BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488978
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20720.1 | Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | ... 1483 0.0
> AT5G20720.1 | Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21
| chaperonin 20 | chr5:7014669-7016481 FORWARD LENGTH=975
Length=975
Score = 1483 bits (803), Expect = 0.0
Identities = 899/942 (95%), Gaps = 19/942 (2%)
Strand=Plus/Plus
Query 2 TCTATCTCTCTCTCTACTGCAGTTTTTAGGGTTTTATCCTCCGAAAG------------- 48
|||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 7 TCTAACTCTCTCTCTACTGCAATTTTTAGGGTTTTATCCTCCGAAAGTCTCAACCTTTTT 66
Query 49 --TATCCTCAGC-A--AGAAATGGCGGCGACTCAACTTACAGCATCACCAGTGACTATGT 103
|||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 67 CTTATCCTCAACAAGGAGAAATGGCGGCGACTCAACTTACAGCGTCACCAGTGACTATGT 126
Query 104 CAGCAAGGAGCTTAGCCTCGCTGGATGGTCTAAGAGCTTCAAGTGTCAAGTTTTCATCTT 163
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 127 CAGCAAGGAGCTTAGCCTCGCTGGATGGTCTCAGAGCTTCGAGTGTCAAGTTTTCATCTT 186
Query 164 TGAAACCAGGGACCCTTAGGCAGAGCCAGTTCCGTCGTTTGGTTGTCAAAGCTGCTTCTG 223
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TGAAACCAGGGACCCTTAGACAGAGCCAGTTCCGTCGTTTGGTTGTCAAAGCTGCTTCTG 246
Query 224 TTGTTGCCCCTAAGTATACTTCAATTAAGCCATTGGGAGATCGAGTTTTGGTGAAGATCA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TTGTTGCCCCTAAGTATACTTCAATTAAGCCATTGGGAGATCGAGTTTTGGTGAAGATCA 306
Query 284 AGGAGGCAGAGGAAAAGACTTTAGGAGGTATCTTACTACCATCCACTGCTCAATCAAAAC 343
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 307 AGGAGGCAGAGGAGAAGACTTTAGGTGGTATCTTACTTCCATCCACTGCTCAATCAAAAC 366
Query 344 CTCAAGGAGGTGAAGTCGTTGCTGTGGGTGAAGGAAGAACAATTGGGAAGAACAAAATCG 403
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 367 CTCAAGGAGGTGAAGTCGTTGCCGTGGGTGAAGGAAGAACTATTGGGAAGAACAAAATTG 426
Query 404 ATATCACTGTCCCTACTGGAGCACAAATTATTTACTCCAAATACGCAGGAACTGAGGTGG 463
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 427 ATATCACTGTCCCTACTGGAGCACAAATTATCTACTCCAAATACGCAGGAACTGAGGTGG 486
Query 464 AGTTCAATGATGTGAAGCATCTCATTCTCAAGGAAGATGATATTGTTGGCATTCTTGAGA 523
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 487 AGTTCAATGATGTGAAGCATCTTATCCTCAAGGAAGATGATATTGTTGGCATTCTTGAGA 546
Query 524 CAGAGGACATCAAAGATCTCAAACCTTTGAATGACCGAGTCTTTATTAAGGTTGCTGAGG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CAGAGGACATCAAAGATCTCAAACCTTTGAATGACCGAGTCTTTATTAAGGTTGCTGAGG 606
Query 584 CAGAGGAGAAAACAGCTGGAGGGTTGTTGTTAACCGAGACTACTAAAGAAAAGCCTTCTA 643
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 607 CGGAGGAGAAAACAGCTGGAGGGTTGTTGTTAACCGAGACTACCAAAGAGAAGCCTTCTA 666
Query 644 TTGGCACGGTGATAGCAGTTGGACCGGGTTCCCTAGACGAGGAAGGTAAAATTACTCCTC 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 667 TTGGCACGGTGATAGCAGTTGGACCGGGTTCCCTAGACGAGGAAGGTAAAATTACGCCTC 726
Query 704 TACCAGTATCGACCGGAAGCACAGTTCTTTACTCCAAGTATGCTGGTAACGACTTCAAGG 763
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 727 TACCAGTATCAACCGGAAGCACAGTACTTTACTCCAAGTATGCTGGTAACGACTTCAAGG 786
Query 764 GCAAAGATGGTTCCAACTACATTGCCCTCAGAGCTTCAGATGTGATGGCTATACTTTCTT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GCAAAGATGGTTCCAACTACATTGCCCTCAGAGCTTCAGATGTGATGGCTATACTTTCTT 846
Query 824 AGTTATGTCATATCTTTGTAATCTGCAACTTGTATCCCAATTGTGGAAATTTTTTC-GTA 882
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 847 AGTTATGTTATATCTTTGTAATCTGCAACTTGTATCCCAATTGTGGAAATTTTTTCCGTA 906
Query 883 AACGGCCTGAGCATAATCTGGAATAAAGACTTGAGTTGGAAA 924
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 907 AACGGCCTGAGCATAATCTGGAATAAAGACTTGAGTTTGAAA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5