BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489021
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21105.1 | Symbols: | Plant L-ascorbate oxidase | chr5:7172... 2710 0.0
AT5G21100.1 | Symbols: | Plant L-ascorbate oxidase | chr5:7168... 987 0.0
> AT5G21105.1 | Symbols: | Plant L-ascorbate oxidase | chr5:7172687-7177841
FORWARD LENGTH=2239
Length=2239
Score = 2710 bits (1467), Expect = 0.0
Identities = 1718/1836 (94%), Gaps = 30/1836 (2%)
Strand=Plus/Plus
Query 1 ATGGTTGTGTGGTGGATA--G-TGGTGGTGGCTGTCTTGACTCACACGGCGTCTGCCACC 57
|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 89 ATGGGTGTGTGGTGGATAGTGCTGGTGGTGGCTGTCTTGACTCACACGGCGTCTGCCGCC 148
Query 58 GTGAGAGAGTATGATTGGGAGGTTGAGTACAAGTTTTGG-CAGCCGGACTGCAAAGAAGG 116
|||||||| ||| |||||||||| |||||||||| |||| | ||||||||||||||| ||
Sbjct 149 GTGAGAGAATATCATTGGGAGGTGGAGTACAAGTATTGGTC-GCCGGACTGCAAAGAGGG 207
Query 117 TGCCGTCATGACCATCAACGGCCAGTTTCCTGGCCCCACCATAAAAGCCGTCGCCGGAGA 176
||||| |||||| |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 208 CGCCGTTATGACCGTCAACGGCGAGTTTCCTGGTCCCACCATAAAAGCCTTCGCCGGAGA 267
Query 177 CACCATCGTCGTTC-ATCTCACGAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGC 235
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 268 CACCATCGTCG-TCAATCTCACCAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGC 326
Query 236 ATGGAATCCGTCAGTTGGGAAGTCCATGGGCAGATGGAGCAGCAGGAGTTACCCAATGTG 295
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 327 ATGGAATCCGTCAGTTCGGAAGTCCATGGGCAGATGGAGCAGCAGGAGTTACTCAATGCG 386
Query 296 CCATTAATCCTGGAGAGACGTTTACCTACAAATTCACTGTTGAGAAGCCGGGAACACATT 355
| ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 387 CAATTAACCCTGGAGAGACTTTTACCTACAATTTCACTGTTGAAAAGCCGGGAACACATT 446
Query 356 TCTACCATGGACACTACGGCATGCAGAGATCAGCTGGGCTATACGGATCGTTGATTGTGG 415
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TCTACCATGGACACTATGGCATGCAGAGATCAGCTGGGCTATACGGATCGTTGATTGTGG 506
Query 416 ACGTGGCTAAAGGACAGAGAGAGAGGTTGAGATACGATGGTGAGTTTAATCTCTTACTAA 475
|||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 507 ACGTGGCTAAAGGAAAGAGCGAGAGATTGAGATACGATGGTGAGTTTAATCTCTTACTCA 566
Query 476 GTGACTGGTGGCATGAGCCTATTCCTTCCCAAGAACTCGGTCTTTCTTCCAAACCTATGC 535
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 567 GTGACTGGTGGCATGAGGCTATTCCCTCCCAAGAACTCGGTCTTTCTTCCAAACCTATGC 626
Query 536 GCTGGATCGGTGAAGCTCAGAGCATATTGATAAATGGAAGGGGACAATTCAATTGTTCAT 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 GCTGGATCGGTGAAGCTCAGAGCATATTGATAAATGGGAGGGGACAATTCAATTGTTCAT 686
Query 596 TGGCGGCGCAATTTAGCAACA-CA--TCATTACCAATGTGCACGTTTAAAGAAGGTGATC 652
| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 687 TAGCGGCGCAATTTAGCAACAACACATCATTACCAATGTGCACGTTTAAAGAAGGTGATC 746
Query 653 AGTGTGCACCACAGAAACTCAACGTGGAGCCTAACAAGACTTACCGAATCAGACTCGCCA 712
|||| || ||||||| |||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 747 AGTGCGCCCCACAGATACTCCACGTGGAGCCGAACAAGACTTACCGAATCAGACTCTCCA 806
Query 713 GCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGGGACACAAGCTAGTGGTGGTAG 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 807 GCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGGGACACAAGCTAGTGGTGGTCG 866
Query 773 AAGCCGACGGCAACTACATTACGCCGTTCATC-ACCGACGATATCGACATATACTCCGGC 831
||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 867 AAGCCGACGGCAACTACATAACGCCGTTCA-CGACCGACGATATCGACATATACTCCGGC 925
Query 832 GAGAGCTATTCTGTTCTTCTCACCACCGATCAAGACCCATCACAAAACTACTACATCTCC 891
|| ||||| || || ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 926 GAAAGCTACTCCGTCCTTCTCACCACCGATCAAGACCCTTCACAAAACTATTACATCTCC 985
Query 892 GTCGGCGTCCGTGGTCGGAAACCAAACACAACACAAGCACTCTCCAT-TCTAAATTACGT 950
|||||||||||||| ||||||||||||||||| || |||||| | || | ||||||||||
Sbjct 986 GTCGGCGTCCGTGGCCGGAAACCAAACACAACTCAGGCACTCACTATAT-TAAATTACGT 1044
Query 951 AACTGCCCCTGCTTCAAAACTCCCTTCTTCTCCTCCGCCGGTGACTCCACGGTGGGACGA 1010
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1045 AACTGCCCCTGCTTCAAAACTCCCTTCTTCTCCTCCACCGGTGACTCCACGGTGGGACGA 1104
Query 1011 TTTCGAACGAAGCAAAAATTTCTCCAAGAAGATCTTCTCAGCGATGGGATCTCCATCGCC 1070
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1105 TTTCGAACGAAGCAAAAATTTCTCTAAGAAGATCTTCTCAGCGATGGGATCACCATCGCC 1164
Query 1071 GCCGAAGAAATACAGAAAACGGTTGATTCTTCTCAACACTCAGAATCTAATCGACGGATA 1130
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1165 GCCGAAGAAATACAGAAAACGGTTGATTCTTCTCAACACACAGAATCTAATCGACGGATA 1224
Query 1131 CACGAAATGGGCTATTAACAATGTCTCTCTAGTGACTCCGGCAACGCCATATCTCGGTTC 1190
|||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1225 CACGAAATGGGCGATCAACAACGTCTCTCTAGTGACTCCGGCAACGCCGTATCTCGGTTC 1284
Query 1191 GGTTAAATACAATTTGAAACTCGGGTTTAACCGGAAATCGCCGCCGAGGAGTTACCGTAT 1250
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1285 GGTTAAATACAACTTGAAACTCGGATTTAACCGGAAATCGCCGCCGAGGAGTTACCGTAT 1344
Query 1251 GGATTACGACATTATGAATCCACCGCCGTTTCCTAACACCACTACAGGAAACGGGATTTA 1310
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1345 GGATTACGATATTATGAATCCACCGCCGTTTCCTAACACCACTACAGGAAACGGAATATA 1404
Query 1311 CGTTTTCCCGTTTAATGTAACGGTCGACGTGATTATCCAAAACGCAAACGTTTTAAAAGG 1370
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1405 CGTTTTCCCGTTTAATGTAACGGTCGACGTGATTATCCAAAACGCTAACGTTTTAAAAGG 1464
