BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488994
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20885.1 | Symbols: | RING/U-box superfamily protein | chr5... 928 0.0
> AT5G20885.1 | Symbols: | RING/U-box superfamily protein | chr5:7083965-7084734
REVERSE LENGTH=770
Length=770
Score = 928 bits (502), Expect = 0.0
Identities = 676/753 (90%), Gaps = 39/753 (5%)
Strand=Plus/Plus
Query 1 tctctctctctctctctc-C-cacacacac--a--cac--acTTGAGCAAAATCATCACA 52
|||||||||||||||||| | ||||||||| | ||| ||||||||||| |||| |
Sbjct 12 TCTCTCTCTCTCTCTCTCACACACACACACAAACGCACATACTTGAGCAAAGTCAT--C- 68
Query 53 ACAATGAGCTTCTTCATCGAAGATTCTGGTCTCATAGTCACTCAACTTCTCTACAAAATG 112
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 69 ACAATGAGCTTCTTCATCGAAGATTCTGGTCTCATAGTCACTCAGCTTCTCTACAAAATG 128
Query 113 GCTGTTCTCATCACCATCTTGAGATGGATTCTCGCATGGATCTTACGCTACCGATCCAGA 172
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 129 GCTGTTCTCATCACCGTCTTGAGATGGATCCTCGCTTGGATCTTACGCTACCGATCCAGA 188
Query 173 TCCAGATCCACCTCATCTTCCTCCTCCCCTTCCGTTTCTCCTTCGATTTCGTCACAGACA 232
|||||||||| | | |||| || ||| |||||| | |||||||||||| |||||| |
Sbjct 189 TCCAGATCCA-C-C-TCTT-CT--TCCACTTCCGCCTGTCCTTCGATTTCCTCACAGGCG 242
Query 233 ATCAAGGAAAGCCTCTCCGTGACGACGTTCCGTGACGCGGCGGAGAGATCTCCGGCGATG 292
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 243 ATCAAAGAAAGCCTCTCCGTGACGACGTTCCGTGACGCAGCTGAGAGATCTCCGGCGATG 302
Query 293 ATCAACGACACCTGCGCGGTGTGTCTCGGAGATCTGGAAGATGGAGATGAGGTTAGAGAG 352
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ATCAACGACACCTGCGCTGTGTGTCTCGGAGATCTGGAAGATGGAGATGAGGTTAGAGAA 362
Query 353 CTCAGGAACTGTAGTCATATGTTTCACCGTGAGTGTATCGACCGGTGGTTGGATTACGAA 412
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 363 CTCAGGAACTGTAGCCATATGTTTCACCGTGAGTGTATTGACCGGTGGTTGGATTATGAA 422
Query 413 TGTTGCGGTGGAGATGATAATAACGAAGCTGAGGAGGATAACCACCGGACGTGTCCTCTT 472
||||||||||| ||||| |||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 423 TGTTGCGGTGGTGATGAGAATAACGAAGGTGAGGAGGATAATCACCGTACGTGTCCTCTT 482
Query 473 TGTAGAACTCCGCTACTTGCTGCTAATACGACGTCGTGTGGTGATTGGCCGGCGAAGAAC 532
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 483 TGTAGAACTCCGCTACTTGCTGCTAATACGACGTCGTGTGGTGATTGGCCGACGAAGAAC 542
Query 533 GAACCTAGCTGGGCCGTTGAACGGCTTCTCTACCTCTTCGGAGATGATCTTCACGTCTGA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GAACCTAGCTGGGCCGTTGAACGGCTTCTCTACCTCTTCGGAGATGATCTTCACGTCTGA 602
Query 593 TTG-attattc---gaatttt---attta-attttcaatttttatttaGT----T-G--- 636
|| ||| || | |||| |||| |||| | |||||||||||| | |
Sbjct 603 TTTCATTTTTTTTTGTCTTTTCCGATTTTTATTTG-ATTTTTTATTTAGTGGGATCGATT 661
Query 637 --GATCAAT-AGAAATT-ACGTAGTGAGAGTGGTTAATTTT-GTAAATTGGGGGATTTAA 691
||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 662 TTGATCAATTAGAAATTTAAGTAGTGAGAGTGGTTAATTTTTGTAAATTGGGGGATTTAA 721
Query 692 TGGGTTAGATTAGGAAGTATAATAATTATATCA 724
|| ||||||||||||| ||||||||| ||||||
Sbjct 722 TGTGTTAGATTAGGAAATATAATAATAATATCA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5