BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488975
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20690.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2833 0.0
AT3G42880.1 | Symbols: | Leucine-rich repeat protein kinase fa... 798 0.0
> AT5G20690.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:7002453-7004551 FORWARD LENGTH=1980
Length=1980
Score = 2833 bits (1534), Expect = 0.0
Identities = 1824/1962 (93%), Gaps = 28/1962 (1%)
Strand=Plus/Plus
Query 12 TCCCGGTTTCTTCCTCCTCATCCTCCTCTTCTGTTTTTCAATCTCCCCTTCTTTGCAGCA 71
|||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||| |
Sbjct 21 TCCCGGTTTCTTTCTCCTCATCCTCCTCTTATCTTTCTCAATCTCCCCTTCTTTGCAGTA 80
Query 72 CGTGAGCGAGTCCGAACCGCTTGTGCGCTTCAAGAGCTCGGTGAATATAACCAAAGGGGA 131
|||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||
Sbjct 81 TGTGAGCGAGTCCGAACCGCTTGTGCGGTTCAAAAACTCGGTGAAGATAACCAAAGGGGA 140
Query 132 CCTAAATTCATGGAGATTAGGAACAGATCCTTGCAGTGGGAAATGGTTCGGGATCTATTG 191
|||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 141 CCTAAATTCATGGAGAGAAGGGACAGATCCTTGCAGTGGGAAATGGTTTGGGATCTATTG 200
Query 192 CCAAAAGGGTCTAACAGTCTCAGGCATTCACGTCACACGGCTTGGTCTCTCAGGAACCAT 251
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 201 CCAAAAGGGTCTAACAGTCTCAGGCATTCACGTCACACGTCTAGGTCTCTCAGGAACCAT 260
Query 252 CACCGTCGATGATTTAAAGGATCTCCCAAATCTTAAGACGATCAGGCTTGACAACAATCT 311
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 261 CACCGTGGATGATTTAAAGGATCTCCCAAATCTAAAGACGATCAGGCTTGACAACAACCT 320
Query 312 CCTCTCTGGTCCTCTCCCGCATTTCTTCAAACTCCGAGGCCTAAAGTCTCTCATGCTCTC 371
|||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 321 CCTCTCCGGTCCTCTCCCGCATTTCTTTAAACTCCGTGGCCTAAAATCTCTCATGCTCTC 380
Query 372 TAACAACAGCTTCTCCGGCGAGATCCGTGACGATTTTTTCAAGGACATGTCAAAGCTCAA 431
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TAACAACAGCTTCTCCGGAGAGATCCGTGACGATTTTTTCAAGGACATGTCAAAGCTCAA 440
Query 432 GCGACTATTTCTTGATCATAACAAATTCCAGGGAAATATCCCTTCCTCCATTACACAGCT 491
|||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||
Sbjct 441 GCGACTATTTCTTGATCATAACAAGTTCGAGGGAAGTATCCCTTCCTCCATTACGCAGCT 500
Query 492 CCCTCAACTCGAGGAGCTTCACCTTCAAAGTAATAACTTCACCGGAGAGATACCTCCAGA 551
|||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 501 CCCTCAACTCGAGGAGCTTCACATGCAAAGTAATAACCTCACCGGAGAGATACCTCCAGA 560
Query 552 GATCGGCAACATTAAGAACCTTAAAGTCCTCGACCTCTCAACCAACCA-ACTCGAAGGAA 610
| | |||| ||| |||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 561 GTTTGGCAGCATGAAGAACCTTAAAGTCCTCGACCTCTCAACCAA-CAGCCTCGATGGAA 619
Query 611 CCGTCCCGGAAAGCATCGCCGATAGGAAAAATCTCGTTGCGAATTTGACAGAAAACGAAT 670
||||||| ||||||| || |||| ||||||||||| || ||||||||||| |||||||
Sbjct 620 TCGTCCCGCAAAGCATTGCGGATAAGAAAAATCTCGCTGTTAATTTGACAGAGAACGAAT 679
