BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489003
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20940.1 | Symbols: | Glycosyl hydrolase family protein | c... 2926 0.0
> AT5G20940.1 | Symbols: | Glycosyl hydrolase family protein |
chr5:7103927-7106701 REVERSE LENGTH=2078
Length=2078
Score = 2926 bits (1584), Expect = 0.0
Identities = 1833/1951 (94%), Gaps = 26/1951 (1%)
Strand=Plus/Plus
Query 1 AATAATCAGCTCTTGACTATGTTATTGAGAGTGAAGGAGAGGGCAAAGATGGGGAGTTCG 60
||||||||||||| |||||| |||||||||||||| |||| | ||||||||||||||||
Sbjct 1 AATAATCAGCTCTCGACTATTTTATTGAGAGTGAAAGAGAAGACAAAGATGGGGAGTTCA 60
Query 61 AGTTACTTG-T---TAC--TAGGTCTTCTTCTGCTCTGCTGTACCGTGGCAGCTAATAAA 114
||||||||| | || |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 AGTTACTTGCTACAAACGTTAGGCCTTCTGCTGCTCTGCTGTACCGTGGCAGCTAATAAA 120
Query 115 GAACCACTTG-AGAACGCCAAGTATAAGGACCCAAAAGAGCCATTGGGAGTCAGGATCAA 173
| |||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 GTACCACTCGCA-AACGCCAAGTATAAGGACCCAAAAGAGCCACTGGGAGTCAGGATCAA 179
Query 174 GAACCTAATGAGCCATATGACCCTTGAAGAGAAAATCGGGCAGATGGTTCAGGTTGAACG 233
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 180 GAACCTGATGAGCCATATGACCCTTGAAGAGAAAATCGGACAGATGGTTCAGGTGGAACG 239
Query 234 CGTCAATGCCACAACCGAAGTCATGAAAAAATACTTCGGAATTATGTTTTTAGGGAGTGT 293
|||||||||||||||||||||||| |||| |||||| | | ||||||||
Sbjct 240 TGTCAATGCCACAACCGAAGTCATGCAAAAGTACTTC--------G----TCGGGAGTGT 287
Query 294 ATTTAGCGGGGGAGGGAGTGTGCCGACGCCATATGCCAGTCCTAAAGCTTGGGTGAACAT 353
|||||||| |||||||||||||||| ||||||| | ||||| ||||||||||||||||
Sbjct 288 GTTTAGCGGAGGAGGGAGTGTGCCGAAGCCATATATCGGTCCTGAAGCTTGGGTGAACAT 347
Query 354 GGTGAATGAGATCCAAAAGAAAGCTCTTTCGACCCGCTTAGGTATTCCCATAATTTACGG 413
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 348 GGTGAATGAGGTCCAAAAGAAAGCTCTTTCAACCCGCTTAGGTATTCCCATAATTTACGG 407
Query 414 GATCGATGCTGTTCATGGTCACAACACCGTGTACAACGCCACCATTTTCCCACATAACAT 473
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 408 GATCGATGCTGTTCATGGTCACAACACCGTGTACAACGCCACCATTTTCCCGCATAACGT 467
Query 474 AGGCCTCGGAGTCACCAGGGATCCTGGCCTTGTGAAGAGAATTGGTGAAGCAACTGCGCT 533
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 468 AGGCCTCGGAGTCACCAGGGATCCTGGTCTTGTGAAGAGAATTGGTGAAGCAACTGCGCT 527
Query 534 TGAAGTTCGAGCAACAGGAATCCAATATGTCTTTGCTCCATGTATTGCAGTGTGTAGGGA 593
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 528 TGAAGTTAGAGCAACAGGAATCCAATATGTCTTTGCTCCATGCATTGCAGTGTGTAGGGA 587
Query 594 CCCTAGATGGGGAAGATGCTATGAGAGCTACAGTGAGGATCACAAAATCGTTCAACAGAT 653
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 588 CCCTAGATGGGGAAGATGCTATGAGAGCTATAGTGAGGATCACAAAATAGTTCAACAGAT 647
Query 654 GACTGAGATCATACCTGGTTTGCAAGGTGACCTTCCCACCGGTCAAAAGGGTGTTCCTTA 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GACTGAGATCATACCTGGTTTGCAAGGTGACCTTCCCACCGGTCAAAAGGGTGTTCCTTT 707
Query 714 CGTCGCTGGAAAGACCAAAGTTGCAGCCTGTGCTAAACACTTTGTTGGAGATGGAGGTAC 773
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 708 CGTCGCTGGGAAGACCAAAGTCGCAGCCTGTGCTAAACACTTCGTTGGAGATGGAGGTAC 767
Query 774 ATTGAGAGGGATGAACGCGAATAACACAGTTATTAATACAAATGGATTGCTGGGCATTCA 833
||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||
Sbjct 768 ATTGAGAGGGATGAACGCGAACAACACGGTTATTAATTCAAATGGATTGCTGGGGATTCA 827
Query 834 CATGCCAGCTTATTACGATGCGGTAAAAAAGGGCGTTGCGACAGTTATGGTGTCCTACTC 893
||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 828 CATGCCAGCTTATCACGATGCGGTAAACAAGGGCGTTGCAACAGTTATGGTATCCTACTC 887
Query 894 GTCCATAAACGGGTTGAAAATGCATGCCAATAAGAAACTTATCACGGATTTCCTCAAGAA 953