Query 1371 TGTAGTCAGTGAGATTCATCCATGGCATCTTCACGGTCACGACTTCTGGGTTTTGGGTTA 1430
| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1465 TATTGTTAGTGAGATTCATCCATGGCATCTTCACGGTCACGATTTCTGGGTTTTGGGTTA 1524
Query 1431 CGGTGATGGAAAATTTAAACCGGGAATTGATGAGAAGACGTATAATTTGAAGAACCCGCC 1490
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1525 CGGTGACGGGAAATTTAAACCGGGAATTGATGAGAAGACGTATAATTTGAAGAATCCGCC 1584
Query 1491 ATTACGGAATACGGCGATTTTGTATCCGTATGGATGGACGGCGTTAAGGTTTGTAACGGA 1550
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1585 GTTACGGAATACGGCGATTTTGTATCCGTATGGATGGACGGCGATAAGGTTTGTGACGGA 1644
Query 1551 TAATCCAGGGGTTTGGTTTTTTCATTGCCATATTGAACCGCATTTGCATATGGGTATGGG 1610
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1645 TAATCCAGGGGTTTGGTTTTTTCATTGTCACATTGAACCGCATTTGCATATGGGAATGGG 1704
Query 1611 TGTGGTTTTCGCGGAGGGATTGAACCGGATTGGTAAGATACCTGATGAGGCGTTGGGTTG 1670
||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 1705 TGTGGTTTTCGCGGAGGGATTAAACCGTATTGGTAAGGTACCTGATGAGGCGTTGGGTTG 1764
Query 1671 TGGTTTAACCAAGCAATTCCTCATGAACCGGAACC--A-TA-ATT-A--A---T--GACG 1718
|||||||||||||||||| |||||||||||||||| | | ||| | | | ||||
Sbjct 1765 TGGTTTAACCAAGCAATTTCTCATGAACCGGAACCGCAATTGATTTAGTAAGGTATGACG 1824
Query 1719 GCATTTGAGTGTGTGCTTTTCTGTTTTG-G-TTGTGTTCCGTATATTGTAAACCGAAGAT 1776
||||||||||||| ||||| ||||||| | |||||||| |||| |||| ||||||||||
Sbjct 1825 GCATTTGAGTGTG--CTTTTTTGTTTTGTGGTTGTGTTCGGTATGTTGTCAACCGAAGAT 1882
Query 1777 TGGTTCATGTTATTGGTATAGTTGGTAAGTCGGTTA 1812
|||||||||||||||||||||||||| ||| |||||
Sbjct 1883 TGGTTCATGTTATTGGTATAGTTGGTTAGTTGGTTA 1918
> AT5G21100.1 | Symbols: | Plant L-ascorbate oxidase | chr5:7168184-7170928
FORWARD LENGTH=2059
Length=2059
Score = 987 bits (534), Expect = 0.0
Identities = 1316/1681 (78%), Gaps = 104/1681 (6%)
Strand=Plus/Plus
Query 73 TGGGAGGTTGAGTACAAGTTTTGGCAGCCGGACTGCAAAGAAGGTGCCGTCATGACCATC 132
|||||||||||||| |||| ||| |||||| || |||||||| ||| ||| |||||
Sbjct 210 TGGGAGGTTGAGTATAAGTACTGGTGGCCGGATTGTAAAGAAGGAATCGTTATGGCCATC 269
Query 133 AACGGCCAGTTTCCTGGCCCCACCATAAAAGCCGTCGCCGGAGACACCATCGTCGTTCAT 192
|||||||||||||| || || || ||| | || |||||||||||||| || | | ||
Sbjct 270 AACGGCCAGTTTCCAGGGCCAACGATAGACGCAGTCGCCGGAGACACGGTCATTATCCA- 328
Query 193 C-TC-ACGAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGCATGGAATCCGTCAG- 249
| || | ||||||||| |||||||||| |||| ||||||||||| || || ||||||
Sbjct 329 CGTCGTC-AACAAACTCTCCACCGAAGGTGTTGTTATCCATTGGCACGGCATACGTCAGA 387
Query 250 TTGGGAAGTCCATGGGCAGATGGAGCAGCAGGAGTTACCCAATGTGCC-ATTAATCCTGG 308
||| | ||||||||| |||||||||||||| || ||||| ||| || |||||||||||
Sbjct 388 AAGGG-ACTCCATGGGCTGATGGAGCAGCAGGTGTGACCCAGTGT-CCTATTAATCCTGG 445
