BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489011
Length=2164
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20990.1 | Symbols: B73, SIR4, CNX, CHL6, CNX1 | molybdopter... 3411 0.0
> AT5G20990.1 | Symbols: B73, SIR4, CNX, CHL6, CNX1 | molybdopterin
biosynthesis CNX1 protein / molybdenum cofactor biosynthesis
enzyme CNX1 (CNX1) | chr5:7128475-7133476 REVERSE LENGTH=2354
Length=2354
Score = 3411 bits (1847), Expect = 0.0
Identities = 2080/2189 (95%), Gaps = 30/2189 (1%)
Strand=Plus/Plus
Query 1 CATATCTAATCCGATTGCCAAACAAGGCCATCGTCTCTCTCTATCAAACA--G-C-G-AA 55
|||||||||||||||||| |||||||||||||||||||||||||||| || | | | ||
Sbjct 17 CATATCTAATCCGATTGCTAAACAAGGCCATCGTCTCTCTCTATCAATCAGCGACGGAAA 76
Query 56 TGGATGGCCA--TGAAGGTTGTTGTAGCGGCGGCGGCGGAAAGACGGAGATGATACCGAC 113
| |||| | | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 77 TAAATGG-AAGGTCAAGGTTGTTGTGGCGGCGGCGGCGGAAAGACGGAGATGATACCGAC 135
Query 114 GGAGGAAGCTCTGAGGATAGTACTCGGCGTCTCTAAGCGTCTTCCTCCGGTAATCGTATC 173
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 136 GGAGGAAGCTCTGAGAATAGTATTCGGCGTCTCTAAGCGTCTGCCTCCGGTAATCGTATC 195
Query 174 GCTGCATGAAGCACTTGGGAAAGTGTTGGCGGAGGATATTCGAGCTCCTGATCCTCTGCC 233
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 196 GCTGTATGAAGCACTTGGGAAAGTGTTGGCGGAAGATATTCGAGCTCCTGATCCTTTACC 255
Query 234 TCCATATCCTGCTTCCGTTAAGGATGGGTACGCTGTTGTTGCTTCAGATGGTCCTGGAGA 293
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 256 TCCATATCCTGCTTCCGTCAAGGATGGGTACGCAGTTGTTGCTTCAGATGGTCCTGGAGA 315
Query 294 ATATCCGGTGATTACTGAATCAAGAGCTGGGAATGATGGACTGGGTGTGACTGTTACTCC 353
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 316 ATATCCGGTGATTACTGAATCAAGAGCTGGGAATGATGGTTTGGGTGTGACTGTTACTCC 375
Query 354 TGGAACTGTGGCTTATGTAACTACTGGTGGACCTATACCTGATGGTGCAGATGCAGTTGT 413
|||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 376 TGGAACTGTGGCTTATGTGACAACTGGTGGACCTATACCTGATGGTGCGGACGCAGTTGT 435
Query 414 CCAAGTTGAGGACACTAAAGTAATTGGAGACGTCTCCACTGAATCAAAAAGAGTAAAAAT 473
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 436 CCAAGTTGAGGACACTAAAGTAATTGGAGACGTCTCAACTGAATCAAAAAGAGTAAAAAT 495
Query 474 ACTGATTCAAACCAAGAAAGGCACTGACATCCGTAGAGTGGGTTGTGATATTGAGAAAGA 533
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 496 ACTGATTCAAACCAAGAAAGGCACCGATATCCGTAGAGTGGGTTGTGATATTGAGAAAGA 555
Query 534 TGCAACTGTACTAAAAACTGGAGAAAGAATTGGTGCCTCAGAAATTGGCTTGCTAGCAAC 593
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 556 TGCAACTGTACTAACAACTGGAGAAAGAATTGGTGCCTCAGAAATCGGCTTGCTAGCAAC 615
Query 594 CGCAGGAGTAACAATGGTGAAGGTATATCCTATGCCAACAGTTGCTATTCTCTCTACTGG 653
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 616 CGCAGGAGTAACCATGGTGAAGGTATATCCTATGCCAATAGTTGCTATTCTCTCTACTGG 675