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 888 GTCCATAAACGGGTTGAAAATGCATGCTAATAAGAAACTTATCACGGGTTTCCTCAAGAA 947
Query 954 CAAGCTCAAGTTCAGGGGCATTGTCATCTCGGATTATCTAGGTGTTGATCAGATCAACAC 1013
||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 948 CAAACTCAAGTTCAGGGGCATTGTCATCTCCGACTATTTAGGTGTTGATCAGATCAACAC 1007
Query 1014 ACCTCTTGGTGCTAACTATTCACACTCTGTGTATGCCGCTATCACTGCTGGACTCGATAT 1073
||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 1008 ACCTCTTGGTGCTAATTATTCACACTCTGTGTATGCTGCTACCACTGCGGGACTCGATAT 1067
Query 1074 GTTCATGGGTTCATCAAACTTGACCAAATTAATCGACGAGCTAACCAGTCAGGTGAAGCG 1133
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GTTCATGGGCTCATCAAACTTGACCAAATTAATCGACGAGCTAACCAGTCAGGTGAAGCG 1127
Query 1134 AAAACTCATCCCGATGAGCAGAATCGACGATGCTGTGAAGAGAATCTTAAGAGTCAAATT 1193
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1128 AAAATTCATCCCGATGAGCAGAATCGACGATGCTGTAAAGAGAATCTTAAGAGTCAAATT 1187
Query 1194 CACAATGGGGCTCTTTGAGAATCCCATAGCTGATCATAGCTTGGCCAACCAGCTCGGTAG 1253
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1188 CACAATGGGGCTCTTTGAGAATCCCATTGCTGATCATAGCTTGGCCAAGAAGCTCGGTAG 1247
Query 1254 TAAGGAACACAGAGAACTGGCAAGGGAAGCAGTGAGGAAGTCTCTGGTGTTGTTGAAGAA 1313
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1248 TAAGGAACACAGGGAACTGGCAAGGGAAGCAGTGAGGAAATCTCTCGTGTTGTTGAAGAA 1307
Query 1314 CGGCGAAAATGCGGATAAGCCGTTGCTTCCTCTGCCAAAGAAAGCCAACAAGATCCTTGT 1373
|| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1308 TGGTGAAAACGCAGATAAGCCGTTGCTTCCTCTGCCAAAGAAAGCCAATAAGATCCTTGT 1367
Query 1374 TGCAGGAACACATGCTGATAACTTGGGATACCAATGTGGTGGCTGGACAATCACATGGCA 1433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CGCAGGAACACATGCTGATAACTTGGGATACCAATGTGGTGGCTGGACAATCACATGGCA 1427
Query 1434 AGGCCTTAATGGCAACAATCTCACCATTGGAACAACGATCCTCACCGCAGTGAAGAACAC 1493
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1428 AGGCCTTAATGGCAACAATCTCACCATTGGAACAACGATCCTCGCCGCAGTGAAGAAGAC 1487
Query 1494 GGTGGATCCGAAAACGCAAGTTATCTACAATCAAAACCCCGACACCAATTTCGTCAAGTC 1553
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1488 GGTGGATCCGAAGACGCAAGTTATCTACAATCAAAACCCCGACACCAATTTCGTCAAGGC 1547
Query 1554 CGGCGACTTCGATTACTCAATCGTGGTCATCGGAGAGAAACCGTACGCGGAGGGATTCGG 1613
||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1548 CGGTGACTTCGATTACGCAATCGTGGCCGTCGGAGAGAAACCGTACGCGGAGGGATTCGG 1607
Query 1614 AGACAGCACGAACTTAACCATATCCGAACCAGGTACGAGCACAATCGAAAACGTGTGCGC 1673
|||||| ||||||||||||||||| ||||||||| ||||||| |||| |||||||||||
Sbjct 1608 AGACAGTACGAACTTAACCATATCGGAACCAGGTCCGAGCACGATCGGGAACGTGTGCGC 1667
Query 1674 ATCGGTGAAATGTGTGGTGGTGGTTGTATCGGGACGTCCGGTGGTGATGCAGCCGTACAT 1733
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1668 ATCGGTGAAATGTGTGGTGGTGGTTGTATCGGGACGTCCGGTGGTGATGCAG----A--T 1721
Query 1734 TTCGAACATCGATGCTCTAGTGGCGGCGTGGCTACCGGGAACGGAAGGTCAAGGAGTGGC 1793
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1722 TTCGAACATCGATGCTCTAGTGGCGGCGTGGCTTCCGGGAACGGAAGGTCAAGGAGTGGC 1781
Query 1794 TGATGTTTTGTTCGGAGATTACGGATTCACCGGGAAATTGGCTCGGACGTGGTTCAAGAC 1853
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1782 TGATGTTTTGTTCGGAGATTATGGATTCACCGGGAAATTGGCTCGGACGTGGTTTAAGAC 1841
Query 1854 AGTGGATCAGTTGCCGATGAACGTTGGTGACCCGCATTATGACCCGTTGTACCCGTTTGG 1913
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1842 AGTGGATCAGTTGCCGATGAACGTTGGTGACCCGCATTACGACCCGTTGTACCCGTTTGG 1901
Query 1914 ATTCGGGTTGGTCACTAACCCAAATTAACGG 1944
|||||||||| ||||||| ||||||||||||
Sbjct 1902 ATTCGGGTTGATCACTAAACCAAATTAACGG 1932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97238455665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5