BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488960
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20570.2 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | ... 484 3e-136
AT3G42830.1 | Symbols: | RING/U-box superfamily protein | chr3... 287 1e-76
> AT5G20570.2 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1
| chr5:6956660-6958311 REVERSE LENGTH=764
Length=764
Score = 484 bits (262), Expect = 3e-136
Identities = 313/338 (93%), Gaps = 2/338 (1%)
Strand=Plus/Plus
Query 1 TCTCTCCACAAC-AAACCAAGCGAGAGCTCAAACTTTGAGATTTTTCTTCGGCTTTTCTA 59
|||||| ||||| ||| | ||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 1 TCTCTCTACAACAAAATC-AGCGACAGCTCAAACGTTGATATTTTTCTCCGGCTTTTCTA 59
Query 60 GGGTTTTAATTTTCCTTCCGATCAGAGATTAATGGCGAATCTGGACTCCGACGTTACCAT 119
|||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 60 GGGTTTAAATTTTCTTTCCGATCAGAGATTAATGGCGACTCTAGACTCCGACGTTACCAT 119
Query 120 GATTCCTGCCGGAGAAGCCTCCAGCAGCGTAGCCGCTTCGTCTTCCAACAAGAAAGCTAA 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 GATTCCTGCCGGAGAAGCCTCCAGCAGCGTAGCCGCGTCGTCTTCCAACAAGAAAGCTAA 179
Query 180 GCGATTCGAGATTAAAAAGTGGAGCGCCGTTGCTCTCTGGGCTTGGGATATCGTTGTTGA 239
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCGATTCGAAATTAAGAAGTGGAGCGCCGTTGCTCTCTGGGCTTGGGATATCGTTGTTGA 239
Query 240 CAACTGTGCGATCTGCAGAAACCACATCATGGATCTGTGCATTGAATGTCAAGCTAATCA 299
|||||||||||||||||||||||||||||||||||| || || || ||||| ||||||||
Sbjct 240 CAACTGTGCGATCTGCAGAAACCACATCATGGATCTTTGTATCGAGTGTCAGGCTAATCA 299
Query 300 GGCCAGCGCTACAAGTGAGGAATGCACTGTTGCTTGGG 337
|||||| || |||||||| || |||||||| |||||||
Sbjct 300 GGCCAGTGCCACAAGTGAAGAGTGCACTGTAGCTTGGG 337
Score = 396 bits (214), Expect = 2e-109
Identities = 295/331 (89%), Gaps = 17/331 (5%)
Strand=Plus/Plus
Query 336 GGGGGTTTGTAATCACGCCTTCCACTTTCACTGCATCAGCAGATGGTTAAAGACTCGTCA 395
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 408 GGGGGTTTGCAATCACGCCTTCCACTTTCACTGCATCAGCAGATGGCTAAAGACTCGTCA 467
Query 396 AGTTTGTCCATTGGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAAATCAACAA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AGTTTGTCCATTGGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAAATCAACAA 527
Query 456 ATGGTTCCAGCAAACATGTGTCTAATCGTGAAGATATCAGGTTCATTTGGTTACCACCGC 515
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 528 ATGGTTCCAGCAAGCATGTGTCTAATCGTGAAGACATCAGGTTCATTTGGTTACCACCGC 587
Query 516 ATATGATAACTAAAGATTGTTCAAGTTTT-GCTTCtttttttttttttttGTACTGTATT 574
||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 588 ATATGATAACTAAAGATTGTTCAAGTTTTTGCC-CTTTTTTTG-------GTACTGTATT 639
Query 575 TCT-CAAATTGTGGGAACGGAGGTTTACTGTTCACTGAAC-CTATTATCG-TTGTGCTT- 630
| | ||| |||||| ||| ||| ||||||||||| || | ||| | | || || ||
Sbjct 640 T-TACAATTTGTGGAAACAGAGATTTACTGTTCAGTGTTCACTAA-ACCTATTATGGTTG 697
Query 631 TGGCCTTTGGGTGACGTCTTTGATTTTAAAA 661
|| | ||||||||||||||||||||| ||||
Sbjct 698 TG-C-TTTGGGTGACGTCTTTGATTTCAAAA 726
> AT3G42830.1 | Symbols: | RING/U-box superfamily protein | chr3:14929714-14930678
REVERSE LENGTH=348
Length=348
Score = 287 bits (155), Expect = 1e-76
Identities = 249/295 (84%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 155 CTTCGTCTTCCAACAAGAAAGCTAAGCGATTCGAGATTAAA-AAGTGGAGCGCCGTTGCT 213
|||| ||||| |||||| | || ||||| || |||||| |||||||| || || |||
Sbjct 56 CTTCATCTTCGTCCAAGAACTCGAAACGATTTGA-ATTAAAGAAGTGGAGTGCTGTCGCT 114
Query 214 CTCTGGGCTTGGGATATCGTTGTTGACAACTGTGCGATCTGCAGAAACCACATCATGGAT 273
|||||||||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct 115 CTCTGGGCTTGGGATATCGTTGTTGATAACTGCGCAATTTGTAGGAATCACATCATGGAT 174
Query 274 CTGTGCATTGAATGTCAAGCTAATCAGGCCAGCGCTACAAGTGAGGAATGCACTGTTGCT 333
|| || |||||||||| ||||||||| || || || || |||||||||||||||||||||
Sbjct 175 CTCTGTATTGAATGTCTAGCTAATCAAGCTAGTGCCACTAGTGAGGAATGCACTGTTGCT 234
Query 334 TGGGGGGTTTGTAATCACGCCTTCCACTTTCACTGCATCAGCAGATGGTT-AAAGACTCG 392
||||||||||| || |||||||| ||||| ||||| |||||||||||| | ||| |||||
Sbjct 235 TGGGGGGTTTGCAACCACGCCTTTCACTTCCACTGTATCAGCAGATGGCTCAAA-ACTCG 293
Query 393 TCAAGTTTGTCCATTGGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAA 447
|||||| |||||| | ||| | | |||||||| || ||||||||||||||||||
Sbjct 294 TCAAGTGTGTCCACTAGATGTCTGCGAGTGGGAATTCCAGAAATATGGTCACTAA 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5