Query 309 AGAGACGTTT-ACCTACAAATTCACTGTTGAGAAGCCGGGAACACATTTCTACCATGGAC 367
||||| ||| || ||||| |||| ||| || ||| ||||||||||||||||||||||||
Sbjct 446 CGAGAC-TTTCACTTACAAGTTCATTGTCGATAAGGCGGGAACACATTTCTACCATGGAC 504
Query 368 ACTACGGCATGCAGAGATCAGCTGGG-CTATACGG-ATCGTTGATTGTGGACGTGGCTAA 425
||||||| ||||| |||||| | ||| |||||||| || ||| || || | | |
Sbjct 505 ACTACGGAATGCAAAGATCATC-GGGACTATACGGAAT-GTTAATAGT--A---AGAT-C 556
Query 426 AGGACAGAGAGAGAGGTTGAGATACGATGGTGAGTTTAATCTCTTACTAAGTGACTGGTG 485
| || | ||||||||| | |||||||| ||||| |||||||| || |||||||||||
Sbjct 557 A--CCA-AAAGAGAGGTTAATTTACGATGGAGAGTTCAATCTCTTGCTCAGTGACTGGTG 613
Query 486 GCA--TGAGCCTATTC-CTTCCCAAGAACTCGGTCTTTCTTC-CAAACCTATGCGCTGGA 541
||| || | |||| | | |||||||||| ||||||||| | |||||||| ||||
Sbjct 614 GCACCAAAG-C-ATTCAC-GCGCAAGAACTCGCTCTTTCTTCTC-GTCCTATGCGTTGGA 669
Query 542 TCGGTGAAGCTCAGAGCATATTGATAAATGGAAGGGGACAATTCAATTGTTCATTGGCGG 601
|||||||| |||| ||| | ||||| |||||||| ||||| |||||||||||| || |
Sbjct 670 TCGGTGAACCTCAAAGCTTGTTGATCAATGGAAGAGGACAGTTCAATTGTTCACAAGCAG 729
Query 602 CGCAATTTAGCAACA-CATCATTA-CCA-ATG--TGCACGTTTAAAGAAGGTGATCAGTG 656
|| | |||| ||| | | | | | ||| ||||||||||||||| |||||||||
Sbjct 730 CGTATTTTAACAA-AGGAGGA-GAGAAAGATGTATGCACGTTTAAAGAAAATGATCAGTG 787
Query 657 TGCACCACAGAAACTCAAC--GTGGAGCCTAACAAGACT-TACCG-AATCAGACTCGCCA 712
|||||| | |||||| | || || || || ||| | ||||| || || |||| |
Sbjct 788 TGCACCTC--AAACTCTTCGAGTCGAACCCAA-TAGAGTGTACCGTCTTC-GAATCGCTA 843
Query 713 GCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGGGACACAAGCTAGTGGTGGTAG 772
|||| || |||||||| |||||||||||||||||||| |||||| |||| ||||| || |
Sbjct 844 GCACAACTGCTCTTGCTTCCCTCAACTTGGCTGTTCAAGGACACCAGCTGGTGGTTGTTG 903
Query 773 AAGCCGACGGCAACTACATTACGCCGTTCATCACCGACGATATCGACATATACTCCGGCG 832
|||| |||||||||||| | | ||||||| | | |||| || ||| | || |||||||
Sbjct 904 AAGCTGACGGCAACTACGTCGCACCGTTCACCGTCAACGACATTGACGTTTATTCCGGCG 963
Query 833 AGAGC-TATTCTGTTCTTCTCACCACCGATCAAG-AC--CCATCACAA-AACTACTACAT 887
| | | ||||||||||| || | ||| | | | || |||||| || || |||| ||
Sbjct 964 A-AACTTATTCTGTTCTCCTTAAAACC-A--ACGCACTTCCATCA-AAGAAGTACTGGAT 1018
Query 888 CTCCGTCGGCGTCCGTGGTCG-GAAACCAAACACAACACAAGCACTCTCCATTCTAAATT 946
|||||||||||| ||||| || ||| ||||| || | ||||||||| || | ||||||
Sbjct 1019 CTCCGTCGGCGTTCGTGGCCGAGAACCCAAA-ACTCCTCAAGCACTCACCGTGATAAATT 1077
Query 947 ACG-TAACTGCCCCTGCTTCAAAACTCCCTTCTTC-TCCTCCGCCGGTGACTCCACGGTG 1004
||| | | |||| ||| || || ||| || || ||| || |||||||||||| ||
Sbjct 1078 ACGTTGA-TGCCACTGAGTC---ACGCCCATC-TCATCCACCACCGGTGACTCCAATCTG 1132
Query 1005 GGACGATTTC-GAACGAAGCAAAAATTTCTCCAAGAAGATCTTCTCAGCGATGGGATCTC 1063
