BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488963
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20590.1 | Symbols: TBL5 | TRICHOME BIREFRINGENCE-LIKE 5 | c... 2505 0.0
> AT5G20590.1 | Symbols: TBL5 | TRICHOME BIREFRINGENCE-LIKE 5 |
chr5:6963438-6966226 FORWARD LENGTH=1757
Length=1757
Score = 2505 bits (1356), Expect = 0.0
Identities = 1545/1635 (94%), Gaps = 17/1635 (1%)
Strand=Plus/Plus
Query 1 TGACCAAAGTCGCATCTCACGGTGAGATGAGTTCTGCGTAGCTCCAA---TGGTGGTGGC 57
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 14 TGACCAAAGTCGCATCTCACGGTGAGATGAGTTCTTCGTAGCTCCAATGGTGGTGGTGGC 73
Query 58 TTCACAATGTCGACTTCTTCTTCTTTCCCTCGCACCATCGTCTCCTACACTGTGACAACT 117
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 74 TTCACAATGTCGACTTCTTCTTCTTTCCCTCGAACCATCGTCTCCTACACTGTGACAACT 133
Query 118 TCGCTCTTCGTCGTTATCTTCCTATGCAGCGTCTTCTTCTTCACGAGACGCTCTCTCGAA 177
||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 134 TCGCTCTTCATCGTTATCTTCCTATGCAGCGTCTTCTTCTTCACTAGACGCACTCTCGAA 193
Query 178 CCTTCTCTCTCTCCTTACTACGCCGCCGACATCCCTCTCTCCGCCGTCGATCTACCCCCT 237
|||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |||
Sbjct 194 CCTTCTCTCTCTCCTTACCACACCGCCGACATCCCTCTCCCCGCCGTCGATCTACCACCT 253
Query 238 CCTACGCCTCTCCTCCCTCAAATCGAACCTCACGATGGTAACGTCACCGTGGAAACGAAA 297
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 254 CCTACGCCTCTCCTCCCTCAAATCGAGCCTCACGATGGTGACGTCACCGTGGAAACGAAT 313
Query 298 CAAAAGGAGGTAGGAGATTCGCGCCGCGGCGGCGATGACGTCGCGGTAGAGACTGAGCTG 357
| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 314 CCTAAGGAGGTAGAAGATTCGCGCCGCGGAGGCGATGACGTCGCGGTAGAGACTGAGCTG 373
Query 358 AAACTAAAAGATGTAGAAGATTCGCGCACGGAGAAAACTGAAGTGGAAGAAGAAGGCGGA 417
||||| |||||||| |||||||||| |||||||||||| || | ||| |||||||| ||
Sbjct 374 AAACTGAAAGATGTGGAAGATTCGCACACGGAGAAAACCGAGGAGGAGGAAGAAGGTAGA 433
Query 418 GAAGGATCG--C------G---CGGT-GAATCTGTGGACCATGCGGTGGTCGAGAAGATG 465
| || |||| | | | || ||||||||||| ||||||||| | |||||||||
Sbjct 434 GGAGAATCGCCCGGTGAAGTTTCCGTAGAATCTGTGGAACATGCGGTGATTGAGAAGATG 493
Query 466 AGAGGCTGTGATTTGTACAGGGGATCGTGGGTTAAGGACGATGATGAGTATCCATTGTAT 525
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 494 AGAGGCTGTGATTTGTACAAGGGATCGTGGGTTAAGGGCGATGATGAGTATCCATTGTAT 553
Query 526 CAGCCTGGATTGTGTCCTTATGTGGATGAAGCTTTTGATTGCCAGAGGAACGGGAGGCGT 585
|||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 554 CAGCCTGGATCGTGTCCTTATGTGGACGATGCTTTTGATTGCCAGAGGAATGGGAGGCGT 613
Query 586 GATTCCGACTATCTTAATTGGAGATGGAAGCCTGACGGTTGTGACCTTCCACGGTTTAAT 645
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 614 GATTCTGACTATCTTAATTGGAGATGGAAGCCTGACGGTTGTGATCTTCCACGGTTTAAT 673
Query 646 GCTACAGACTTCTTGGTGAAGCTACGAGGTAAAAGTTTGATGTTAGTTGGAGATTCAATG 705
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 674 GCTACAGACTTCTTGGTGAAGCTACGAGGTAAAAGTTTGATGTTGGTTGGAGATTCAATG 733
Query 706 AATCGTAACCAGTTTGAATCAATGCTTTGCGTTCTTCGAGAAGGCTTATCTGATAAGAGT 765
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 734 AATCGTAACCAGTTTGAATCAATGCTTTGCGTTCTACGAGAAGGTTTATCGGATAAGAGT 793
