BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489014 Length=1062 Score E Sequences producing significant alignments: (Bits) Value AT5G21050.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 1663 0.0 > AT5G21050.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:7147890-7148957 FORWARD LENGTH=1068 Length=1068 Score = 1663 bits (900), Expect = 0.0 Identities = 1016/1071 (95%), Gaps = 12/1071 (1%) Strand=Plus/Plus Query 1 ATGTCTGATTCTTCCTCAAGCCATGACTCTCCACCTTCTCCAGCGATCACCGGAGATTCA 60 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1 ATGTCTGATTCTTCCTCAAGCCATGACTCACCACCTTCTCCGGCGATCACCGGAGATTCA 60 Query 61 GAAACCACCA-TAACC-AC--CG-ATCCAGAATCCAACACAAAATGTCAAACAGCAATCC 115 ||||||| || | ||| || || || ||||||||||||||||||||||||||||||||| Sbjct 61 GAAACCA-CAGTGACCAACAACGAAT-CAGAATCCAACACAAAATGTCAAACAGCAATCC 118 Query 116 AATCCTTATCCACGATCGTCAC-AACTACAAACATCCCTTCCACAATCTCTACCCTCCTC 174 |||||||||||||||||||||| ||| |||||||||||||||||||| | | ||||||| Sbjct 119 AATCCTTATCCACGATCGTCACAAAC-ACAAACATCCCTTCCACAATAACCATCCTCCTC 177 Query 175 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 237 Query 235 GGAGACAACAACCTCTGCCGTTGGCTCTACGACACCTTCCAATCCGCTGAACCATCGCTT 294 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 238 GGAGATAACAACCTCTGCCGTTGGCTCTACGACACATTCCAATCCGCGGAACCATCGCTT 297 Query 295 CAGATTCTTGTCCTTCGATTCGTTCCTTTAATCGCTGGCCTCTACCTCTCTCGTGTCCCT 354 ||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 298 CAGCTTCTCGTCCTCCGATTCGTTCCTTTAATCGCTGGTCTCTACCTCTCTCGTGTCCCT 357 Query 355 CTCCGTCAACCACAAGCCGGATTCGAAGCGGTTTTACTCGCTCTCTACGCGCACGAAACA 414 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 358 CTCCGTCAACCACAAGCCGGATTCGAAGCCGTTTTACTCGCTCTCTACGCGCACGAAACA 417 Query 415 ACCTCACGCGCCGGTCAAGCGATAACCGTCAACATTCCAGATCTCTCACATCCCAGCATT 474 |||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct 418 ACCTCACGTGCCGGTCAAGCAATAACCGTCAACATTCCAGATCTCTCATATCCAAGCATT 477 Query 475 TACCACGAATCCAAAGGTCTCACTAGG---AACAATTCAACGTGCCTCAACATCGCCGTC 531 ||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| || Sbjct 478 TACCATGAATCCAAAGGTCTCACAAGGAACAACAACTCAACGTGCCTCAACATCGCTGTG 537 Query 532 ATCTCCTCCACGTTAGATCCACACGGGACTGTGAGATCCACGCGCCGCGCGAGGATCGTC 591 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 538 ATCTCCTCCACGTTAGATCCACACGGGACGGTTAGATCCACGCGCCGCGCGAGGATCGTC 597 Query 592 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 657 Query 652 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAGTCTTCA 711 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 658 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAATCTTCA 717 Query 712 AGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 771 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 777 Query 772 GGAGGAAGATCTGAAAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTGCAACCG 831 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 778 GGAGGAAGATCTGAGAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTCCAACCG 837 Query 832 ATTTTAAGAATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAATTAGCG 891 ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 838 ATTTTGAGGATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAGTTATCT 897 Query 892 GAGGCGGCGAATAAAGCTTGTCAGAGCTTGTATCTCCGATCTCTGCATGATATAAATCCG 951 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 898 GAGGCGGCGAATAAAGCTTGTCAGAGTTTGTATCTCCGATCTCTGCATGATATAAATCCG 957 Query 952 AAGGCGATTCTGGCTACCGGAAGTCTTCTCCGGCTCCGGGAGATGACTCTTGATCCCAAG 1011 ||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||||| Sbjct 958 AAGGCGATTTTGGCTACCGGAAGTCTTCTTCGGCTCCGTGAGATGGCTCTTGATCCCAAG 1017 Query 1012 AATCAAATAGATCACACTGAGATATCAAACGACACCGTTCTCTCTGTTTGA 1062 |||||||| |||||||||||| |||||||||||||||||||||| |||||| Sbjct 1018 AATCAAATCGATCACACTGAGCTATCAAACGACACCGTTCTCTCCGTTTGA 1068 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52007764620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5