BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488984
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 761 0.0
AT3G43110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 163 2e-39
> AT5G20790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant
structures; EXPRESSED DURING: LP.04 four leaves visible, 4
anthesis, petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G43110.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:7039911-7040654 REVERSE LENGTH=744
Length=744
Score = 761 bits (412), Expect = 0.0
Identities = 632/728 (87%), Gaps = 55/728 (8%)
Strand=Plus/Plus
Query 1 ACATTTCAAGAAAGAGATCGATGTCGACATTGGAATCTCCATTGGAGGCGTTGGCTTTTG 60
||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 8 ACACTTCAATAAAGAGATCGATGTCGACTTTGGAATCTCCATTAGAGGCGTTGGCGTTTG 67
Query 61 AATACGCTAGCTTCGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AATACGCTAGCTTAGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 127
Query 121 TGACCGCCGCCGTCAGCTTCTGGAGGATCAGAGTCACCACCATCAG-AGTTGGAGACGGC 179
|||| ||||| |||||||||||||||||||||||||| ||||| || ||| |||||||||
Sbjct 128 TGACTGCCGCTGTCAGCTTCTGGAGGATCAGAGTCACAACCAT-AGGAGTCGGAGACGGC 186
Query 180 CATGCATGTGTCTTGGTAGAGGAATTAACCGGTTCTAAATCGGAAAACGAATCCGGTCGT 239
||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 187 CATGCATGTGTCTTGATAGAAGAATTAACCGGTTCTAAATCTGAAAACGAATCCGGTCGT 246
Query 240 CTCGAACCGAAATCAATAACCGGTCCGGTTAAAGAAACGG----A--A---A------CG 284
||||||||||||||||||||||||||||| |||||||||| | | | ||
Sbjct 247 CTCGAACCGAAATCAATAACCGGTCCGGTCAAAGAAACGGTTGCACGAGTGAAGGAAACG 306
Query 285 GTTACAAAAACGGAGCCGTTAATGTATGATGACGGAGTGACCAAAGGG-AAGCTGACGAT 343
||||| ||||||||||||||||| | |||||||||||||| |||||| |||||||||||
Sbjct 307 GTTACGAAAACGGAGCCGTTAATATGCGATGACGGAGTGAC-AAAGGGGAAGCTGACGAT 365
Query 344 GTACTATGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTATTGAGTCTGTTGACGGAGA 403
|| ||| ||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 366 GTGCTACGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTGTT-A--------ACGGAGA 416
Query 404 GTTAACGGCCGTTAGCTGCGGAGGAGGTTTGGGTAATTGTGGCGGTGAGTGGTGGGAGAA 463
|||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 417 TTTAACGGCAGTTAGCTACGGAGGAGGTTTGGGTAATTGTGGCGGGGATTGGTGGGAGAA 476
Query 464 ATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGTTACGTGGATTT 523
|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 477 ATGGGATGGAGTGGTGAGGATGAGAAATGGTGATGACAGTTGGTACCGTTACGTGGATTT 536
Query 524 AACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATGACACCCAGAG-CTAGTAACGGC 582
|||||||||||| |||||||| || |||||||||||||||| | | | |||||||||||
Sbjct 537 AACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATGACAACAAAACACTAGTAACGGC 596
Query 583 GGCAGGTGTCTAAATTAGAG---TTT--T-T-----AA--T--------CTTGAGAAACT 621
|||| ||||||||||||||| ||| | | || | |||||||| ||
Sbjct 597 GGCATGTGTCTAAATTAGAGAAGTTTCATATTTCGGAAAGTTTTTAAATCTTGAGAAGCT 656
Query 622 TTCTTGGTTTAAAGTGTATTTTTT--G--G-TTGATTAAGTTGTAATTTGTAAATAATTT 676
|||||||||| |||||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 657 TTCTTGGTTTGAAGTGTTTTTTTTTTGTTGGTTGATTAAGTTGTAATTTGTAAATAATTT 716
Query 677 TCACACAA 684
||||||||
Sbjct 717 TCACACAA 724
> AT3G43110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G20790.1); Has 30 Blast hits to
30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:15091611-15092467 REVERSE
LENGTH=857
Length=857
Score = 163 bits (88), Expect = 2e-39
Identities = 102/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 453 TGGTGGGAGAAATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGT 512
|||||||||| |||||| |||||||||| |||||||||||| ||||| |||||||| |||
Sbjct 591 TGGTGGGAGAGATGGGAGAGAGTGGTGAAGATGAGAAATGGAGATGAAGGTTGGTACCGT 650
Query 513 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATG 561
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 651 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATG 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5