BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488961
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20580.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2141 0.0
> AT5G20580.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1); Has
167 Blast hits to 167 proteins in 73 species: Archae - 0;
Bacteria - 25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses
- 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr5:6958628-6962804
REVERSE LENGTH=1421
Length=1421
Score = 2141 bits (1159), Expect = 0.0
Identities = 1314/1388 (95%), Gaps = 14/1388 (1%)
Strand=Plus/Plus
Query 1 TTGATTGATTGATTTGACAGTGAAGATTTCT-ATTCTTACGCTTGCTCTTCACATCTCCC 59
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 30 TTGATTGATTGATTTCACAGTGAAGATTTCTAATTCTTACGCTTGCTCTTCACATCTCTC 89
Query 60 AAATCTCCAGATTGGAGCAACGAATATGATTCAACCCTAATTTCAAGCAAAAGCCCCTCT 119
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 90 AAATCTCCAGATTGGAGCAACGAATCTGATTCAACCCTAATTTCAAGCAAAA-ACCC-C- 146
Query 120 TTTTA-CAAGTCTCGGAGATTACATACAGTCTTCACTCCAACAAACCAAAGAAGAAACCC 178
||| |||| ||| |||||||||||||||| ||||||||||| || | |||||| ||||
Sbjct 147 --TTACCAAGCCTCTGAGATTACATACAGTCGTCACTCCAACATACGAGAGAAGATACCC 204
Query 179 AAACCAAAATGGCTAACGATCGACGCGCTTCTTCTGTCAATCCGACGACGGAGCAAGACA 238
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 205 AAACCAAAATGGCCAACGATCGACGCGCTTCTTCTGTCAATCCGTCGACGGAGCAAGACA 264
Query 239 ATGCTATGTTTCTTGATATACTGCATGAAGCTCCTCTATTCGGTCATCGAGAATCGAGAA 298
|||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||
Sbjct 265 ATGCTATGTTTCTTGATATATTGCATGAAGCTCCTCTCTTTGGTCATCGTGAATCGAGAA 324
Query 299 GTCTCGTTGGAAGCTGCATTTATCTTATCATATTGGCAGGTTATGCTATTTTAGCAGCAG 358
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 325 GTCTTGTTGGAAGCTGCATTTATCTTATCATATTGGCATGTTATGCTATTTTAGCAGCAG 384
Query 359 GGGCACCGTGGATACTTCAGTCTGTAGAGTATCTTATCCCATCGCTGCTTTGCAGCTGCA 418
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 385 GGGCACCGTGGATACTTCAGTCTGTAGACTATCTTATCCCATCGCTGCTTTGCAGCTGTA 444
Query 419 ATGTTGCTCTCTTGATGTTAACAGGTATGTTTCAGCAATATTTTGTCAATCAGGTCCAGA 478
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATGTTGCTTTATTGATGTTAACAGGTATGTTTCAGCAATATTTTGTCAATCAGGTCCAGA 504
Query 479 AAATACGCTTGCAGGGTTATTACAGTTTCAGTCAGAAATTGAAACATGTAGTTCGTCTGC 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 505 AAATACGCTTGCAGGGTTATTACAGTTTCAGTCAGAAACTGAAACATGTAGTTCGTCTGC 564
Query 539 CATTTGCAATCATGGCCTATGGGACTGCATCTATGCTACTTTTCATGGTGTGGAGACCAT 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 565 CATTTGCAATCATGGCCTATGGGACTGCATCTATGCTACTTTTCATGGAGTGGAGACCAT 624
Query 599 ATGTCAGTGTTCTTCCCATTTTTACTGTGCAAAGGTTCATCATGTCTGTTGAAGCAATTT 658
