BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489019
Length=3343
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21080.1 | Symbols: | Uncharacterized protein | chr5:715803... 4931 0.0
> AT5G21080.1 | Symbols: | Uncharacterized protein | chr5:7158035-7163188
REVERSE LENGTH=3360
Length=3360
Score = 4931 bits (2670), Expect = 0.0
Identities = 3161/3385 (93%), Gaps = 85/3385 (3%)
Strand=Plus/Plus
Query 1 GCaaaaaaaaaaaaaaaaaGAGTTTCTAAATATGGTTGATAAATAAAAACAT--AGAAAG 58
|||||||||||||||||||||||||| |||||||||| | || ||| | || | |||
Sbjct 19 GCAAAAAAAAAAAAAAAAAGAGTTTCAAAATATGGTT-TTGAA-AAACATATGAAAAAAC 76
Query 59 TTCCGCAATCATCTCCttttt-tttGCAAAACAAAACAGC-TCGTCGATTCTCTTCTCTT 116
||||||||| |||| |||||| ||| |||||||||||||| |||||||||||| | ||||
Sbjct 77 TTCCGCAATTATCT-CTTTTTCTTTACAAAACAAAACAGCTTCGTCGATTCTC-T-TCTT 133
Query 117 CTTCCTCAAATTCTCTTTCACA-TTTTCCAGATGGATCTCTCTTTTGATC-CTTCGTTAT 174
| |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||||
Sbjct 134 CCTCCTCAAATTCTCTTTCACATTTTTCCAGATGGATCTCTGTTTTGA-CTCTTCGTTAT 192
Query 175 CCCAACCATACATTGATTT--C-------ATGTTGTGTCTGTAAATCTCTCGTTTCCTAG 225
||||| ||||||||||||| | |||||||||||||||||||||||| | | |
Sbjct 193 CCCAATCATACATTGATTTCACGGTTATGATGTTGTGTCTGTAAATCTCTCGTAT-C-A- 249
Query 226 CTTGTTCGAATCTTGGCGTAAGAGAGAAAGATCGATGGGGGTCGTATCAAGAACCGTGTT 285
|||||||||| || ||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct 250 -TTGTTCGAATATTCGCGGAAGAGAGATAGATCGATGGGGGTTGTTTCAAGAACCGTGTT 308
Query 286 CCCTGTCTGCGAAAGCTTGTGTTGCTTTTGTCCGGCTTTGCGAGCCAGATCGAGACATCC 345
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CCCTGTATGTGAAAGCTTGTGTTGCTTTTGTCCGGCTTTGCGAGCCAGATCGAGACATCC 368
Query 346 CGTCAAGAGATATAAACATCTTCTCGCTGATATCTTCCCTCGATCCCAGGATGAGCAACC 405
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CGTCAAAAGATATAAACATCTTCTCGCTGATATCTTCCCTCGATCCCAGGATGAGCAACC 428
Query 406 TAATGATAGAAAAATCGGTAAATTATGCGAATATGCTGCGAAAAACCCTCTTCGTATCCC 465
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 TAATGATCGAAAAATCGGTAAATTATGCGAGTATGCTGCGAAAAACCCTCTTCGTATCCC 488
Query 466 TAAGATCACAACCTATCTCGAACAAAGGTGTTACAAGGAATTGAGAATGGAGCAATTTCA 525
|||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 489 TAAGATCACAACCTCTCTTGAACAAAGGTGTTACAAGGAATTGAGAATGGAACAATTTCA 548
Query 526 CTCTGTAAAGATTGTTATGTCTATCTACAAGAAGCTCTTGGTTTCATGTAATGAACAAAT 585
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 549 CTCTGTTAAGATTGTAATGTCTATCTACAAGAAGCTCTTGGTTTCCTGTAATGAACAAAT 608
Query 586 GTCGTTGTTTGCTAGTAGCTATCTTGGCCTCATTCATATTCTTCTAGATCAAAATAGGTA 645
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 609 GTTGTTGTTTGCTAGTAGCTACCTTGGTCTCATTCATATTCTTCTAGATCAAACTAGGTA 668
Query 646 TGATGAGATGCGCATCTTAGGTTGTGAAGCTCTCTATGATTTTGTTACCAATCAGGCAGA 705
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 669 TGATGAGATGCGCATTTTAGGTTGTGAAGCTCTCTATGATTTTGTTACCAGTCAGGCAGA 728
Query 706 GGGCACCTACATGTTTAACTTAGATGGATTGATCCCAAAAATCTGTCCTTTAGCTCATGA 765
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 729 GGGCACTTACATGTTTAACTTAGATGGGTTGATCCCAAAAATCTGTCCTTTAGCTCATGA 788