Query 671 ACTTGTGCGGGGCGTTGATAGACGTTGAATGTGAGGATATTAACCTAAGCGA--AG-GGG 727
||||||||||| || || | ||||||| ||||||| ||||| | |||| ||| | |
Sbjct 680 ACTTGTGCGGGCCGGTGGTGGACGTTGGATGTGAGAATATTGAGCTAAACGATCCGCAAG 739
Query 728 AAGGAC-ATAACCG--GAAAGCA-CCAACCTCGGTACCACAAACCTCGAACACGGCCACG 783
|||||| | ||| |||| || || ||||||||||| |||||||||||| |||| |
Sbjct 740 AAGGACAACCCCCGTCGAAACCATCC-TCCTCGGTACCAGAAACCTCGAACAAGGCCGCA 798
Query 784 GTACACGCAATCTTGGTGTCGATCTCGCTTCTTCTCATGTTCTTTATTATTGTGGGAATT 843
|| |||||||| |||||||||| |||||||||||| |||||||||||||||| || ||
Sbjct 799 ATAAACGCAATCATGGTGTCGATATCGCTTCTTCTCCTGTTCTTTATTATTGTTGGCGTT 858
Query 844 ATAAGGAAGCGAAATAAGAAGAAGAACCCTGACTTTCGAATGCTCGACAACCAA-CG-CA 901
|||| || |||||||||||||||||||||||||||| ||||||||| ||| ||| || |
Sbjct 859 ATAAAGAGGCGAAATAAGAAGAAGAACCCTGACTTTAGAATGCTCGCCAA-CAACCGTGA 917
Query 902 ACAACGATGCTGTGGAAGTCAGGATATCCGAATCTTCATCCACGACCGCGAAAAGATCTA 961
| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 918 A-AACGATGTTGTGGAAGTCAGGATATCCGAGTCTTCATCCACGACCGCCAAAAGGTCTA 976
Query 962 CAGATTCAAGCAGGAAGCGCGGTGGGCA-TGCGGATGGCGGTTCCTCCAAGAAAGGCT-T 1019
|||||||||||||||||||||||||||| | |||||| ||||||| |||||||||| | |
Sbjct 977 CAGATTCAAGCAGGAAGCGCGGTGGGCACT-CGGATGACGGTTCCACCAAGAAAGG-TGT 1034
Query 1020 GTCGAATATTGGTAAAGGTGGTAAC------GGAGGAGGAGCTCTAGGCGGCGGGATGGG 1073
||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1035 GTCGAATATTGGTAAAGGTGGTAACGGAGGAGGAGGAGGAGCTCTAGGCGGTGGTATGGG 1094
Query 1074 TGACATTATAATGGTGAATACGGA-AAAGGGTTCCTTTGGTTTACCCGATCTGATGAAGG 1132
||||||||| ||||||||||| || ||| |||||||| ||||||||||||||||||||||
Sbjct 1095 TGACATTATTATGGTGAATACCGACAAA-GGTTCCTTCGGTTTACCCGATCTGATGAAGG 1153
Query 1133 CTGCAGCCGAGGTGCTTGGCAACGGTAGCCTTGGATCAGCTTACAAGGCGGTGATGACCA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CTGCAGCCGAGGTGCTTGGCAACGGTAGCCTTGGATCAGCTTACAAGGCGGTGATGACCA 1213
Query 1193 CTGGATTATCCGTTGTGGTGAAGAGGATTAGGGATATGAATCAACTTGCACGCGAACCTT 1252
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1214 CTGGATTATCCGTTGTGGTGAAAAGGATTAGGGATATGAATCAACTTGCACGTGAACCTT 1273
Query 1253 TCGATGTCGAGATGAGACGATTCGGGAAACTCCACCACCCTAACATTCTT-ACCCCTTTA 1311
||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||
Sbjct 1274 TCGATGTCGAGATGAGACGATTCGGGAAACTCCGCCACCCTAACATT-TTGACCCCTTTA 1332
Query 1312 GCCTATCACTACCGCCGCGAAGAGAAGCTTGTAGTCTCCGAATACATGCCTAAAAGCAGC 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCCTATCACTACCGCCGCGAAGAGAAGCTTGTAGTCTCCGAATACATGCCTAAAAGCAGC 1392
Query 1372 TTGCTTTACGTTTTACATGGTGATCGTGGGATATATCATTCCGAGCTAACTTGGGCAACA 1431
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1393 TTGCTTTACGTTTTACATGGAGATCGTGGGATATACCATTCCGAGCTAACTTGGGCAACA 1452
Query 1432 AGATTGAAGATCATCCAAGGAGTGGCTCACGGAATGAAGTTCTTGCACGGGGAGTTTGCG 1491