| |||| | || || ||||||| ||||| |||||||||||| | || | |||| ||
Sbjct 1133 GAACGA-CACAGATCGGAGCAAAAGCTTCTCGAAGAAGATCTTCGCCGCTAAAGGATATC 1191
Query 1064 CATCGCCGCCGAAGAAATACAGA-AAACGGTTGATTCTTCTCAACACTCAGAATCTAAT- 1121
|| |||||| |||||| || | | | | | || || |||||||| |||||||| |
Sbjct 1192 CAAAACCGCCGGAGAAAT-CACATGACCAGCTAATCCTCCTCAACACACAGAATCT-CTA 1249
Query 1122 CGACGGA-TACACGAAATGGGCTATTAACAATGTCTC-TCTAGTGAC-T-CCGGCAACGC 1177
||| || |||||||||||| | || ||||| ||||| | || | | | |||| ||||
Sbjct 1250 CGA-AGATTACACGAAATGGTCAATCAACAACGTCTCAT-TA-T-CCGTACCGGTGACGC 1305
Query 1178 CATATCTCGGTTCGGTTAAATACAATTTGAAACTCGG-GTTTAACCGGAAATCGCCGCCG 1236
| || ||||| || ||| |||| ||| ||| |||| || | |||||||||| ||
Sbjct 1306 CGTACCTCGGATCAATTAGATACGGTTT-AAAATCGGCGTACGATTTGAAATCGCCGGCG 1364
Query 1237 -AGGAGTTACCGTATGG---ATTACGACATTATGAATCCACCGCCGTTTCCTAACACCAC 1292
|| ||||| ||||| ||||||| || ||||| || |||||| ||| ||||| ||
Sbjct 1365 AAGAAGTTA-ATTATGGATAATTACGATATCATGAAACCGCCGCCGAATCCAAACACAAC 1423
Query 1293 TACAGGAAACGGGATTTACGTTTTCCCGTTT--AAT-GTAACGGTCGACGTGATTATCCA 1349
| ||| | |||||||||| |||| ||||| ||| || | |||||||||||| | ||
Sbjct 1424 GAAAGGTAGCGGGATTTACAATTTCGCGTTTGGAATCGT--C-GTCGACGTGATTCTTCA 1480
Query 1350 AAACGCAAACGTTTTAAAAGGTGTAG-TCAGTGAGATTCATCCATGGCATCTTCACGGTC 1408
|||||| || |||||||||||||| | | |||||||||||||| |||||| |||| ||||
Sbjct 1481 AAACGCTAATGTTTTAAAAGGTGT-GATTAGTGAGATTCATCCGTGGCATATTCATGGTC 1539
Query 1409 ACGACTTCTGGGTTTTGGGTTACGGTGATGGAAAATTTAAACCGGGAATTGATGAGAAGA 1468
| || ||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1540 ATGATTTCTGGGTTTTGGGTTACGGTGAAGGGAAATTTAAACCGGGGATTGATGAGAAGA 1599
Query 1469 CGTATAATTTGAAGAACCCGCCATTACGGAATACGGCGATTTTGTATCCGTATGGATGGA 1528
||| |||||||||||| ||||| ||||||||||||| | | |||||||||| ||||||||
Sbjct 1600 CGTTTAATTTGAAGAATCCGCCGTTACGGAATACGGTGGTGTTGTATCCGTTTGGATGGA 1659
Query 1529 CGGCGTTAAGGTTTGTAACGGATAATCCAGGGGTTTGGTTTTTTCATTGCCATATTGAAC 1588
||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1660 CGGCGATAAGGTTTGTGACGGATAATCCAGGGGTTTGGTTTTTTCATTGTCATATTGAAC 1719
Query 1589 CGCATTTGCATATGGGTATGGGTGTGGTTTTCGCGGAGGGATT-GAACCGGATTGGTAAG 1647
||||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||
Sbjct 1720 CGCATTTGCATATGGGTATGGGTGTGGTTTTCGTGGAGGGAGTAGA-CCGGATTGGTAAG 1778
Query 1648 AT--A----CCTGATGAGGCG-TTGGGTTGTGGTTTAACCAAGCAATTCCTCATGAACCG 1700
|| | || ||||| ||| |||| |||||| ||||||| | ||| || ||||||||
Sbjct 1779 ATGGAGATACCGGATGAAGCGCTTGG-TTGTGGATTAACCAGGAAATGGCTTATGAACCG 1837
Query 1701 G 1701
|
Sbjct 1838 G 1838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95581837680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5