BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489014
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21050.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 1663 0.0
> AT5G21050.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED
IN: 14 plant structures; EXPRESSED DURING: 8 growth stages;
CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1);
Has 206 Blast hits to 206 proteins in 60 species:
Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants
- 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI
BLink). | chr5:7147890-7148957 FORWARD LENGTH=1068
Length=1068
Score = 1663 bits (900), Expect = 0.0
Identities = 1016/1071 (95%), Gaps = 12/1071 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGATTCTTCCTCAAGCCATGACTCTCCACCTTCTCCAGCGATCACCGGAGATTCA 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGTCTGATTCTTCCTCAAGCCATGACTCACCACCTTCTCCGGCGATCACCGGAGATTCA 60
Query 61 GAAACCACCA-TAACC-AC--CG-ATCCAGAATCCAACACAAAATGTCAAACAGCAATCC 115
||||||| || | ||| || || || |||||||||||||||||||||||||||||||||
Sbjct 61 GAAACCA-CAGTGACCAACAACGAAT-CAGAATCCAACACAAAATGTCAAACAGCAATCC 118
Query 116 AATCCTTATCCACGATCGTCAC-AACTACAAACATCCCTTCCACAATCTCTACCCTCCTC 174
|||||||||||||||||||||| ||| |||||||||||||||||||| | | |||||||
Sbjct 119 AATCCTTATCCACGATCGTCACAAAC-ACAAACATCCCTTCCACAATAACCATCCTCCTC 177
Query 175 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 237
Query 235 GGAGACAACAACCTCTGCCGTTGGCTCTACGACACCTTCCAATCCGCTGAACCATCGCTT 294
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 238 GGAGATAACAACCTCTGCCGTTGGCTCTACGACACATTCCAATCCGCGGAACCATCGCTT 297
Query 295 CAGATTCTTGTCCTTCGATTCGTTCCTTTAATCGCTGGCCTCTACCTCTCTCGTGTCCCT 354
||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 CAGCTTCTCGTCCTCCGATTCGTTCCTTTAATCGCTGGTCTCTACCTCTCTCGTGTCCCT 357
Query 355 CTCCGTCAACCACAAGCCGGATTCGAAGCGGTTTTACTCGCTCTCTACGCGCACGAAACA 414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 CTCCGTCAACCACAAGCCGGATTCGAAGCCGTTTTACTCGCTCTCTACGCGCACGAAACA 417
Query 415 ACCTCACGCGCCGGTCAAGCGATAACCGTCAACATTCCAGATCTCTCACATCCCAGCATT 474
|||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 418 ACCTCACGTGCCGGTCAAGCAATAACCGTCAACATTCCAGATCTCTCATATCCAAGCATT 477
Query 475 TACCACGAATCCAAAGGTCTCACTAGG---AACAATTCAACGTGCCTCAACATCGCCGTC 531
||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| ||
Sbjct 478 TACCATGAATCCAAAGGTCTCACAAGGAACAACAACTCAACGTGCCTCAACATCGCTGTG 537
Query 532 ATCTCCTCCACGTTAGATCCACACGGGACTGTGAGATCCACGCGCCGCGCGAGGATCGTC 591
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 538 ATCTCCTCCACGTTAGATCCACACGGGACGGTTAGATCCACGCGCCGCGCGAGGATCGTC 597
Query 592 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 657
Query 652 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAGTCTTCA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAATCTTCA 717
Query 712 AGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 777
Query 772 GGAGGAAGATCTGAAAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTGCAACCG 831
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 GGAGGAAGATCTGAGAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTCCAACCG 837
Query 832 ATTTTAAGAATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAATTAGCG 891
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 838 ATTTTGAGGATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAGTTATCT 897
Query 892 GAGGCGGCGAATAAAGCTTGTCAGAGCTTGTATCTCCGATCTCTGCATGATATAAATCCG 951
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 GAGGCGGCGAATAAAGCTTGTCAGAGTTTGTATCTCCGATCTCTGCATGATATAAATCCG 957
Query 952 AAGGCGATTCTGGCTACCGGAAGTCTTCTCCGGCTCCGGGAGATGACTCTTGATCCCAAG 1011
||||||||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 958 AAGGCGATTTTGGCTACCGGAAGTCTTCTTCGGCTCCGTGAGATGGCTCTTGATCCCAAG 1017
Query 1012 AATCAAATAGATCACACTGAGATATCAAACGACACCGTTCTCTCTGTTTGA 1062
|||||||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1018 AATCAAATCGATCACACTGAGCTATCAAACGACACCGTTCTCTCCGTTTGA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5