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1453 AGATTGAAGATCATCCAAGGAGTGGCTCACGGAATGAAGTTCTTGCACGAGGAGTTTGCG 1512
Query 1492 TCCTACGATCTCCCACACGGTAACCTCAAATCCAGCAACGTTCTCCTCAGCGAGACCTAT 1551
|| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1513 TCTTATGATCTACCACACGGTAACCTCAAATCCAGCAATGTTCTCCTCAGCGAGACCTAC 1572
Query 1552 GAGCCTTTGATCAGCGATTACGCGTTCTTACCGCTTCTCCAACCAAGCAACGCATCGCAA 1611
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1573 GAGCCTTTGATCAGTGATTACGCATTCTTACCGCTTCTCCAACCAAGCAACGCATCGCAA 1632
Query 1612 GCATTGTTTGCTTTCAAGACGCCCGAGTTCGCGCAGACACAACAGGTCTCTCATAAATCA 1671
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1633 GCATTGTTTGCTTTCAAGACTCCCGAGTTCGCGCAGACACAACAGGTCTCGCATAAATCA 1692
Query 1672 GACGTCTACTGCCTCGGAATTATAATTCTAGAGATCTTGACGGGGAAATTCCCTTCTCAA 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 GACGTCTACTGCCTCGGAATTATAATTCTAGAGATCTTGACGGGGAAATTCCCTTCTCAA 1752
Query 1732 TACTTAAACAACGGTAAAGGCGGGACTGATATAGTTCAATGGGTACAATCTTCGGTTTCG 1791
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 1753 TACTTAAACAACGGTAAAGGCGGGACGGATATAGTACAATGGGTACAATCTTCGGTTGCG 1812
Query 1792 GAGCAAAAAGAAGAAGAACTTATCGATCCGGAGATAGTAAACAATACTGAATCAATGCGA 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 GAGCAAAAAGAAGAAGAACTTATCGATCCGGAGATAGTAAACAATACTGAATCAATGCGA 1872
Query 1852 CAGATGGTGGAATTGTTGCGGGTTGGGGCTGCTTGTATCGCAAGTAATCCAGATGAGAGA 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 CAGATGGTGGAATTGTTGCGGGTTGGGGCTGCTTGTATCGCAAGTAATCCAGATGAGAGA 1932
Query 1912 TTAGACATGAGGGAAACTGTTAGAAGGATAGAACAAGTAAAA 1953
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1933 TTAGACATGAGGGAAGCTGTTAGAAGGATAGAACAAGTAAAA 1974
> AT3G42880.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:14954587-14956577 FORWARD LENGTH=1902
Length=1902
Score = 798 bits (432), Expect = 0.0
Identities = 803/978 (82%), Gaps = 42/978 (4%)
Strand=Plus/Plus
Query 1000 GGTTCCTCCAAGAAAGGCTT-GTCGAATATTGGTAAAGGTGGTAACGGAGGAGGAGCTCT 1058
|||||||| |||||||| || ||| ||| || |||||| | | |||||| | ||
Sbjct 949 GGTTCCTCAAAGAAAGG-TTCATCGCATAACGGAAAAGGT-G---C--AGGAGGTGGTCC 1001
Query 1059 AGGCGGCGGGATGGGTGACATTATAATGGTGAATAC-G-GA-AAAGGGTTCCTTTGGTTT 1115
||| |||| ||||| |||||||||||||| || || | || ||| || |||||||||||
Sbjct 1002 AGGAAGCGGAATGGGAGACATTATAATGGT-AA-ACAGCGAGAAA-GGCTCCTTTGGTTT 1058
Query 1116 ACCCGATCTGATGAAGGCTGCAGCCGAGGTGCTTGGCAACGGTAGCCTTGGATCAGCTTA 1175
||| ||||| |||||||||||||| |||||||| ||||| |||||||||||||| || ||
Sbjct 1059 ACCTGATCTCATGAAGGCTGCAGCTGAGGTGCTAGGCAATGGTAGCCTTGGATCGGCCTA 1118
Query 1176 CAAGGCGGTGATGACC-ACTGGATTATCCGTTGTGGTGAAGAGGATTAGGGATATGAATC 1234
||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||| |
Sbjct 1119 CAAGGCGGTGATGGCCAAC-GGATTATCCGTGGTTGTGAAAAGGATTAGGGATATGAA-C 1176