Query 766 AGAATGTACGAGGTTCATGGTCACAATATAACAAAAGGGAGAGGCTACTTTGTATTCAAG 825
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 794 AGAATGTATGAGGTTCATGGCCATAATATAACAAAAGGGAGAGGCTACTTTGTATTCAAG 853
Query 826 TTTGTAGATTACAACTGCACAGTAGAGTTTGT-ACGGTCACATTTTCTTGTGAGGGAAGG 884
|||| |||||| || ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 854 TTTGAAGATTATAATTGCACAGTAGAGTTTGTGA-GGTCACATTTTCTTGTGAGGGAAGG 912
Query 885 AGTTAGAGCAAATGCTCAAGGAAATACTAATCCCACCCTTTCGATTGATCGCATTGACAA 944
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 913 AGTTAGAGCAAATGCTCAAGGAAATACTAATCCGACCCTTTCCATTGATCGCATTGACAA 972
Query 945 GTCACATGCTAAATGGAAGCGAGCTGACATTCTTGTCTTTAACACTGGACATTGGTGGGT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GTCACATGCTAAATGGAAGCGAGCTGACATTCTTGTCTTTAACACTGGACATTGGTGGGT 1032
Query 1005 TCATGGAAAGACCGCCAGAGGGAAAAACTACTACAAAGAAGGTGACTACATCTATCCAAA 1064
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1033 TCATGGAAAGACCGCCAGAGGGAAAAACTACTACAAAGAAGGTGACTACATCTACCCGAA 1092
Query 1065 ATTTGATGCTACTGAAGCATACAGAAGGTCGTTGAAGACTTGGGCAAAATGGATCGATGA 1124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1093 ATTTGATGCTACTGAAGCATACAGAAGGTCGTTGAAGACTTGGGCAAAATGGATCGATCA 1152
Query 1125 AAATGTGAATCCCAAAAAGCAGCTTATATTTTATCGCGGATACTCCTCTGCCCATTTTCG 1184
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1153 GAATGTGAATCCCAAAAAGCAGCTTGTATTTTATCGCGGATACTCCTCTGCCCATTTTCG 1212
Query 1185 GGGAGGTGAGTGGGACTCTGGAGGGTCATGCAACGGAGAGGTAGAACCGGTAAAGAAAGG 1244
|||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 1213 GGGAGGTGAGTGGGACTCGGGAGGGTCATGCAACGGGGAGGTAGAACCTGTGAAGAAGGG 1272
Query 1245 TTCAATCATTGATTCCTATCCTTTGAAAATGAAGATAGTCGAGGAAGCCATCAAGGAGAT 1304
||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1273 TTCAATCATCGATTCCTATCCTTTGAAAATGAAGATAGTCCAGGAAGCCATAAAGGAGAT 1332
Query 1305 GCAAGTTCATGTGATTCTTCTAAACGTGACAAAGCTGACTAATTTCCGCAAAGACGGGCA 1364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1333 GCAAGTTCCTGTGATTCTTCTAAACGTGACAAAGCTGACTAATTTCCGCAAAGACGGACA 1392
Query 1365 TCCATCAATCTACGGTAAGACCAATACGGATGGTAAAAAAGTGTCGACAAGGCGACAGGA 1424
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1393 TCCATCAATCTACGGTAAGACCAACACGGATGGTAAGAAAGTGTCGACAAGGCGACAGGA 1452
Query 1425 TTGCAGCCACTGGTGCCTGCCGGGAGTTCCCGATGTTTGGAACCATCTTATCTACGCATC 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TTGCAGCCACTGGTGCCTGCCGGGAGTTCCCGATGTTTGGAACCATCTTATCTACGCATC 1512
Query 1485 TTTGCTCCTTCAACCACATTCCTAAATTTGAGCACATACATCAACAAAATTAGATAGTAA 1544
||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||
Sbjct 1513 TTTGCTCCTTCAACCACATTCTTAAAGTTGAGCTCATACATCAACAAAATTAGATAGAAA 1572
Query 1545 GAGAAGAGCAGAAACAAATGACCAATCCAGTCTTCACTGTTGTAGTAGTGATGTCAAATT 1604
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1573 GAGAAGAGCAGAAACAAATGACCAGTCCAGTCTTCACTGTTGTAGTAGTGATGTCAAATT 1632
Query 1605 TTGTGTAATTTATTG 1619
|||||||||||||||
Sbjct 1633 TTGTGTAATTTATTG 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5