Query 654 GGACGAACTTGTCGAGCCGACAGCTGGGACTTTAGGTCGTGGGCAGATTAGAGACTCAAA 713
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 676 AGATGAACTTGTGGAGCCGACAGCTGGGACTTTAGGTCGTGGGCAGATTAGGGACTCAAA 735
Query 714 TCGAGCAATGTTAGTGGCAGCAGTGATGCAGCACCAATGCAAAGTTGTTGACCTTGGAAT 773
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 736 TCGAGCAATGTTAGTGGCAGCAGTGATGCAGCAGCAATGCAAAGTTGTTGACCTTGGAAT 795
Query 774 TGTTAGAGATGATAAAAAAGAACTTGAG-AGAGTTTTGGACGAGGCCATATCCTCTGGAG 832
|||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 796 TGTTAGAGATGATAGAAAAGAACTTGAGAAG-GTTTTGGACGAGGCCGTATCCTCTGGAG 854
Query 833 TTGATATTATTTTAACTTCTGGTGGTGTCTCAATGGGAGACAGGGATTTTGTCAAGCCAT 892
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 855 TTGATATTATTTTAACTTCTGGTGGTGTTTCAATGGGAGACAGGGATTTCGTCAAGCCAT 914
Query 893 TGCTCGAAGAGAAAGGGAAAGTATATTTCAGCAAGGTATTAATGAAGCCCGGGAAACCTT 952
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 915 TACTCGAAGAGAAAGGGAAAGTATATTTCAGCAAGGTATTGATGAAACCCGGGAAACCTT 974
Query 953 TGACGTTCGCCGAGATTAGTGCAAAACCAACTGAAAGTATGCTGGGGAAAACAGTCCTTG 1012
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TGACCTTCGCCGAGATTAGAGCAAAACCAACTGAAAGTATGCTGGGGAAAACAGTCCTTG 1034
Query 1013 CATTTGGATTACCAGGAAATCCTGTGAGCTGTTTGGTTTGTTTCAATATCTTTGTTGTGC 1072
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CATTTGGATTACCTGGAAATCCTGTGAGCTGTTTGGTTTGTTTCAATATCTTTGTTGTGC 1094
Query 1073 CTACAATCCGCCAGCTTGCAGGATGGACAAGCCCCCATCCACTGAGAGTGCGAGC-TCGA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1095 CTACAATCCGCCAGCTTGCAGGATGGACAAGCCCCCATCCACTGAGAGTGCGA-CTTCGA 1153
Query 1132 CTTCAGGAGCCCATAAAGTCCGATCCCATCCGTCCCGAGTTTCATCGGGCCATAATCAAA 1191
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1154 CTTCAGGAGCCCATCAAGTCTGATCCCATCCGCCCCGAGTTTCATCGGGCCATAATCAAA 1213
Query 1192 TGGAAAGACAACGATGGATCAGGAACTCCCGGATTTGTTGCTGAGAGCACTGGACATCAG 1251
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1214 TGGAAAGACAACGATGGATCAGGGACTCCCGGATTTGTTGCTGAGAGCACTGGACATCAG 1273
Query 1252 ATGAGCAGTCGGCTTTTAAGTATGAGATCGGCTAATGCTTTGTTGGAGTTGCCTGCTACG 1311
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1274 ATGAGCAGTAGGCTTTTAAGTATGAGGTCGGCTAATGCTTTGTTGGAGTTGCCTGCTACG 1333
Query 1312 AGCAATGTACTTTCTGCTGGAACTTCTGTATCAGCTGTAATTGTTTCTGATATTAGTGGC 1371
| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 1334 GGAAATGTGCTTTCTGCTGGAAGTTCTGTATCAGCTATAATTGTTTCTGATATTAGTGCC 1393
Query 1372 TTTCCAATAGACAAGAAAGCCTCATTATCAGAACCAGGATCTATTCGGAAAGaaaaaaaG 1431
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1394 TTTTCAATAGACAAGAAAGCCTCATTATCAGAACCAGGCTCTATTCGGAAAGAAAAGAAG 1453