Query 766 ATTGGGAGAAGAAGAAAGGACAACTAATTTGTGTGCTGCTGGCCTCCAGGCCCTCTCCTC 825
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 789 ATTGGGAGAAGAAGATAGCACAACAAATTTGTGTGCTGCTGGCCTCCAGGCCCTCTCATC 848
Query 826 CATGGTTTGGTTTATGGGAGAATTTTCACATATATCAGTTGAATTTGACAATGTAGTCTC 885
| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 849 CTTGGTTTGGTTTATGGGAGAGTTTTCTCATATATCAGTTGAATTTGACAATGTAGTCTC 908
Query 886 TGTTGTCTTAGAAAATTATGGAGGCCTTAGTCAACCCTCCACTTCAGCAGTCAATGAAGA 945
|||||||||||||||||||||||||| ||||||| | |||||||| ||||||||| ||||
Sbjct 909 TGTTGTCTTAGAAAATTATGGAGGCCATAGTCAATCGTCCACTTCTGCAGTCAATCAAGA 968
Query 946 CAACAAGATTGCTTCTATTGATAAAGAACTATCTCCTGCGGAAGCTGAAACAAGAATTGC 1005
||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 969 CAACAAGGTTGCTTCCATTGATAAAGAGTTATCTCCTGCGGAAGCTGAAACAAGGATTGC 1028
Query 1006 TTCTTGGACAAGAATCGTGGATGACAGAGGCAAGGCAATTAGGGTAATTAACAG-GGAGG 1064
|||||||||||||||||||||||||||||||||||||||| || | | | | |||||
Sbjct 1029 TTCTTGGACAAGAATCGTGGATGACAGAGGCAAGGCAATT---GT-A-T--CTGTGGAGG 1081
Query 1065 ATGCTAAAAACCCCAAGTTTTGGTCGAGGGTTTGTCTGCATAATCTGGCAAAGTTAGCAA 1124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1082 ATGCTAAAAACCCCAAGTTTTGGTCGAGGGTTTGTCTGCATAATCTGGCAAAGTTAGCTA 1141
Query 1125 AAGAAGCAACAACTGTGCGACGTGTACTCGAGTCACTCTTTCGTTATTTTGATTTTAATG 1184
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1142 AAGAAGCAACAACTGTGCGACGTGTTCTCGAGTCACTCTTCCGTTATTTTGATTTTAATG 1201
Query 1185 AAGTTTGGTCCACAGAGAACGGTCTTGCTTTATATGTGCTTCAGGACGTTCAGTTGCTGA 1244
|||| |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1202 AAGTGTGGTCCACCGAGAACGGTCTTGCTGTATATGTGCTGCAGGACGTTCAGTTGCTGA 1261
Query 1245 TAGAAAGATCT--G--------G--TTT-GTATTGTC--TCC--AT-TTGCATCTTGATC 1286
| ||||||||| | | ||| | ||||| ||| || |||||||||||
Sbjct 1262 TCGAAAGATCTGGGCAAAACACGCATTTCCTGTTGTCTATCCTGATCAAGCATCTTGATC 1321
Query 1287 ACAAGAATGTTTTAAAGAAGCCTAGAATGCAACTTGATATAGTGTATGTTGCTACTGCAC 1346
||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1322 ACAAGAATGTTCTAAAGAAGCCTAGAATGCAACTTGAAATAGTTTATGTTGCTACTGCAC 1381
Query 1347 TTGCTCAACAGACTAAAGTTCTTCCATCTGTGGCAATCATTGGTGCCCTGAGTGATATGA 1406
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1382 TTGCCCAACAGACTAAAGTTCTGCCATCCGTGGCAATCATTGGTGCCCTGAGTGATATGA 1441
Query 1407 TTAGGCATCTAAGGAAGAGCATCCATTGTTCATTAGATGATTCGAATCTAGGGAATGAGA 1466
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TTAGGCATCTGAGGAAGAGCATCCATTGTTCATTAGATGATTCGAATCTAGGGAATGAGA 1501
Query 1467 TGATTCAGTATAACCTGAAATTCGAAGCTGCT-GTTGAACAATGCCTCGTGCAATTATCC 1525
|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 1502 TGATTCAGTATAACCTGAAATTCGAAGCTG-TAGTTGAACAATGCCTCCTGCAATTATCC 1560
Query 1526 CAAAAGGTAGGAGATGCAGGTCCTATTCTTGACATAATGGCTGTCATGTTGGAAAGCATG 1585
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1561 CAAAAGGTAGGAGATGCAGGTCCTATCCTTGACATAATGGCTGTCATGTTGGAAAGCATG 1620
Query 1586 TCAAATATTACAGTCATGGCAAGAACCTTAATCGCCGCTGTTTTCCGCACAGCACAAATT 1645
