BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489023
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21130.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1188 0.0
> AT5G21130.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:7185915-7186919
FORWARD LENGTH=1005
Length=1005
Score = 1188 bits (643), Expect = 0.0
Identities = 859/961 (89%), Gaps = 24/961 (2%)
Strand=Plus/Plus
Query 1 AAAATGACCGTCGAGAAACCAAAAGAAATGACCGGCGATACCAACTCCGGCGAATTTGTA 60
|||||||| |||||||||||| ||||||||||||||||||| ||||||| || ||| ||
Sbjct 51 AAAATGACGGTCGAGAAACCACAAGAAATGACCGGCGATACAAACTCCGACGGATTCCTA 110
Query 61 ACTAACAAAGACGTCCACAGAATAAAGCATCTATCGATAGATACCAACGATAGTTCTTCG 120
|||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 111 ACTAACAAAGACGTTCACAGAATAAAGCATCCATCGCTAGATACCAACGATAGTTCCTCC 170
Query 121 AGCCGATACTCCGTCGATTCTCAAAAACCAAGAATCGGACCACCGCCTGGGACTTACATC 180
||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||
Sbjct 171 AGCCGATACTCCGTCGATTCTCAGAAATCAAGAATAGGACCACCGCCTGGGACTTACGTC 230
Query 181 ATCAACCTCCCTAAGGATCAGATCTACCGCGTTCCCCCGCCGGAAAATGCTCACCGTTAC 240
||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 231 ATCAAACTCCCTAAGGATCAGATCTACCGTGTTCCTCCACCGGAAAATGCTCACCGTTAC 290
Query 241 GAGTATCTCTCTCGCCGGAAAACAAATC-AATCGAATTGCCGGCGATGTTTCTGTC-ATT 298
|||||||||||||||||||||||||| | ||||| ||||||||||||||| || | |||
Sbjct 291 GAGTATCTCTCTCGCCGGAAAACAAA-CAAATCGTGTTGCCGGCGATGTTTATG-CTATT 348
Query 299 TCCTCGCTGCTTTACTTATCCTTCTCTTCCTCGCAGCTCTCGTCGTCGGAATCCTT-TAC 357
|||| |||||||||| ||| || || |||||||||| | | | |||| || ||| |||
Sbjct 349 CCCTCTCTGCTTTACTCATCATTATCGTCCTCGCAGCGATTGCCTTCGG-ATTCTTCTAC 407
Query 358 CTCGTTTACCAGCCGCATAAGCCA-AGATTCTCCGTGAGTGGAGTCTCCGTCACCGGAAT 416
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 408 CTCGTTTACCAGCCGCATAAGCCACAG-TTCTCCGTGAGTGGAGTCTCCGTCACCGGAAT 466
Query 417 CAATCTGACGTCATCTTCTCCATTATCTCCGGTGATCGGAATCAAGGTGCAG-TCTCAGA 475
||| ||||||||||||||||| || |||||||||||| |||||||| ||| | |||||||
Sbjct 467 CAACCTGACGTCATCTTCTCCGTTTTCTCCGGTGATCAGAATCAAGTTGC-GATCTCAGA 525
Query 476 ACGTTAACGGTAAACTCGGTTTGATCTACGAGAAAGGAAATGAGGCTGAC--GTTTTTTA 533
||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 526 ACGTTAAAGGTAAACTCGGTTTGATATACGAGAAAGGAAATGAGGCTGACGTGTTTTTTA 585
Query 534 CGGCGGAATCAAACTTGGTAACGGTAAGTTCACGGCGTTTAAGCAGCCGGCGGATAATGT 593
||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 586 --ACGGAACCAAACTTGGGAACGGCGAGTTCACGGCGTTTAAGCAGCCGGCGGGTAATGT 643
Query 594 GACGGTGATCGTGACGGTGTTAAAGGGATCGAGTATTCAGTTAACGAGCTCGTCGCGTAA 653
||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 644 AACGGTGATCGTGACGGTGTTAAAGGGATCGAGTGTTAAGTTAAAGAGCTCGTCGCGTAA 703
Query 654 AGAGTTAAAGGAATCGCATAAGAAAGGAAAAGTGCCGTTTGGTCTCAGAATTAAAGCGCC 713
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 704 AGAGTTAACGGAATCGCAGAAGAAAGGAAAAGTGCCGTTTGGTCTCAGAATTAAAGCGCC 763
Query 714 GGTTAAGTTTAAGGTTGGCGCCGTTACGACGTGGACTATGACCGTGACGGTGGATTGCAA 773
||||||||||||||||||| ||||||| |||||||| |||||| | ||||||||||||||
Sbjct 764 GGTTAAGTTTAAGGTTGGCTCCGTTACAACGTGGACGATGACCATTACGGTGGATTGCAA 823
Query 774 AATAAAAGTGGACAAGTTAACGGCATCAGCAACTGTGGTCACGGAAAACTGCGATACGGG 833
||||| |||||| ||||||||||| |||||||||||| |||||||| ||||| |||||
Sbjct 824 AATAACAGTGGATAAGTTAACGGCGTCAGCAACTGTGAAGACGGAAAATTGCGAAACGGG 883
Query 834 CTTGAGTCTGTTGTGAATTTTGAGTTAGTTTTGTTTATGCCAAGTTTGG-TTCGGTTCGA 892
|||||| ||||||| || |||||| |||||||||||||||| | | || || | |||||
Sbjct 884 CTTGAGCCTGTTGTAAAATTTGAGCTAGTTTTGTTTATGCCTTGATGGGCTTTG-TTCGA 942
Query 893 ATTATGTTATTATTAGTTTGTTT-A---A-T-T-TATTTT-GAACTAAAATTGAAATTTG 944
||||||||||| ||||||||||| | | | | |||||| ||| |||||||||||||||
Sbjct 943 ATTATGTTATTTTTAGTTTGTTTGATTCAATATATATTTTTGAATTAAAATTGAAATTTG 1002
Query 945 C 945
|
Sbjct 1003 C 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5