BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488997
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20910.1 | Symbols: AIP2 | RING/U-box superfamily protein | ... 1760 0.0
> AT5G20910.1 | Symbols: AIP2 | RING/U-box superfamily protein
| chr5:7092512-7094446 REVERSE LENGTH=1220
Length=1220
Score = 1760 bits (953), Expect = 0.0
Identities = 1054/1103 (96%), Gaps = 6/1103 (1%)
Strand=Plus/Plus
Query 1 GATCAAGAAAACTCGTCTCCTAGAAAAATCCCAGAAGACAAGAAATT-GTTCTTCATTTC 59
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||
Sbjct 1 GATCAAGAAAACTCGTCTCCTACAAAAATCCCAGAAGACAAGAGATTGGTTCTTCTTTTG 60
Query 60 CATCATTCTTACAAAATCCCC-AATTCTTTCGAAACCGCTGAGAATTCTCCTTAACTCTT 118
||||||||||||||||||||| || || ||||||||| ||||| |||||||||||||||
Sbjct 61 CATCATTCTTACAAAATCCCCAAAATCATTCGAAACCCCTGAGTATTCTCCTTAACTCTA 120
Query 119 AGAAAATAAAATTTTTAAATGGATACATCGTCTTCACCGTCTCCTTCCGAGGAAAGCTTG 178
|| |||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 AG-AAAT-AAATTTCTGAATGGATGCATCGTCTTCACCGTCTCCTTCCGAGGAAAGCTTG 178
Query 179 AAGCTTGAGCTGGATGATCTTCAGAAACAGCTGAACAAAAAGCTGAGATTCGAAGCATCC 238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGCTTGAGCTTGATGATCTTCAGAAACAGCTGAACAAAAAGCTGAGATTCGAAGCATCC 238
Query 239 GTTTCTTCTATTCATAATCTTCTCCGTGATCACTACTCTTCTTCCTCTCCTTCTCTTCGC 298
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 GTTTGTTCTATTCATAATCTTCTCCGTGATCACTACTCTTCTTCCTCTCCTTCTCTCCGC 298
Query 299 AAACAGTTCTATATTGTTGTATCTCGTGTCGCTACGGTTCTTAAGACAAGATATACAGCT 358
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAACAGTTCTATATAGTTGTATCTCGTGTCGCTACGGTTCTTAAGACAAGATATACAGCT 358
Query 359 ACTGGATTTTGGGTTGCTGGACTGAGTCTTTTCGAAGAGGCTGAGCGACTTGTTTCTGAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 ACTGGATTTTGGGTTGCTGGACTGAGTCTTTTCGAAGAGGCTGAGCGACTTGTCTCTGAT 418
Query 419 GCTTCTGAGAAGAAACATTTGAAATCTTGCATTGCTCAAGCTAAGGAACAGTTAAGCGAA 478
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 419 GCTTCTGAGAAGAAACATTTGAAATCTTGCGTTGCTCAAGCTAAGGAGCAGTTAAGCGAA 478
Query 479 GTAGATAATCAGCCGACAGAGAACTCACAAGGTTATCTTTTTGAGGGACAT-TTAACGGT 537
|||||||||||||| ||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 479 GTAGATAATCAGCCAACAGAGAGCTCACAAGGTTATCTTTTTGAGGGACATCTT-ACGGT 537
Query 538 TGATCGTGAGCCGCCACAGCCTCAGTGGCTAGTGCAGCAGAATCTCATGTCTGCTTTCGC 597
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 TGATCGTGAGCCGCCACAGCCTCAGTGGCTAGTACAGCAGAATCTCATGTCTGCTTTCGC 597
Query 598 TTCTATCGTTGCTGGTGAATCCTCTAATGGTCCTGCTGAAAACACTCTTGGGGAAACTGC 657
||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 598 TTCTATCGTTGGTGGTGAATCCTCTAATGGTCCTACTGAAAACACTATTGGGGAAACTGC 657
Query 658 CAACTTGATGCAAGAACTCATCAACGGTCTTGACATGATCATTCCAGAGATACTAGAAGA 717
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 658 TAACTTGATGCAAGAACTTATCAATGGTCTTGACATGATCATTCCAGATATACTAGATGA 717
Query 718 TGGGGGACCACCAAGAGCTCCACCGGCAAGTAAAGAAGTTGTCGAGAAACTCCCAGTCAT 777
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 718 TGGTGGACCACCAAGAGCTCCACCGGCAAGTAAAGAAGTTGTAGAGAAACTCCCAGTCAT 777
Query 778 CATTTTCAGCAAGGAATTGCTTAAAAAGTTCGGAGCAGAGGCAGAATGTTGCATCTGCAA 837
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 TATTTTCACCGAGGAATTGCTTAAAAAGTTTGGAGCAGAGGCAGAATGTTGCATCTGCAA 837
Query 838 GGAGAATCTGGTAATTGGCGACAAAATGCAGGAGTTGCCATGCAAGCACACATTTCACCC 897
||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 838 GGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCC 897
Query 898 TCCTTGCCTAAAGCCTTGGCTGGACGAGCATAACTCTTGCCCTATATGCCGCCATGAATT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCCTTGCCTAAAGCCTTGGCTGGACGAGCATAACTCTTGCCCTATATGCCGCCATGAATT 957
Query 958 ACCAACAGACGATCagaaatacgaaaactggaaagagagggagaaagaggccgaagaaga 1017
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 ACCAACAGACGATCAGAAATACGAAAACTGGAAAGAGAGAGAGAAAGAGGCCGAAGAAGA 1017
Query 1018 gaggaaaggcgcagagaaTGCTGTCCGCGGAGGTGAATATATGTACGTTTAAATTTTAAT 1077
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 GAGGAAGGGCGCAGAGAATGCTGTCCGCGGAGGTGAATATATGTACGTTTAAATTTCAAT 1077
Query 1078 CAGTTATGGCACACTCCCATTGT 1100
|||||||||||||||||||||||
Sbjct 1078 CAGTTATGGCACACTCCCATTGT 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5