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1621 TCAAATATTACAGTCATGGCAAGAACCCTAATCGCCGCAGTTTTCCGTACAGCACAAATT 1680
Query 1646 ATAGCAGCTATACCAAATTTATCATATGAAAACAAGGCAAGTTGCTTAAATCTTGAAGCT 1705
|||||||||||||||||||||||||||| || || | || | |||
Sbjct 1681 ATAGCAGCTATACCAAATTTATCATATG-----AA---AA----C---AA----G--GCT 1719
Query 1706 TTTCCAGATGCACTTTTCCATCAACTGCTTCAAGCTATGGTCTGTGCTGACCATGAATCG 1765
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 TTTCCAGATGCACTTTTTCATCAACTGCTTCAAGCTATGGTCTGTGCTGACCATGAATCG 1779
Query 1766 AGGATGGGGGCTCACCGTATATTTTCTGTTGTTCTGGTCCCATCTTCTGTTTCTCCAAGT 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 AGGATGGGGGCTCACCGTATATTTTCTGTTGTTCTGGTCCCATCTTCTGTTTCTCCAAGT 1839
Query 1826 TCAGTTCCCAACTCTAGAAGACCTGCTGATATGCAGAGGACATTGTCAAGAACTGTGTCT 1885
||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1840 TCAGTTCTCAACTCCAGAAGACCTGCTGATATGCAGAGGACACTGTCAAGAACTGTGTCT 1899
Query 1886 GTGTTTTCTTCTTCAGCTGCACTCTTTAGAAAACTGAAGTTGGAGTCAGATAATTCTGTT 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 GTGTTTTCTTCTTCAGCTGCACTCTTTAGAAAACTGAAGTTGGAGTCAGATAATTCTGTT 1959
Query 1946 GATGATACTGCGAAGATTGAGAGAGTTTCAACACTTAGCAGGTCAACTTCAATATTCACA 2005
||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 1960 GATGATACTGCAAAGATGGAGAGAGTTTCAACACTTAGCAGGTCAACGTCAAAATTCATA 2019
Query 2006 AGAGGTGAAAGTTTTGACGACGAAGAGCCAAAGAACAATACTAGCTCAGTACTGAGCCGG 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 AGAGGTGAAAGTTTTGACGACGAAGAGCCAAAGAACAATACTAGCTCAGTACTGAGCCGG 2079
Query 2066 TTAAAGTCAAGTTACAGCCGATCTCAGAGTGTGAAAAGGAACCCGTCTTCGATGGT-GTC 2124
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 2080 TTAAAGTCAAGTTACAGCCGATCTCAGAGTGTGAAAAGAAACCCGTCTTCAATGGTAG-C 2138
Query 2125 AGATCAGAATTCTTCTGGAAGTTCACCAGAGAAACCAGTGATACCTTTAAGATTAAGCAG 2184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2139 AGATCAGAATTCTTCTGGAAGTTCACCAGAGAAACCAGTGATACCCTTAAGATTAAGCAG 2198
Query 2185 CCACCAAATTTGCCTTTTGCTTTCATCGATTTGGGTGCAGTCTTTATCTCCTCACAACAT 2244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 CCACCAAATTTGCCTTTTGCTTTCATCGATTTGGGTGCAGTCTTTATCTCCTCACAACAT 2258
Query 2245 GCCACAAAATTATGAAGCCATTGCTAATACATTTAGCTTAGTACTTCTATTTGGCCGGAC 2304
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2259 GCCACAAAATTATGAAGCCATTGCTAATACATTTAGCTTAGTACTTCTCTTCGGCCGGAC 2318
Query 2305 TAAGCACTCTAGCAATGAAGTCTTGGTCTGGAGCTTTCAGCTAGCATTTTCTTTGCGGAA 2364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2319 TAAGCACTCTAGCAATGAAGTCTTGGTCTGGAGCTTTCAGCTAGCATTTTCTTTGCGTAA 2378
Query 2365 TCTCTCTCTTGGAGGACCGTTGCAGCCATCACGGCGTAGATCCCTCTTTACTCTGGCTAC 2424
||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 2379 TCTGTCTCTTGGAGGACCCTTGCAGCCATCACGGCGTAGATCCCTCTTTACTTTGGCTAC 2438
Query 2425 ATCCATGATTATTTTCTCAGCAAAAGCCTTCAACATCCCTCCTCTTGTTAATAGCGCAAA 2484
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2439 ATCGATGATCATTTTCTCAGCGAAAGCCTTCAACATCCCTCCTCTTGTTAATAGCGCAAA 2498
Query 2485 AACCTCACTACAGGAAAAAACGGTAGACCCGTTTCTTCAATTGGTGGAAGATTGCAAGCT 2544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2499 AACCTCACTACAGGAAAAAACGGTAGACCCGTTTCTTCAATTGGTGGAAGATTGCAAGCT 2558
