BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488983
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20740.1 | Symbols: | Plant invertase/pectin methylesterase... 1053 0.0
> AT5G20740.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:7025686-7026532 REVERSE
LENGTH=847
Length=847
Score = 1053 bits (570), Expect = 0.0
Identities = 690/747 (92%), Gaps = 11/747 (1%)
Strand=Plus/Plus
Query 1 ACATAACCCTAATTTGGTCTCTCACTCTAAGCCGATAGAGAATGGCTCCT-CGACACAAG 59
|||||||||||||||||||||| ||||||| |||| ||| |||||||||| | ||| ||
Sbjct 8 ACATAACCCTAATTTGGTCTCTTACTCTAACCCGAGAGATAATGGCTCCTAC-ACAAAAT 66
Query 60 CTCTTCCTCCTCGCTATTGTCTTCGCCATCATTGTCACCGCCACCACCGTACACGGTCGT 119
|||||||| ||||||||| ||||||| ||||| |||||||| |||||||||| ||||||
Sbjct 67 CTCTTCCTTGTCGCTATTGCCTTCGCCGTCATTTTCACCGCCTCCACCGTACATGGTCGT 126
Query 120 CATAATGGTGCAAAAGATATCGTTCATTCCTCCTGCGAACACGCGAGCTACCCATCACTA 179
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 127 CATAATGGTGCAGAAGATATCGTGCATTCCTCCTGCGAACACGCGAGCTATCCATCACTA 186
Query 180 TGCGTCCGTACTCTTTCATCTTACTCCGGTCCAACCATCACCAACCGCCGTGACCTAGCT 239
||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 187 TGCGTCCGTACTCTTTCGTCATACTCCGGTCCAACCATCACCAACCGCCGCGATCTAGCT 246
Query 240 CAAGCCGCGGTCAAAATCAGCCTCTCCCACGCTCAAAGCGCCGCGAAGAAACTCACGGTG 299
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 247 CAAGCCGCCATAAAAATCAGCCTCTCCCACGCTCAAAGCGCCGCGAAGAAACTCGCGGTG 306
Query 300 GTGCGAGACTCGGTGGGGAAGAAGAGGCAAGAGAAAGCGGCGCTTGTGGACTGTGTGGAG 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 307 GTGCGAGACTCGGTGGGGAAGAAGAAGCAAGAGAAAGCGGCGCTTGTGGACTGTGTGGAG 366
Query 360 ATGATTGGAGACTCGGTGGACGATTTAAGCCGCACCCTCGGCGTTTTGAAGCACCTCCGT 419
|||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 367 ATGATTGGAGACTCTGTGGACGAGCTAAGCCGTACGCTCGGCGTTTTGAAGCACCTCCGT 426
Query 420 ATCTCTGGCGGTTC-GCCTAAAGAGTTCCGGTGGCAGATGAGCAATGCACAGACGTGGGC 478
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GTCTCTGGCGGTTCAG-CTAAAGAGTTCCGGTGGCAGATGAGCAATGCACAGACGTGGGC 485
Query 479 TAGCGCGGCGCTTACCGATGACGACACGTGTCTCGATGGGTTTGAAGAGAT---CGACGG 535
||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 486 TAGCGCGGCACTTACGGATGACGACACGTGTCTCGATGGGTTTCAAGGGATGGACGACGG 545
Query 536 TGATATCAAAACGGAGGTGAAACAGTGGATGACGAAGGTGGCCAGGGTTACGAGCAACGC 595
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 546 TGAAATCAAAACGGAGGTGAAGCAGTGGATGACGAAAGTGGCCAGGGTTACGAGCAACGC 605
Query 596 GCTTTACATGATCAACCAGCTAGATGAGACACGTGGCAAACCCCACGACGTACATCTTTG 655
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GCTTTACATGGTCAACCAGCTAGATGAGACACGTGGCAAACCCCACGACGTACATCTTTG 665
Query 656 ATGTTAATGCACTAGATCGTTT-AATGGACGGTCGTGGTTGTGTGT-T-GGtttttttAT 712
|||||||||||||||||||||| ||||||||||| | |||||||| | ||||||| |
Sbjct 666 ATGTTAATGCACTAGATCGTTTTAATGGACGGTCTTTATTGTGTGTGTTGGTTTTTCG-T 724
Query 713 TCGTGTGTTTTAATTGTGAGATTATCT 739
|| |||||||||| |||||||||||||
Sbjct 725 TCATGTGTTTTAAGTGTGAGATTATCT 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5