCAGGAGCTTACCGGCA 236
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CAAATCTCTAACATCTCAGCTCAAAGATATGGCTCTGAAAGCATCAGGAGCTTACCGGCA 240
Query 237 TTGTACGCCGTGCACGGCGGCGCAAGGTCAGGGACAAGGACAGGGTCCGATCAAGACCAA 296
|||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 241 TTGTACGCCGTGTACGGCGGCACAAGGTCAGGGACAAGGACAAGGTCCGATCAAGAACAA 300
Query 297 TCCGTCAACGTCGTCGGTAAAGTCGGATTTCGAATCGGATCAACGGTTTAAAATGCTGTA 356
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TCCGTCGTCGTCGTCGGTAAAGTCGGATTTCGAATCGGATCAACGGTTTAAAATGCTTTA 360
Query 357 CGGAAGATCAAACAGTTCGATTACATCTACGGCGGCGGCGACGGCGGCGAC-GCAGCAAC 415
||||||||||||||||||||||||| |||||||||||| | ||||| || | || ||||
Sbjct 361 CGGAAGATCAAACAGTTCGATTACAGCTACGGCGGCGGTGGCGGCGACG-CAACAACAAC 419
Query 416 AGCCTAGGGTTTGGGGGAAGGAGATGGAAGCGAGGCTTAAAGGGATATCGAGCGGCGAAG 475
|||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct 420 AGCCTAGGGTTTGGGGAAAGGAGATGGAAGCGAGACTAAAAGGGATTTCGAGCGGCGAAG 479
Query 476 CGACTCCGAAATCGGCGAGTGGGAGAAACCGGGTCGACCCGATTGTGTTTGTGGAGGAGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGACTCCGAAATCGGCGAGTGGGAGAAACCGGGTCGACCCGATTGTGTTTGTGGAGGAGA 539
Query 536 AAGAGCCTAAAGAATGGGTTGCTCAGGTTGAGCCCGGAGTTCTCATAACCTTCGTTTCTC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGAGCCTAAAGAATGGGTTGCTCAGGTTGAGCCCGGAGTTCTCATAACCTTCGTTTCTC 599
Query 596 TTCCCGGCGGTGGTAACGATCTCAAGCGGATACGTTTCAGCCGAGACATGTTCAACAAGT 655
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCCCGGCGGTGGTAATGATCTCAAGCGGATACGTTTCAGCCGAGACATGTTCAACAAGT 659
Query 656 TACAAGCTCAACGATGGTGGGCAGATAACTATGACAAAGTAATGGAACTTTACAATGTTC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TACAAGCTCAACGATGGTGGGCAGATAACTATGACAAAGTAATGGAACTTTACAATGTTC 719
Query 716 AAAAACTAAGCCGACAAGCTTTCCCGCT-CCCTACGCCC-CCTAGATCGGAAGACGAGAA 773
||||||||||||| |||||||||||||| ||| || ||| |||||||| |||||||||||
Sbjct 720 AAAAACTAAGCCGCCAAGCTTTCCCGCTTCCC-AC-CCCGCCTAGATCCGAAGACGAGAA 777
Query 774 AGCAAAAGTGGAGTACCATCTAGAGGACACTCCTGCAACACCGCCTCTAAACAAAGAACG 833
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 778 TGCAAAAGTGGAGTACCATCCAGAAGACACTCCTGCAACACCGCCTCTAAACAAAGAACG 837
Query 834 GTTGCCTCGTAATATCCATCGTCCAGCTGGATTGGCGGCTTACTCATCCTCGGATTCACT 893
||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 838 GTTGCCTCGTACTATCCATCGTCCACCTGGATTGGCTGCTTACTCATCCTCAGATTCACT 897
Query 894 CGACCATAATTCAATGCAAAGCCAGCAGTTTTATGACTCTGGTCTACTCAACTCAACTCC 953
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 898 CGACCATAATTCAATGCAGAGCCAGCAGTTCTATGACTCTGGTCTACTCAACTCAACTCC 957
Query 954 TAAAGTTTCAAGCATCAGTGTAGCCAAGACAGAAACTTCTTCCATAGATGCTTCCATAAG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TAAAGTTTCAAGCATCAGTGTAGCCAAGACAGAAACTTCTTCCATAGATGCTTCCATAAG 1017
Query 1014 AAGCAGCTCGTCAAGAGATGCAGACAGGTCAGAGGAAATGTCGGTGAGCAATGCGAGTGA 1073
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1018 AAGCAGCTCGTCGAGAGATGCAGACCGGTCAGAGGAAATGTCGGTAAGCAATGCGAGTGA 1077
Query 1074 TGTTGACAACGAATGGGTGGAGCAAGATGAGCCTGGCGTTTATATCACCATTAAAGTTTT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGTTGACAACGAATGGGTGGAGCAAGATGAGCCTGGCGTTTATATCACCATTAAAGTTTT 1137
Query 1134 ACCAGGTGGGAAAAGAGAGCTTAGAAGAGTCAGATTCAGCCGAGAGAGATTCGGGGAGAT 1193
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACCAGGTGGGAAAAGAGAGCTTCGAAGAGTCAGATTCAGCCGAGAGAGATTCGGGGAGAT 1197
Query 1194 GCACGCGAGATTATGGTGGGAAGAGAACAGAGCAAGGATACATGAACAATACTTGTGAAT 1253
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1198 GCACGCGAGATTATGGTGGGAAGAGAACAGGGCAAGGATACATGAACAATACTTGTGA-T 1256
Query 1254 TGTGA-TC-AAGGGCTTTGTTTCTTTCCTCATTCTCTCGGTATACAGttttttttttCCA 1311
| | || ||| | ||||||| ||||||||||||||||||||||||| ||||||| |||
Sbjct 1257 CATAAATCTAAGAGTTTTGTTT-TTTCCTCATTCTCTCGGTATACAGTCTTTTTTT-CCA 1314
Query 1312 GCTCAAGTAAATTTCTTCCACAGGTACTCATTGTGCCTCCCAAAAATCTCAAAATATCAA 1371
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1315 GCTCAAGTAAATT-CTTCCACAGGTACTCATTGTGCCTCCCAGAAATCTCAAAATATCAA 1373
Query 1372 TTGTGGAATATTTTTTAAGGAGGTTTCTTATGCTCTTCCTT-AAAAAAGATT-GCA-AAA 1428
|||||| |||| ||||||||||||||||||| |||||||| |||||| ||| | | |||
Sbjct 1374 TTGTGGGATATGTTTTAAGGAGGTTTCTTATTTTCTTCCTTCAAAAAA-ATTTG-AGAAA 1431
Query 1429 GCTTGGAAAATATATA-ATGTTGTCTTCTTTGCTCCATATGTGTATCCTT 1477
|||||||||| ||| | ||||||||| |||||||| ||||||||||||||
Sbjct 1432 GCTTGGAAAAGATA-AGATGTTGTCTCCTTTGCTCAATATGTGTATCCTT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5