BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489002

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20935.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   510    3e-144


> AT5G20935.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF3148 (InterPro:IPR021495); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:7103470-7104023 FORWARD LENGTH=422
Length=422

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 313/331 (95%), Gaps = 2/331 (1%)
 Strand=Plus/Plus

Query  1    AAGATGCAATATGGCCTGTGGTACAGTGGATCCTTCACGCCACGAATCAGTGTGAGATGC  60
            ||||||||||||||| | ||| |||||||||||||||||| |||| ||||||||||||||
Sbjct  15   AAGATGCAATATGGCATATGGCACAGTGGATCCTTCACGCAACGAGTCAGTGTGAGATGC  74

Query  61   TGTGAAATAGCAAACGAGCCTCCACGACCAAAATCGAAGCTCCAAGTCGGATCACCAATC  120
            |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct  75   TGTGAAATCGCAAACGAGGCTCCACGACCAAAATCGAAGCTCCAAGTAGGATCACCGATC  134

Query  121  ATCATCGTTGAAGC-CCCGAAAGTTATAAAAACGGCAGCTTCAATGCCTTGCCTTAGGGC  179
            |||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct  135  ATCATCGTCGAAGCTCCC-AAAGTTATAAAAACGGCCGCTTCAATGCCTTGCCTTAGGGC  193

Query  180  TAACTCTGGCTTGGTCAAGCCTGGCGATGTTGGAAGAATCGTGTCGAGAAAACCGAAGGA  239
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  194  CAACTCTGGCTTGGTCAAGCCTGGCGATGTTGGAAGAATCGTGTCGAGAAAACCAAAGGA  253

Query  240  CTTGTGGGCAGTTCGACTCTCCATTGGAACCTATCTATTAGATGGTAAATATTTCAAAGC  299
            ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  254  CTTGTGGGCAGTTAGACTCTCCATTGGAACATATCTTTTAGATGGTAAATATTTCAAAGC  313

Query  300  TTTAGAGCTTGACGAAGGAGATAGTGATTGA  330
            |||||||||||||||||||||||||||||||
Sbjct  314  TTTAGAGCTTGACGAAGGAGATAGTGATTGA  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5