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 ATGTCAGTGTTCTACCCATTTTTACTGTGCAAAGGTTCATCATGTCTGTTGAAGCAATTT 684
Query 659 CTGCGGCTTCTTTTATGATTGTATTTGTTGGTTATGTTCGCCAGTATAACTCAGTGAACT 718
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 685 CTGCTGCTTCTTTTATGATTGTATTTGTTGGTTATGTTCGCCAGTATAACTCAGTGAATT 744
Query 719 CTCAGCCCGATGTCTTAAATTCATTATATTCTCCTCTTCAACCAGCTGCTTTGGAAGGAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CTCAGCCCGATGTCTTAAATTCATTATATTCTCCTCTTCAACCAGCTGCTTTGGAAGGAT 804
Query 779 TGAGATACCATGAAGCTGGTCGCCTCTCTGATCAGCAAATGGCTCTACTGCAATATCAGC 838
|||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 805 TGAGATACCATGAAGCCGGTCGCCTTTCTGATCAACAAATGGCTCTACTGCAATATCAAC 864
Query 839 GTGAGAATCTCCATTATCTCAGTGAAGAGATTCTGCGTTTGCAGGAGTCCTTAAGCAAAT 898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 865 GCGAGAATCTCCATTATCTCAGTGAAGAGATTCTGCGTTTGCAGGAGTCCTTAAGTAAAT 924
Query 899 ATGAAACGAGTGGTAGTAGCACGCCTCAGGTTGATTTGGCGCATCTTGTGGCCACTCGTG 958
||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 925 ATGAAACGAATGGTAGTAGCACGCCTCAGGTTGATCTGGCGCATCTTGTGGCAACTCGAG 984
Query 959 ATCAGGAATTGCGAACACTTTCTGCTGAGGTGGATCAACTCCATTCAGAGCTTAATCTCG 1018
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 985 ATCAGGAATTACGAACACTATCTGCTGAGGTGGATCAACTCCATTCAGAGCTTAATCTCG 1044
Query 1019 CTCGATCTCTGATCTCTGAGAGAGATAGAGAGATACAGCACGTCCGGAATACCAATAATC 1078
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1045 CTCGATCTCTGATCTCTGAGAGAGATAGAGAGATACAACACGTCCGGAATACCAATAATC 1104
Query 1079 AGTATGTTGCAGAAAATGAAAGGTTAAGAGCTATCCTTGGAGAATGGAGTATGCGCGCTG 1138
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1105 AGTATGTAGCAGAAAATGAAAGGTTAAGAGCTATTCTTGGAGAATGGAGTATGCGAGCTG 1164
Query 1139 CAAAGCTTGAACGAGCTCTGGAGGTGGAGAGAATATCAAATCTTGAACTGCGGAAGAAAG 1198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1165 CAAAGCTTGAACGAGCTCTGGAGGTGGAGAGAATATCAAATATTGAACTGCGGAAGAAAG 1224
Query 1199 TTTCGGCTCTCAGAGACCAGAGGCAAGTGGCATGAAGCATAAACATTCATCTAACAATAT 1258
|||| |||||||||||||||||||| ||||||||||||||| |||| |||||||| |||
Sbjct 1225 TTTCAGCTCTCAGAGACCAGAGGCAGGTGGCATGAAGCATATACAT-CATCTAAC--TAT 1281
Query 1259 ATGTAACTCATATGGCTTGTAGAAAACTATCTTGACACTATTTTGTAACATCTTCATATA 1318
||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| || |
Sbjct 1282 ATGCAACTCTTATGGCTTGTAGAAAAATATCTTGACACTATTTTCTAACATCTTGATGCA 1341
Query 1319 TTTGATTA-GATAAGCTTTTATGATGTAATGATTTTCCAATTAATTTGAACTCTTGC-TA 1376
|| || || | |||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 1342 TT-GAATACGCTAAGCTTTTATGATGTAATGATTTTCCAGTTAATTTGAACTAA-GCGTA 1399
Query 1377 TGTAATGA 1384
||||||||
Sbjct 1400 TGTAATGA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70481565180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5