BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488987
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20820.1 | Symbols: | SAUR-like auxin-responsive protein fa... 785 0.0
> AT5G20820.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:7046751-7047396 REVERSE LENGTH=646
Length=646
Score = 785 bits (425), Expect = 0.0
Identities = 527/574 (92%), Gaps = 15/574 (3%)
Strand=Plus/Plus
Query 1 ctctctctctctcACCGGAAAACTTACTCGGACTTGCATCTCCGACGTCAAAATTCCT-C 59
|||||||||||||||||||||||| |||||||||| ||| |||||||||||| || || |
Sbjct 30 CTCTCTCTCTCTCACCGGAAAACTCACTCGGACTTACATTTCCGACGTCAAACTT-CTCC 88
Query 60 AAACGGAATCGGAAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 119
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 AAACCGAATCGGTAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 148
Query 120 AGAAACTCAATTCATTCAACACCAAGCCTAACCAACCACAAGCTCAAACCAATCACGGCC 179
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 149 AGAAACTCAATTCATTCAACACCAAGCCTAACCAGCCACCAGCTCAAACCAATCACAGCC 208
Query 180 GATCCTCCGCCGTGAGTGCATTTCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 239
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 209 GATCCTCCGCCGTGAGTGCGTTCCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 268
Query 240 CACGGAGGCCGTACCACGTGAGCTCTGACGTTGTGAGCCACCCGCTCTTCCAGCAGCTAG 299
|||||||| | |||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 269 CACGGAGGACATACCACGTGAGCTCCGATGTCGTGAGCCACCCGCTCTTCCAGCAGCTAG 328
Query 300 CGGCGGTGGATGGTGGATGTGGCAGCGAGGACGGTTCCATCTCCGTGTCATGTGAAGTTG 359
||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||
Sbjct 329 CGGCGGTGGATGGTGGATGCGGCAGCGAGGACGGTTCCATCTCTGTGTCGTGCGAAGTTG 388
Query 360 TCTTGTTTGAGCATTTGCTTTGGATGCTGGAGAACGCGGACGCTGACGAGTCACGCCCTG 419
|||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||| |
Sbjct 389 TCTTGTTTGAGCATTTGCTTTGGATGTTGGAGAACGCCGACGCCGATGAGTCACGCCCCG 448
Query 420 AGTCGGTCCACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 AGTCGGTCTACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 508
Query 480 CAAAATATATACA--ATGA--T-T-A-ATGTTTGTATATTCTATACTTT-TGTA-T--AC 528
|||||||||| | || | | | | |||||||||||||||| ||||| | || | ||
Sbjct 509 CAAAATATATTTATGATTAAATGTTACATGTTTGTATATTCTACACTTTGTATACTTTAC 568
Query 529 --TTTACATAGTCTTTCGTGAAATAATCTATTTT 560
|||||||||| |||||||||||||||||||||
Sbjct 569 ACTTTACATAGTATTTCGTGAAATAATCTATTTT 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26875268645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5