BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488959 Length=963 Score E Sequences producing significant alignments: (Bits) Value AT5G20560.1 | Symbols: | Glycosyl hydrolase superfamily protei... 691 0.0 > AT5G20560.1 | Symbols: | Glycosyl hydrolase superfamily protein | chr5:6955368-6956381 FORWARD LENGTH=1014 Length=1014 Score = 691 bits (374), Expect = 0.0 Identities = 404/419 (96%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 512 CAAGTACACCGATATTCGTCAATATCTATCCTTACTACTTCTATGCGTCCGACCCAAAGA 571 ||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 590 CAAGTACACCGATCTTCGTCAATATCTATCCTTACTACTTCCATGCCTCCGACCCAAAGA 649 Query 572 ACGTCCCTCTCGAGTACACTAATTTCAATACCGACCAGATCGTGGTCAAGGACGGTGCAC 631 ||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||| Sbjct 650 ACGTCCCTCTCGAGTACGCCAATTTCAATAACGACCAGATCGTGGTCAAAGACGGTGCAC 709 Query 632 TAAAATATTCCAACTTGTTTGATGCAATTTTCGACGCTTTTCTGTGGGCAATGGAGAAAG 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 TAAAATATTCCAACTTGTTTGATGCAATTTTCGACGCTTTTCTGTGGGCAATGGAGAAAG 769 Query 692 AGGGAGTGAAAGGTTTACCTTTGGTGGTGTCAGAGACTGGGTGGCCCTCTGCCGGGAATG 751 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 770 AGGGAGTGAAAGGTTTACCTTTGGTGGTGTCGGAGACCGGGTGGCCCTCTGCCGGGAATG 829 Query 752 GAGGTATGACGACGCCGGCTCTTCAATATACGTACATTGGTAACTTTGTGAAGCATGTGG 811 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 830 GAGGCATGACGACACCGGCTCTTCAATATACGTACATTGGTAACTTTGTGAAGCATGTTG 889 Query 812 CAAGCGGTAAAGGAACGCCTAAGAGGCCAAATAGTAGAATTGATGGGTATATATTTGAGA 871 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 890 CAAGTGGTAAAGGAACGCCTAAGAGGCCAAATAGTAGAATTGATGCGTATATATTTGAGA 949 Query 872 CATACAATGAGAACCAGAAGCCAGTTGGAATCTATCAGCATTTTGGGTTATACGATCCT 930 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 CGTACAATGAGAACCAGAAGCCAGTTGGAATCTATCAGCATTTTGGGTTATACGATCCT 1008 Score = 623 bits (337), Expect = 1e-177 Identities = 393/421 (93%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 3 GGACTATTCTAAGAAGTTGTTCCTAGTACTTCTCTCATGCGTAGCGTTGATTATCAGCTA 62 ||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 6 GGACTATTCTAAGAACTTGTTCCTATTACTTTTCTCATGCACAGCGTTGATTATCAGCTA 65 Query 63 CAACAAAGTTGATTCCTTAAGCACAACATCAGTCGTCGGATTGAACTACGGCCTCCTCGG 122 | |||| |||||||| ||||| || ||||||||||||||||||| ||||| |||||||| Sbjct 66 CTACAACGTTGATTCTTTAAGTACTGCATCAGTCGTCGGATTGAATTACGGACTCCTCGG 125 Query 123 AGACAACCTCCCATCTCCGTCCAATGTTATCAAGTTCTACAAATCTCAAAATGTTGCGAA 182 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 126 AGACAACCTCCCATCTCCGTCCAATGTTATCAAGTTCTACAAATCTCAAAACGTTGCGAA 185 Query 183 AATCAGGATATTCGAGCCAAACAAGGACGTCCTAAACGCCTTGCGTGGAAACCGAGAGAT 242 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 186 AATCAGGATATTCGAGCCAAACAAAGACGTCCTAAACGCTTTGCGTGGAAACCGAGATAT 245 Query 243 CGGAGTCACCGTAGGCATCAAGAACGAAGACTTGGCGGCTCTTGCAGCCAACAAAGACGC 302 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 246 TGGAGTCACCGTAGGCATCAAGAACGAAGACTTGGAGGCACTTGCAGCCAACAAAGACGC 305 Query 303 AATTAAATCCTGGTTCGCCACTAACATTGATCCTTACATAGCCGACGTCAACATAACATT 362 | |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 306 AGTTAAATCCTGGTTCTCCACTAACATTGATCCTTACATAGCCGACGTGAACATAACATT 365 Query 363 TATTACCGTCGGAAACCAAGCGATCCCGGGCGACATATATGGCCCCCACGTGCTTCCTGT 422 |||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||| Sbjct 366 CATTACCGTCGGAAACCAAGCCATCCCGGGCGACAAACATGGCCCTCACGTGCTTCCTGT 425 Query 423 C 423 | Sbjct 426 C 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47119629886 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5