BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489001
Length=2534
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20930.1 | Symbols: TSL | Protein kinase superfamily protein... 3845 0.0
> AT5G20930.1 | Symbols: TSL | Protein kinase superfamily protein
| chr5:7097908-7103198 FORWARD LENGTH=2600
Length=2600
Score = 3845 bits (2082), Expect = 0.0
Identities = 2369/2499 (95%), Gaps = 53/2499 (2%)
Strand=Plus/Plus
Query 1 TAAAGAGAACTTTGTGTTGACCCCTCTCTTTCCCTCCTAATTCCTTAGGGTTCCTCGAAT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1 TAAAGAGAACTTTGTGTTGA--CCTCTCTTTCCCTCCTAATTCCTTAGGGTTCCTCGATT 58
Query 61 TTTCTTTTTCACCGAAAC----A-C--A-----AC--CT-TGTCTC--TCTATCTTTCTC 103
|||||||||||||||||| | | | | || | |||| ||||||||||||
Sbjct 59 TTTCTTTTTCACCGAAACAAAAACCTTATTCCTCCTTCTCTTTCTCTGTCTATCTTTCTC 118
Query 104 TGTACGTTTTATTCACTTTCCTCCACGTGGATTTTGCATAAAAGCATGAAAATTTGTTGA 163
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 TGTACGTTTTATTCACTTTCCTCCACGTGGA-TTTGCATAAAAGCATGAAAATTTGTTGA 177
Query 164 TGGGTTTCTCTTCGACATCCAGATTCTAGCTTCCAATTCCGTaa---------aaaaaaC 214
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 TGGGTTTCTCTTCGACATCCAGATTCTAGCTTCCAATTCCGTAATTCTCCGTTAAAAAAC 237
Query 215 CCTAATTTTTCGAATTTACTCTGATCTGGGTAGAAGAATTAGGGAGTGAAGTGTCCGCAA 274
|||||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 238 CCTAATTTCTCGAATTTACTCTGATCTGTGTAG-A-AATTAGGGAGTGAAGTGTCCGCAA 295
Query 275 GTGTTTGGCAATGTCGGATGACATGGTGATGCATTTCTCCTCGAATTCTTCCAATCAGTC 334
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 296 GTGTTTGGCAATGTCGGATGACATGGTTTTGCATTTCTCCTCGAATTCTTCTAATCAGTC 355
Query 335 GGATCACTCTTTGCCCGACAAAATCGCCAAGCTTGAGGCCCGCTTGACTGGTAAGACCCC 394
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGATCACTCTTTACCCGACAAAATCGCCAAGCTTGAGGCCCGCTTGACTGGTAAGACCCC 415
Query 395 TTCCTCGGCGAAG----C-C-AC--C-ACAACTGCAGCAGCAGCAGGTCTCTGTCTGGTC 445
||||||||| ||| | | || | ||||| ||||||||||||||||||| |||||||
Sbjct 416 TTCCTCGGCCAAGCCACCACAACAACAACAACAGCAGCAGCAGCAGGTCTCTCTCTGGTC 475
Query 446 ATCTGCTTCTTCTGCCGCTGTCAAAGTCGTGACTTCCACACCCCCGGGATTGTCGGAAAC 505
||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 476 ATCTG---CTTCTGCCGCTGTCAAAGTCGTCACTTCCACACCGCCGGGATTGTCCGAAAC 532
Query 506 CTCTATCAGTGATTCCGATGACGAGAATACTGGAGATTTCCTAATCCGAGCGAATACCAA 565
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 533 CTCTATCAGTGATTCAGACGACGAGAATACTGGAGATTTCCTAATCCGAGCAAATACAAA 592
Query 566 AAAGCGACAGAAAGTTCAAGAGTCTAACAACTTCAGTGTTGTTGATCATGTGGAGCCCCA 625
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 593 AAAGCGCCAGAAAGTTCAAGAATCTAACAACTTCAGTGTTGTTGATCATGTTGAGCCACA 652
Query 626 AGAGGCAGCATATGATGGAAGGAAAAATGATGCTGAGTCCAAGACAGGCCTTGATGTAAG 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AGAGGCAGCATATGATGGAAGGAAAAATGATGCTGAGTCCAAGACAGGCCTTGATGTAAG 712
Query 686 TAAGAAGAAACAAGGTCGAGGTCGGGCTTCCTCAACTGGTAGAGGGCGTGGTTCTAAAAC 745
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 713 TAAGAAGAAACAAGGTCGAGGTCGGGCTTCGTCAACAGGTAGAGGGCGTGGTTCTAAAAC 772
Query 746 TAATAACGAAGTGACAAAATCTCAGTTTTTGGGTGCACCAGTATCAGCTGCAAATCAACA 805
