BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489018
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21070.1 | Symbols: | unknown protein; Has 115 Blast hits t... 1578 0.0
> AT5G21070.1 | Symbols: | unknown protein; Has 115 Blast hits
to 115 proteins in 34 species: Archae - 1; Bacteria - 36; Metazoa
- 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes
- 18 (source: NCBI BLink). | chr5:7156173-7157775 FORWARD
LENGTH=1146
Length=1146
Score = 1578 bits (854), Expect = 0.0
Identities = 1016/1091 (93%), Gaps = 23/1091 (2%)
Strand=Plus/Plus
Query 1 CTCAGAACCTCAGATCTTTTTCTTAGAAGTCTCTCCCATGAAATCCGAGAAGATTCAAAT 60
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 CTCAGAACCTCAGATCTTATTCTTAGAAGTTTC-CCCATGAAATCCGAGAAGATTCAAAT 59
Query 61 GTAAATCCA-CCTTCCGATTCGTAGAATTTGCTTACCGGAGACTTCAGATCGAGCTACTG 119
|||||| || || |||||||| || | |||||| |||||| |||||||||||||||||||
Sbjct 60 GTAAATTCAGCC-TCCGATTCATATATTTTGCTCACCGGAAACTTCAGATCGAGCTACTG 118
Query 120 CAATTTGCGGATCGTG--------TTT-TTTCAATTCACGGTGTATTTTTCTCAGGAGAA 170
|||||||||||||||| ||| |||||||||||||||||||| |||| ||||||
Sbjct 119 CAATTTGCGGATCGTGTTTTTTTTTTTCTTTCAATTCACGGTGTATTTATCTCGGGAGAA 178
Query 171 GAAGAATGGACACTTTCACGGCGGAGGATCTATCGACGATCGGCGGAATAGCGACGGTAT 230
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 179 GAAGAATGGATACTTTCACGGCGGAGGATCTGTCGACGATCGGCGGAATAGCGACAGTAT 238
Query 231 CGCTCCTTCACTCGTTTATTCCGACGCATTGGTTACCTTTCTCCATCGTCGGACGTGCGC 290
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 CGCTCCTTCACTCGTTTATTCCGACGCATTGGCTACCTTTCTCCATCGTCGGACGTGCGC 298
Query 291 AGAAATGGACGCTTTCGAGAACCCTCTTCGTCACTGCACTTGGAGCAGTCCTGCATGTCA 350
|||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||| |
Sbjct 299 AGAAATGGACGCTTTCGAGAACACTCCTCGTCACTGCATTTGGAGCAGTCCTACATGTTA 358
Query 351 TATCCACTTCCCTTCTTGGTATAACAGCGATCACAATGGCGAATACCATCGCCAGTGAAG 410
|||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 359 TATCCACTTCTCTCCTTGGTATAACAGCAATCACAATGGCGAATACCATCGCTGGTGAAG 418
Query 411 AGACTGTTCACAAACTTGCTTCCCTTTTGCTTGTATTTCTCGGAGGAAGCTATGTCTTGC 470
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 419 AGACTGTTCACAAACTTGCTTCCCTTTTGCTTGTATTTCTCGGTGGAAGCTATGTTTTGC 478
Query 471 TGTTTTTGGCTGGTAAAGGTGGTCACACTCATTCTCATAACCAACCCATGGAGAAAATGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTTTTTGGCTGGTAAAGGTGGTCACACTCATTCTCATAACCAACCCATGGAGAAAATGG 538
Query 531 CTGTTGCTGGGCTTGTCCTTGTTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTT 590
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTGTTGCTGGACTTGTCCTTGTTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTT 598
Query 591 TCCTTGCTGTTGGAAATTCAAAGTCCATGATGGTTCTCGCCGTCATAGTTCTGCTGTTCA 650
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 599 TCCTCGCTGTTGGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCA 658
Query 651 GCACCATATTGGTGATGACATCGCTGGTGGCTCTATCCTTCTATGGTGCAAGCCAGCTCA 710
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 659 GCACCATATTGGTTATGACATCGCTGGTTGCTCTATCGTTCTATGGTGCAAGCCAGCTCA 718
Query 711 AGTTTCACTGGGTGGAGCGATATGACAAACTACTTGTTGGTTCGGTCCTGTGTCTGGTAG 770
||||||||||||||||||| || ||||||||||| |||||||| ||||||||| ||||||
Sbjct 719 AGTTTCACTGGGTGGAGCGGTACGACAAACTACTGGTTGGTTCAGTCCTGTGTTTGGTAG 778
Query 771 GTATCTTAACCCTTCTCTTCCATGATCATGACCATGGTGGTCATGAAGCACATCAACTCC 830
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 GTATCTTAACCCTTCTCTTCCATGATCATGACCATGGCGGTCATGAAGCACATCAACTCC 838
Query 831 ACAGGAAAATCATTACTCTCTAGAGACCGTTTCAAGTTTCTGTTTTGCCTGTCTGTCATG 890
||||||||||||||||||| |||| |||||||| ||| |||||||||||| |||||||||
Sbjct 839 ACAGGAAAATCATTACTCTTTAGATACCGTTTCGAGTCTCTGTTTTGCCTATCTGTCATG 898
Query 891 TCTGTTTGTTGTAGAGCGGCTTAAGGTCTATGAATCTTTCTGCTTCGCGTTGTATGTTTA 950
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 899 TCTGTTTGTTGTAGAGCGTCTTAAGGTCTATTAATCTTTCTGCTTCGCGTTGTATGTCTA 958
Query 951 TAA-TCAGTTGTAACGCTCTCTGTTGCACGTGAAGAAACATATGGAAGCATTAAATTCCT 1009
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TAACT-AGTTGTAACGCTCTCTGTTGCACGTGAAGAAACATATGGAAGCATTAAATTCCT 1017
Query 1010 TTAATAGAACAACTCTTTGGAGGTCCATTGTA-G-CT---A--TT--ACATGATTTTGTA 1060
| ||||||||||||||||||||||| | |||| | || | || |||| ||||||||
Sbjct 1018 TAAATAGAACAACTCTTTGGAGGTCTAGTGTAAGGCTTGTAGCTTTTACATAATTTTGTA 1077
Query 1061 GTTGTTCCGTT 1071
|||||||||||
Sbjct 1078 GTTGTTCCGTT 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5