BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488986
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20810.2 | Symbols: | SAUR-like auxin-responsive protein fa... 926 0.0
> AT5G20810.2 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:7043898-7045712 FORWARD LENGTH=1271
Length=1271
Score = 926 bits (501), Expect = 0.0
Identities = 612/665 (92%), Gaps = 10/665 (2%)
Strand=Plus/Plus
Query 95 TCCGAGAACAGaaaaaacc-taaaaaaaaGATCGAAGCGAATCAAAATCAAAGAAATCTT 153
||||||||||||| | || |||||||||||||||||||||||| || |||| |||| ||
Sbjct 156 TCCGAGAACAGAATTATCCTTAAAAAAAAGATCGAAGCGAATCATAA-CAAACAAATTTT 214
Query 154 CGGGAGCTCCttttttttt-tttttttttttttttCATGAT--ATA-CCGTAGAAAGCTT 209
|||| ||| ||||||||| | | || || || || | ||| | || ||||||
Sbjct 215 CGGGGGCT-ATTTTTTTTTGCATGGTGTTATTCATCGTG-TCCATAGCTAAAGCAAGCTT 272
Query 210 CAATTTCGTTTTCCTCTTCAGTTACAAAGGGAAGAAGAAGATCATATGTGACATTTGATC 269
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 273 CAA-TTCGTTTTCCTCTTCAGCTACAAAGGGAAGAAGAAGATCATATGTGACATTTGATC 331
Query 270 TTTCGTTTTTATTAGGCAGATGGATGAAAACAATGCGGCAAAGTTAACCGGCATCAGGCA 329
||||| || || ||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 332 TTTCG-TTATACTAGCCAGATGGATGAAAACAACGCGGCCAAGTTAACCGGTATCAGGCA 390
Query 330 GATTGTGAGGCTTAAGGAGATTTTGCAGAAATGGCAAACCGTCACCATAGGGCCCAAGTC 389
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 391 GATTGTCAGGCTTAAGGAGATTTTGCAGAAATGGCAAACCGTCACCATAGGCCCCAAGTC 450
Query 390 AGATGTTCCTCCATTGGCAGCTGGAAAGCAAGCGGTGGCCATGATTTCGCCCGCGATCAA 449
||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 451 AGAAGTTCCTCCATTGGCAGCTGGAAAGCAAGCAGTGGCGATGATTTCGCCCGCCATCAA 510
Query 450 CAAGAGGCTATTAGATGTCAAGAACGGTGACTCCGATGAGGAAAACTGCCAAAGCCCTGA 509
||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||
Sbjct 511 CAAGAGGCTATTAGATGTCAAGAACGGTGACTCGGATGAGGAAACCTGTCAAAGTCCTGA 570
Query 510 GCCGCCTCATGATGTTCCTAAAGGGTATCTTGCGGTTTATGTTGGACCGGAGCTAAGGAG 569
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 571 GCCGCCTCATGATGTTCCTAAAGGGAATCTTGCTGTTTATGTTGGACCGGAGCTAAGGAG 630
Query 570 GTTTATCATACCGACAAGCTATCTTAGCCACTCTCTGTTCAAGGTTTTGCTTGAGAAAGC 629
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 631 GTTTATCATACCGACAAGCTATCTTAGCCACTCTCTGTTCAAGGTTTTGCTCGAGAAAGC 690
Query 630 AGAGGAAGAGTTTGGGTTTGATCAGAGCGGCGCCCTCACCATCCCTTGCGAGGTCGAGAC 689
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 691 AGAGGAAGAGTTTGGGTTTGATCAGAGCGGTGCGCTCACCATCCCTTGCGAGGTCGAGAC 750
Query 690 TTTCAAGTACTTGCTTAAGTGCATGGAGAACAATCTTAAAGATCTTCATCCTGATGACAA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTTCAAGTACTTGCTTAAGTGCATGGAGAACAATCTTAAAGATCTTCATCCTGATGACAA 810
Query 750 CTCTG 754
|||||
Sbjct 811 CTCTG 815
Score = 274 bits (148), Expect = 1e-72
Identities = 175/187 (94%), Gaps = 5/187 (3%)
Strand=Plus/Plus
Query 754 GATGGGGATGCAGTAGCAGCAAAGGAAGAGTAAATACAAGTCAAGTGATAAAAACTCTTA 813
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1082 GATGGGGAGGCAGTAGCAGCAAAGGAAGAGTAAATACAAGTCAAGTGATAAAAAATCTTA 1141
Query 814 AAACATTTCTTTTGTTACAATGA-T-TCTTGTTATCCTTTAATCATATACTGATGGAAAT 871
|||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1142 AAACATTTATTTTGTT---TTGATTCTCTTGTTATCCTTTAATCATATACTGATGGAAAT 1198
Query 872 TGTCAATTAGGGATGTTTACCTTGGGGTGTAATTGTAAAATCAGATTATCTTTGTGTTTT 931
||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTTAATTAGGGATGATTACTTTGGGGTGTAATTGTAAAATCAGATTATCTTTGTGTTTT 1258
Query 932 CCTGGTT 938
|||||||
Sbjct 1259 CCTGGTT 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5