||||||||| |||||||||||||||||| ||| |||||||||||||||||| | |||||
Sbjct 773 TAATAACGATGTGACAAAATCTCAGTTTGTGGTTGCACCAGTATCAGCTGCCAGTCAACT 832
Query 806 GGATGTCTCTGAGCAAAAGGATTTTAGGCCTGATGGACAACTTAGGAATGGTGAATGCTC 865
||||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 833 GGATGCCTCTGATCAAAAGGATTTTAGGCCTGATGGACAGCTCAGGAATGGTGAATGCTC 892
Query 866 TCTCCATGATGAAGACTTGACATCTTTGCGTGCAAAAATCGCTGTGCTAGAGGAGGAATT 925
|||||| ||||||||||| | |||||||||||||||||||||| |||| |||||||||||
Sbjct 893 TCTCCAGGATGAAGACTTAAAATCTTTGCGTGCAAAAATCGCTATGCTGGAGGAGGAATT 952
Query 926 GCGTAAATCTCGACAAGATTCTTCTGAGTATCACCACCTTGTCAGGAAGCTTGAGAATGA 985
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 953 GCGTAAATCTCGACAAGATTCTTCTGAGTATCACCACCTTGTCAGGAATCTTGAGAATGA 1012
Query 986 GGTAAAAGATCTGAAAGATCAGGAACAACAAGGGAAGCAAAAGACAACTAAAGTAATCTC 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGTAAAAGATCTGAAAGATCAGGAACAACAAGGGAAGCAAAAGACAACTAAAGTAATCTC 1072
Query 1046 TGACCTTCTCATATCTGTTTCCAAAACTGAGAGACAAGAAGCAAGAACGAAAGTCAGACA 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1073 GGACCTTCTCATATCTGTTTCCAAAACTGAGAGACAAGAAGCAAGAACGAAAGTCAGAAA 1132
Query 1106 TGAATCTTTGCGATTAGGCAGTGTTGGTGTTCTCAGGACAGGAACGATCATAGCTGAGAC 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TGAATCTTTGCGATTAGGCAGTGTTGGTGTTCTCAGGACAGGAACGATCATAGCTGAGAC 1192
Query 1166 ATGGGAGGATGGACAAATGTTGAAAGATCTGAATGCTCAACTTAGACAATTGCTGGAAAC 1225
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATGGGAGGACGGACAAATGTTGAAAGATCTGAATGCTCAACTTAGACAATTGCTGGAAAC 1252
Query 1226 CAAGGAGGCTATTGAGAGACAAAGAAAGTTCCTTAAGAAACGACAAAATGGTGGTGTAGA 1285
|||||||||||||||||||||||||||||| ||||||||||||||||| | | || ||
Sbjct 1253 CAAGGAGGCTATTGAGAGACAAAGAAAGTTACTTAAGAAACGACAAAA---T-G-GT-GA 1306
Query 1286 TAAGAATGACGGAACTGACACAGAATCAGGAGCACAAGAGGAAGATATCATCCCTGACGA 1345
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1307 TAAGAATGACGGAACCGACACAGAATCAGGAGCACAGGAGGAAGATATCATCCCTGACGA 1366
Query 1346 GGTTTACAAGTCTCGTCTTGCTAGTATTAAGCGGGAAGAGGAAGTTGTTTTGCGTGAGAG 1405
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1367 GGTTTACAAGTCTCGTCTTACTAGTATTAAGCGGGAAGAGGAAGCTGTTTTGCGTGAGAG 1426
Query 1406 AGAAAGGTACACATTGGAGAAGGGGCTGCTTATGAGGGAGATGAAACGCATACGAGATGA 1465
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1427 AGAAAGGTACACATTAGAGAAGGGGCTACTTATGAGGGAGATGAAACGCATACGAGATGA 1486
Query 1466 AGATGGTTCTCGTTTCAACAATTTCCCAGTTTTGAATAGCCGATATGCTCTTCTAAATCT 1525
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1487 AGATGGTTCTCGTTTCAACCATTTCCCAGTTTTGAATAGCCGCTATGCTCTTCTAAATCT 1546
Query 1526 TCTTGGTAAAGGCGGATTTAGTGAAGTCTATAAGGCATATGATTTGGTGGACCATAGATA 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 TCTTGGTAAAGGCGGATTTAGTGAAGTCTATAAGGCATATGATTTGGTGGACCATAGATA 1606
Query 1586 TGTTGCGTGCAAGCTTCATGGTTTAAATGCTCAGTGGAGTGAAGAAAAGAAGCAAAGTTA 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 TGTTGCGTGCAAGCTTCATGGTTTAAATGCTCAGTGGAGTGAAGAAAAGAAGCAAAGTTA 1666
Query 1646 CATCCGCCATGCCAACAGGGAATGTGAGATCCATAAAAGTCTTGTGCATCACCACATTGT 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 CATCCGCCATGCCAACAGGGAATGTGAGATCCATAAAAGTCTTGTGCATCACCACATTGT 1726