Query 1235 -AACTTGCACGCGAACCTTTCGATGTC-GAGATG-AGACGATTCGGGAAACTCC-ACCAC 1290
|||||||||| ||| | |||||| | |||||| | ||| ||||| ||||||| | |||
Sbjct 1177 AAACTTGCACGTGAAGCATTCGAT-ACTGAGATGCA-ACGGTTCGGAAAACTCCGA-CAC 1233
Query 1291 CCTAACATTCTTACCCCTTTAGCCTATCACTACCGCCGCGAAGAGAAGCTTGTAGTCTCC 1350
|||||| |||||||||||||||| |||||||| || || |||||||||||||| |||||
Sbjct 1234 CCTAACGTTCTTACCCCTTTAGCTTATCACTATCGTCGAGAAGAGAAGCTTGTTGTCTCT 1293
Query 1351 GAATACATGCCTAAAAGCAGCT-TGCTTTACGTTTTACATGGTGATCGTGGGATATATCA 1409
|||||||||||||||||||| | | || |||||||| || || ||||||||| | |||||
Sbjct 1294 GAATACATGCCTAAAAGCAG-TCTACTCTACGTTTTGCACGGAGATCGTGGGGTTTATCA 1352
Query 1410 TTCCGAGCTAACTTGGGCAACAAGATTGAAGATCATCCAAGGAGTGGCTC-ACGGAATGA 1468
||| |||||||||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 1353 TTCGGAGCTAACTTGGGCAACAAGATTGAAGATCATACAAGGAGTGGCACGA-GGAATGG 1411
Query 1469 AGTTCTTGCACGGGGAGTTTGCGTCCTACGATCTCCCACACGGTAACCTCAAATCCAGCA 1528
| |||||||| | ||||||||||||||||||||| ||||| || || |||||||| ||||
Sbjct 1412 ACTTCTTGCATGAGGAGTTTGCGTCCTACGATCTTCCACATGGAAATCTCAAATCTAGCA 1471
Query 1529 ACGTTCTCCTCAGCGAGACCTATGAGCCTTTGATCAGCGATTACGCGTTCTTACCGCTTC 1588
||||||| || || || ||||||||||| ||||| ||||||||||||||| | |||||||
Sbjct 1472 ACGTTCTACTAAGTGAAACCTATGAGCCATTGATTAGCGATTACGCGTTCCTCCCGCTTC 1531
Query 1589 TCCAACC-AAGCAACGCATCGCAAGCATTGTTTGCTTTCAAGA-CGCCCGAGTTCGCGCA 1646
| || || || |||||| || ||||| || || || ||||| | | |||||||| | ||
Sbjct 1532 TTCAGCCTAA-CAACGCCTCACAAGCTTTATTCGCGTTCAA-ATCCCCCGAGTTTGTACA 1589
Query 1647 GACACAA-CAGGTCTCTC-ATAAATCAGACGTCTACTGCCTCGGAATTATAATTCTAGAG 1704
| || | ||||| || | | |||||||||||||| ||||| ||||| || |||| |||
Sbjct 1590 AA-ACCAGCAGGTTTCACCA-AAATCAGACGTCTATTGCCTTGGAATAATCGTTCTCGAG 1647
Query 1705 ATCTTGACGGGGAAATTCCCTTCTCAATACTTAAACAAC-GGTAAAGGCGGGACTGATAT 1763
|| |||||||||| ||||| ||||| ||| |||| | | |||||||| ||||| |||||
Sbjct 1648 GTCATGACGGGGAAGTTCCCGTCTCAGTACCTAAATA-CTGGTAAAGGAGGGACGGATAT 1706
Query 1764 AGTTC-AATGGGTACAATCTTCGGTTTCGGAGCAAAAAGAAGAAGAACTTATCGATCCGG 1822
||| | ||||||| |||||||| | | | || ||||||||||| ||||| ||||| |
Sbjct 1707 AGT-CGAATGGGTGCAATCTTCAATCGCACAACATAAAGAAGAAGAGCTTATAGATCCCG 1765
Query 1823 AGATAGTAAACAATACTGAATCAATGCGACAGATGGTGGAATTGTTGCGGGTTGGGGCTG 1882
|||| | | |||||||| || || ||| ||||| |||||||||||| | |||||||
Sbjct 1766 AGATTGCGAGTAATACTGATTCGATAAAACAAATGGTTGAATTGTTGCGGATCGGGGCTG 1825
Query 1883 CTTGTATCGCAAGTAATCC-AGATGAGAGATTAGACATGAGGGAAACTGTTAGAAGGATA 1941
|||||||||||||||| || | | |||||| | |||||| ||| | |||||||||||||
Sbjct 1826 CTTGTATCGCAAGTAACCCTA-ACGAGAGACAAAACATGAAGGAGATTGTTAGAAGGATA 1884
Query 1942 GAACAAGTAAAAGTTTGA 1959
|||| ||||| | |||||
Sbjct 1885 GAACGAGTAACACTTTGA 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5