BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488969
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20640.1 | Symbols: | Protein of unknown function (DUF567) ... 1077 0.0
> AT5G20640.1 | Symbols: | Protein of unknown function (DUF567)
| chr5:6984240-6985365 FORWARD LENGTH=947
Length=947
Score = 1077 bits (583), Expect = 0.0
Identities = 753/830 (91%), Gaps = 31/830 (4%)
Strand=Plus/Plus
Query 1 TATATATAAGGATTAAGAGCTCGTCAGGCACGAGTGTGTATAGATGTGATGGGTGCGAGA 60
||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 95 TATATATAAGGATTAAGAG---GTCAGGCACGAGTGTGTATAGACGTCATGGGTGCGAGA 151
Query 61 AGCAGCCAGACTGTGGATCCGGGGGTGAGCCAGG-GATACTCATCGGAATCAGAGACGGT 119
|||||||||||||||||||| | | |||||| || |||||||||||||||||||||| ||
Sbjct 152 AGCAGCCAGACTGTGGATCCAGTGTTGAGCC-GGAGATACTCATCGGAATCAGAGACAGT 210
Query 120 GCTGGTGGTGCGGCGACGACCGCATATGGTGAACGGAGGAGGATTCGTAGTGAGCAATAG 179
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 211 ACTAGTGGTGCGACGACGACCGCCTATGGTGAACGGAGGAGGATTCGTAGTGAGCAATAG 270
Query 180 CAAACAACAAGAAGTGTTTAGAGTTCATGGATGTGGAGTTCTTGGAAGC-AAAGGCAAGC 238
||||||| || ||| ||||||||| |||| |||||||||||||||| | |||||||| |
Sbjct 271 CAAACAAGTAGTAGTATTTAGAGTTGATGGGTGTGGAGTTCTTGGAA-CTAAAGGCAAAC 329
Query 239 TTCTATTGAGAAATGGTGATGGTAATGATTTGCTTCTCATCCGCAAAATGGGAGGAATAG 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TTCTCTTGAGAAATGGTGATGGTAATGATTTGCTTCTCATCCGCAAAATGGGAGGAATAG 389
Query 299 TGCAGGCACTGAACATGGTACACAAGAAATGGGAAGGTTTTGGATATGACAATGAAGGAG 358
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 390 TGCAGGCACTGAACATGGTACACAACAAATGGGAAGGTTTTGGCTATGACAATGAAGGAA 449
Query 359 CAGAGAGGTTAGTTTTCACCTTGAAAGATCCGAAAGATTCATGTCTGGTTCAAAACAGTT 418
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 450 CAGAGAGGTTAGTTTTCACCTTGAAAGATCCAAAAGATTCATGTCTTGTTCAAAACAGTT 509
Query 419 CAATCAAAATCTTAGTTCACGGTAAACCGCTGAAGATATCATCAACTCGCAACAACTATG 478
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 510 CAATCAAAATCTTAGTTCACGGTAAACCCCCGAAGATATCATCAACTCGCAACAACTACG 569
Query 479 TAGAGATCACAGGCTCTTTCGCAGAGAGAGCTTGTAACATCATAAATTCAGAAGGCAGAA 538
||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||| ||
Sbjct 570 TAGAGATCAAAGGCTCTTTTGCAGAGAGAGCTTGTAACATCATGGATTCAGATGGCA-AA 628
Query 539 -CCATAGCTAAGGTGAGAATAGAGAAAGAGATAGAGGAAATGGTGGGGAACAAGAAGGAT 597
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 629 GCCATAGCTAAGGTGAGAATAGAGAAAGAGATGGAGGAAATGGTGGGGAATAAGAAGGAT 688
Query 598 TTGTATCATGTAATTGTCAAACCAAATGTGGACCAAGCTTTCATCGTCGGTCTCATCGCT 657
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 689 CTGTATCATGTAATTGTCAAACCAAATGTGGACCAATCTTTCATCGTCGGTCTCATTGCT 748
Query 658 ATTCTCGACTATATTCATGGCGAATCTACCATCTGCTAAATCTATTTATCACTCTATCTA 717
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 749 ATACTCGACTATATTCATGGCGAATCTACCATCTGCTAGATCTACTTATC--TCTATCTA 806
Query 718 TGTCAC--A--G--A-A-CAT-AA-C-AT-----GTAACAATGGACCTTGCAAGTGTTGA 761
|||||| | | | | ||| || | || |||||||||||| |||||||||||||
Sbjct 807 TGTCACTGAATGTGATAACATTAAACCATACCATGTAACAATGGACATTGCAAGTGTTGA 866
Query 762 G-TTTTTGCTTGTAGATGAGGAATTTATATGGCTCAATCATAAGAACTCA 810
||||||||||||| ||| ||||| | |||| ||||||||||| |||
Sbjct 867 AATTTTTGCTTGTAGCTGAAGAATTC-T--GGCTAAATCATAAGAATTCA 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5