Query 1706 TCGGCTTTGGGATAAATTTCATATCGACATGCATACATTCTGCACCGTTCTGGAATATTG 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TCGGCTTTGGGATAAATTTCATATCGACATGCATACATTCTGCACCGTTCTGGAATATTG 1786
Query 1766 TAGTGGAAAAGACCTTGATGCTGTTTTAAAGGCTACACCTAATCTTCCTGAGAAAGAAGC 1825
|||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1787 TAGTGGGAAAGACCTTGATGCTGTATTAAAGGCAACATCTAATCTTCCTGAGAAAGAAGC 1846
Query 1826 GAGGATTATCATTGTGCAAATAGTTCAAGGCCTTGTATATCTGAACAAAAAGTCACAGAA 1885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 AAGGATTATCATTGTGCAAATAGTTCAAGGCCTTGTATATCTGAACAAAAAGTCACAGAA 1906
Query 1886 GATAATCCACTATGATCTGAAGCCTGGTAATGTTCTCTTTGATGAGTTTGGAGTAGCAAA 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 GATAATCCACTATGATCTGAAGCCTGGTAATGTTCTCTTTGATGAGTTTGGAGTAGCAAA 1966
Query 1946 AGTGACTGATTTTGGTCTGAGCAAGATAGTGGAGGACAATGTTGGTTCTCAAGGAATGGA 2005
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 AGTAACTGATTTTGGTCTAAGCAAGATAGTGGAGGACAATGTTGGTTCTCAAGGAATGGA 2026
Query 2006 GCTTACATCACAGGGAGCTGGAACATACTGGTACTTGCCCCCAGAATGCTTTGAGCTTAA 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 GCTTACATCACAGGGAGCTGGAACATACTGGTACTTGCCCCCAGAATGCTTTGAGCTTAA 2086
Query 2066 CAAAACTCCTATGATCTCATCAAAGGTCGATGTATGGTCAGTTGGTGTTCTATTTTACCA 2125
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2087 CAAAACTCCTATGATCTCATCAAAGGTTGATGTATGGTCAGTTGGTGTTCTGTTTTACCA 2146
Query 2126 AATGCTATTTGGAAAGCGACCTTTTGGACATGACCAAAGCCAAGAACGGATACTACGAGA 2185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2147 AATGCTGTTTGGAAAGCGACCTTTTGGACATGACCAAAGCCAAGAACGGATACTAAGAGA 2206
Query 2186 AGACACAATCATTAAAGCCAAAAAGGTTGAGTTCCCAGTAACAAGACCCGCTATCTCAAA 2245
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2207 AGACACAATCATTAAAGCCAAAAAGGTTGAGTTCCCAGTAACAAGACCTGCCATCTCAAA 2266
Query 2246 TGAAGCGAAGGATTTGATTCGACGGTGTCTAACATATAACCAGGCCGATAGGCCGGATGT 2305
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2267 TGAAGCGAAGGATTTGATTCGACGGTGTCTAACATATAACCAAGAAGATAGGCCGGATGT 2326
Query 2306 TCTAACAATGGCACAGGATCCATATCTTTCATACTCTAAGAAATGAGAGTGTGTAGTCTT 2365
|||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||
Sbjct 2327 TCTAACAATGGCACAGGATCCATATCTTGCCTACTCTAAGAAGTGAGATTGTGTAGTCTT 2386
Query 2366 CACAAACAAACCAGAGATACTAAAGGACCAGATCCTAGAAT-TCTTTTTGGTATAGATTA 2424
|| ||||||||||||||| ||||| |||||||||||||||| | |||||||||||| |||
Sbjct 2387 CAAAAACAAACCAGAGATGCTAAAAGACCAGATCCTAGAATAT-TTTTTGGTATAGCTTA 2445
Query 2425 TAAAGTTAT-TGTTTTGTTTGTCTAAATATTTTATCTCC 2462
||||||| | |||||||||||||||||||||||||||||
Sbjct 2446 TAAAGTT-TCTGTTTTGTTTGTCTAAATATTTTATCTCC 2483
Score = 122 bits (66), Expect = 1e-26
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2463 TGTCTTCCTTTTATTATGTAACATGTTATGTATATTCTTCATGTTTTATAATAGAAGAGA 2522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2528 TGTCTTCCTTTTATTATGTAACATGTTATGTATATTCTTCATGTTTTATAATAGAAGAAA 2587
Query 2523 GATGAAAGTTGG 2534
| ||||||||||
Sbjct 2588 GCTGAAAGTTGG 2599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125768526101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5