Query 1432 TACGATGAAGAACCTGGGCCTGAGTATAAAGTGGCTATTCTTACCGTCAGTGATACTGTC 1491
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 TACGATGAAGTACCTGGGCCTGAGTATAAAGTGGCTATTCTTACCGTCAGTGATACTGTC 1513
Query 1492 TCAGCTGGGGCTGGACCTGATCGAAGTGGGCCCAGAGCTGTGTCAGTGGTTGATTCCTCG 1551
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1514 TCAGCTGGGGCTGGACCTGATCGAAGTGGGCCCAGAGCTGTGTCAGTAGTTGATTCCTCG 1573
Query 1552 TCTGAAAAACTGGGAGGAGCTAAGGTAGTTGCAACAGCTGTTGTCCCCGATGAAGTGGAA 1611
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 TCTGAAAAACTGGGGGGAGCTAAGGTAGTTGCAACAGCTGTTGTCCCCGATGAAGTGGAA 1633
Query 1612 AGAATCAAAGACATTCTCCAGAAATGGAGTGATGTTGACGAAATGGATCTCATTCTTACA 1671
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1634 AGAATAAAAGACATTCTTCAGAAATGGAGCGATGTTGACGAAATGGATCTCATTCTTACA 1693
Query 1672 CTTGGTGGTACTGGCTTCACTCCGAGAGATGTAACACCTGAAGCAACGAAAAAGGTGATC 1731
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1694 CTTGGTGGTACTGGCTTCACTCCAAGAGATGTAACACCTGAAGCAACGAAAAAGGTGATC 1753
Query 1732 GAGAGAGAAACACCCGGTCTCCTCTTTGTTATGATGCAAGAGAGCTTAAAGATCACGCCA 1791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1754 GAGAGAGAAACACCCGGTCTCCTCTTTGTTATGATGCAAGAGAGCTTAAAGATCACTCCA 1813
Query 1792 TTTGCGATGCTCTCACGCTCTGCAGCAGGAATTAGAGGCTCAACACTGATAATCAACATG 1851
|||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1814 TTTGCGATGCTCTCGCGCTCTGCGGCAGGAATTAGAGGCTCAACATTGATAATCAACATG 1873
Query 1852 CCTGGAAACCCAAACGCAGTGGCCGAGTGTATGGAGGCTCTGTTACCAGCATTGAAGCAC 1911
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1874 CCTGGAAACCCAAACGCAGTGGCCGAGTGTATGGAGGCTCTGTTACCTGCATTGAAACAC 1933
Query 1912 GCACTGAAGCAGATCAAAGGAGACAAGAGAGAGAAACATCCGAAGCACATACCTCACGCA 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 GCACTGAAGCAGATCAAAGGAGACAAGAGAGAGAAACATCCGAAGCACATACCTCACGCA 1993
Query 1972 GAAGCCTCCAC-ACCGACTGATACATGGGACCAAAGCTATAAGTCGGCCTATGAGACGGG 2030
|||||| || | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1994 GAAGCCACC-CTACCGACTGATACATGGGACCAAAGCTATAAGTCAGCCTATGAGACGGG 2052
Query 2031 AGAAAAGAAAGAGGAGGCTGGATGTTCTTGTACTCACTAAAACTA---A--------AC- 2078
||| |||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 2053 AGAGAAGAAAGAAGAGGCTGGATGTTCTTGTACTCACTAAAACTCTCCAGCTTCTCCACA 2112
Query 2079 ---CCCCAAGTGATTTTGCTCTGCACTGTTGTGACTGTAAAACTTTTGACAAGTTTTGTG 2135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 AAGCCCCAAGTGATTTTGCTCTGCACTGTTGTGACTGTAAAACTTTTGACAAGTTTTGTG 2172
Query 2136 GCTTACTGAGTTAGTTACACGAAACCCAA 2164
|| ||||||||||||||||||||||||
Sbjct 2173 T-TTGCTGAGTTAGTTACACGAAACCCAA 2200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107328765210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5