BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488972
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20670.1 | Symbols: | Protein of unknown function (DUF1677)... 896 0.0
> AT5G20670.1 | Symbols: | Protein of unknown function (DUF1677)
| chr5:6993114-6993873 REVERSE LENGTH=760
Length=760
Score = 896 bits (485), Expect = 0.0
Identities = 588/634 (93%), Gaps = 22/634 (3%)
Strand=Plus/Plus
Query 1 AACCTTAAAGCCAGAGA--CGTAACAGAGAATTTTATTAGTCTCTCAATCTCATTTTCCA 58
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 10 AACCTTAAAGCCAGAGACTCGTAACAGAAAATTTTATTAGTCTCTCAATCTCATTTTCCA 69
Query 59 CAAAACAAatcatgtcatcatcatcatcatcatcaGCCACCGATATTAACGCAAAGCCGT 118
||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |
Sbjct 70 CAAAACAAATCATGTCATCATCATCATCATCGTCAGCCACCGATACTAACACAAAGCCAT 129
Query 119 CGTCGTCGTTGCCGGCGGTGGAGTCTGTCACGTGCGACACGTGCGGTTTCGCTGAAGAGT 178
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CGTCTTCGTTGCCGGCGGTGGAGTCTGTCACGTGCGACACGTGCGGTTTCGCTGAAGAGT 189
Query 179 GTACGCCGGCTTACATCAACCGTGTCAAAGAACGGCACAAGGGACACTGGCTTTGTGGGC 238
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 190 GTACGCCAGCTTACATCAACCGTGTCAAAGAACGGCATAAGGGACACTGGCTTTGTGGGC 249
Query 239 TTTGCGCGGAGGCGGTAAAAGACGAGGTGGTTCGATCTTCGACTCGTATCTCCGTCGAGG 298
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 250 TTTGTGCGGAAGCGGTAAAAGACGAGGTGGTTCGATCTTCCACTCGTATCTCCGTCGAGG 309
Query 299 AAGCTCTCCGTCGTCACACGACGTTTTGCCACCGTTTCCGTTCTTGGAG-CCCTGACGAG 357
| |||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 310 AGGCTCTCCGCCGTCACACGACGTTTTGCCACCGTTTCCGTTCTTGGAGTCCC-GATGAA 368
Query 358 GAGGAAGATCCGATATCCGTCATTGGTAGGATTCTACGGCGGAGCCTCGACGGCTCTCCA 417
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 369 GAGGAAGATCCGATATCCGTCATTGGTAGGATTCTACGGCGGAGTCTTGATGGCTCTCCA 428
Query 418 CGGAGAACCACTACGAGGACAAGCTCGAGCGGAGCTTTGCCGGGGATCGACGGTGTAGAG 477
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 429 CGGAGAACCAATACGAGGACAAGCTCGAGTGGAGCTTTGCCGGGGATCGACGGCGTAGAG 488
Query 478 TCACGACGGTCGCTTCTCCGATCTGGGAGTTGTTTCCCGTCTCTCTCTGCTTGat---t- 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 489 TCACGACGGTCGCTTCTCCGATCTGGGAGTTGTTTCCCGTCTCTCTCTGCTTGATCAATA 548
Query 534 -t-t-gt-a--------aa-tttgttttatatttttttg-tttaagattatttgcatcat 579
| | || | || |||||||| || ||||||| ||||||||||||||||||||
Sbjct 549 ATCTTGTTAGTTTTTGTAAATTTGTTTTTTACTTTTTTGGTTTAAGATTATTTGCATCAT 608
Query 580 tttaGAAGGAGAAGAAAGAGTTGGAATCCGAGGA 613
||||||||| ||||||||||||||||||||||||
Sbjct 609 TTTAGAAGGTGAAGAAAGAGTTGGAATCCGAGGA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5