Query 2545 AGATGCTGTTTTCTATGGACAAGCAGAGCAACCAGCAAAGAATTATGGATCAAAAGAAGA 2604
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2559 AGATGCTGTTTTCTATGGACAAGCAGACCAACCAGCAAAGAATTATGGATCAAAAGAAGA 2618
Query 2605 CGATGATGACGCCTTACA-G-TCACTTTTTGTGATAGAAGAAACTACACAAAATCAACCT 2662
|||||| |||| ||| || | |||||| | |||||||||| || ||||||||||| ||
Sbjct 2619 CGATGACGACG-CTT-CACGTTCACTTGTCACGATAGAAGAAGCTTCACAAAATCAATCT 2676
Query 2663 CGAGAGCATTACGCTTCCATGATAATGAAGTTTCTGGGAAAACTATCAGATCAAGAATCA 2722
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2677 CGAGAGCACTACGCTTCCATGATAATGAAGTTTTTGGGAAAACTATCAGATCAAGAATCG 2736
Query 2723 ACGGCTATAAAGGAGCAGCTAGTTTCAGATTTTATACCTATCGATGGCTGTCCTGTTGGA 2782
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2737 TCGGCTATAAAGGAGCAGCTAGTTTCAGACTTTATACCTATCGATGGCTGTCCAGTTGGA 2796
Query 2783 ACGCAGTTGACAGAATCTCCAGTTCAAGTTTACCGTTCTGAAGaaaaaaaCAACAAACCT 2842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2797 ACGCAGTTGACAGAATCTCCAGTTCAAGTTTACCGTTCTGAAGAAAAAAACAACAAACCT 2856
Query 2843 CGAGAAAATGCTGAAACTCAATTGCTTATACCGGAGAATGATGCAGTGCCGAGTCCTCCA 2902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2857 CGAGAAAATGCTGAAACTCAATTGCTTATACCGGAGAATGATGCAGTGCCGAGTCCTCCA 2916
Query 2903 GAAGAACA-TCTTGGTCTTGACACACAACCTAATGCCAAAACCGCATTTCTTCTGAGCAT 2961
|||||||| | || ||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 2917 GAAGAACAGT-TTAGTCTTGACATACAACCTAATGCTAAAACTGCATTTCTTCTGAGCAT 2975
Query 2962 CGATGAACTTCTAAATGCAGTGTCTCAGACAACAGCACAATTAGGGAGATACTCAGTGTC 3021
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2976 TGATGAACTTCTAAATGCAGTGTCTCAGACAACAGCACAATTAGGGAGATACTCAGTGTC 3035
Query 3022 TGATCCACCAGACATGACATACACAGAAATGGCAGGACATTGTGAGGCTCTTCTCATGGG 3081
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 3036 TGATCCACCAGACATGACATACACAGAAATGGCAGGTCATTGCGAGGCTCTTCTCATGGG 3095
Query 3082 AAAGCAAGAGAAGATGTCTTTCATGTCTGCAAAAAGCAACAAATT---CAGCAGCCAAAC 3138
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 3096 AAAGCAAGAGAAGATGTCTTTCATGTCTGCCAAAAGCAACAAATTTAGCAGCAGCCAAAC 3155
Query 3139 CAAGGAAGCTACTGCTTTGCCTTGTAGTGGTGGGAATCCGTTTGTGGAGCAGCGGAGCTC 3198
|||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 3156 CAAGGAAGCTGTTGCTTTGCCTTGCAGTGGTGGGAACCCGTTTGTGGACCAGCGGAGCTC 3215
Query 3199 GTGGGAGATGATGGGTTTGGGTGCACCGGCGGCTTCAAATATGTGCGTCACAGAGTATCA 3258
||||||||||||||| || |||||||| |||||||||||||| || ||||||||||||||
Sbjct 3216 GTGGGAGATGATGGGATTAGGTGCACCCGCGGCTTCAAATATCTGTGTCACAGAGTATCA 3275
Query 3259 AAACCATCCTCCTTTCTTCAATCCTCCTGCCTCTACTCCTTTTGACAACTTCCTTAAAGC 3318
||| || ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 3276 AAATCAGCCTCCTTTCTTCAATCCTCCTTCCTCTACTCCTTTCGACAACTTCCTTACAGC 3335
Query 3319 CAAGCCGTTGGTTCCTCTTGATTAG 3343
|||||||||||||||||||||||||
Sbjct 3336 CAAGCCGTTGGTTCCTCTTGATTAG 3360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166353582988
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5