BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488959
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20560.1 | Symbols: | Glycosyl hydrolase superfamily protei... 691 0.0
> AT5G20560.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr5:6955368-6956381 FORWARD LENGTH=1014
Length=1014
Score = 691 bits (374), Expect = 0.0
Identities = 404/419 (96%), Gaps = 0/419 (0%)
Strand=Plus/Plus
Query 512 CAAGTACACCGATATTCGTCAATATCTATCCTTACTACTTCTATGCGTCCGACCCAAAGA 571
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 590 CAAGTACACCGATCTTCGTCAATATCTATCCTTACTACTTCCATGCCTCCGACCCAAAGA 649
Query 572 ACGTCCCTCTCGAGTACACTAATTTCAATACCGACCAGATCGTGGTCAAGGACGGTGCAC 631
||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||||
Sbjct 650 ACGTCCCTCTCGAGTACGCCAATTTCAATAACGACCAGATCGTGGTCAAAGACGGTGCAC 709
Query 632 TAAAATATTCCAACTTGTTTGATGCAATTTTCGACGCTTTTCTGTGGGCAATGGAGAAAG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TAAAATATTCCAACTTGTTTGATGCAATTTTCGACGCTTTTCTGTGGGCAATGGAGAAAG 769
Query 692 AGGGAGTGAAAGGTTTACCTTTGGTGGTGTCAGAGACTGGGTGGCCCTCTGCCGGGAATG 751
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 770 AGGGAGTGAAAGGTTTACCTTTGGTGGTGTCGGAGACCGGGTGGCCCTCTGCCGGGAATG 829
Query 752 GAGGTATGACGACGCCGGCTCTTCAATATACGTACATTGGTAACTTTGTGAAGCATGTGG 811
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 830 GAGGCATGACGACACCGGCTCTTCAATATACGTACATTGGTAACTTTGTGAAGCATGTTG 889
Query 812 CAAGCGGTAAAGGAACGCCTAAGAGGCCAAATAGTAGAATTGATGGGTATATATTTGAGA 871
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 890 CAAGTGGTAAAGGAACGCCTAAGAGGCCAAATAGTAGAATTGATGCGTATATATTTGAGA 949
Query 872 CATACAATGAGAACCAGAAGCCAGTTGGAATCTATCAGCATTTTGGGTTATACGATCCT 930
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CGTACAATGAGAACCAGAAGCCAGTTGGAATCTATCAGCATTTTGGGTTATACGATCCT 1008
Score = 623 bits (337), Expect = 1e-177
Identities = 393/421 (93%), Gaps = 0/421 (0%)
Strand=Plus/Plus
Query 3 GGACTATTCTAAGAAGTTGTTCCTAGTACTTCTCTCATGCGTAGCGTTGATTATCAGCTA 62
||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 6 GGACTATTCTAAGAACTTGTTCCTATTACTTTTCTCATGCACAGCGTTGATTATCAGCTA 65
Query 63 CAACAAAGTTGATTCCTTAAGCACAACATCAGTCGTCGGATTGAACTACGGCCTCCTCGG 122
| |||| |||||||| ||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 66 CTACAACGTTGATTCTTTAAGTACTGCATCAGTCGTCGGATTGAATTACGGACTCCTCGG 125
Query 123 AGACAACCTCCCATCTCCGTCCAATGTTATCAAGTTCTACAAATCTCAAAATGTTGCGAA 182
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 126 AGACAACCTCCCATCTCCGTCCAATGTTATCAAGTTCTACAAATCTCAAAACGTTGCGAA 185
Query 183 AATCAGGATATTCGAGCCAAACAAGGACGTCCTAAACGCCTTGCGTGGAAACCGAGAGAT 242
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 186 AATCAGGATATTCGAGCCAAACAAAGACGTCCTAAACGCTTTGCGTGGAAACCGAGATAT 245
Query 243 CGGAGTCACCGTAGGCATCAAGAACGAAGACTTGGCGGCTCTTGCAGCCAACAAAGACGC 302
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 246 TGGAGTCACCGTAGGCATCAAGAACGAAGACTTGGAGGCACTTGCAGCCAACAAAGACGC 305
Query 303 AATTAAATCCTGGTTCGCCACTAACATTGATCCTTACATAGCCGACGTCAACATAACATT 362
| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 306 AGTTAAATCCTGGTTCTCCACTAACATTGATCCTTACATAGCCGACGTGAACATAACATT 365
Query 363 TATTACCGTCGGAAACCAAGCGATCCCGGGCGACATATATGGCCCCCACGTGCTTCCTGT 422
|||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||
Sbjct 366 CATTACCGTCGGAAACCAAGCCATCCCGGGCGACAAACATGGCCCTCACGTGCTTCCTGT 425
Query 423 C 423
|
Sbjct 426 C 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5