BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489024
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21140.1 | Symbols: emb1379 | embryo defective 1379 | chr5:7... 1779 0.0
> AT5G21140.1 | Symbols: emb1379 | embryo defective 1379 | chr5:7187096-7189619
REVERSE LENGTH=1357
Length=1357
Score = 1779 bits (963), Expect = 0.0
Identities = 1169/1263 (93%), Gaps = 36/1263 (3%)
Strand=Plus/Plus
Query 1 AAACCCTAACTTTTTCATACGGTGAAATTACGGAGG--TCTGAGGATGGTATCGCTAAGC 58
|||||||| ||||||||||| ||||||||||||||| ||| ||||||| ||||||||||
Sbjct 54 AAACCCTAGCTTTTTCATACTGTGAAATTACGGAGGTCTCTAAGGATGGCATCGCTAAGC 113
Query 59 TGGAAGCACCACACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAA 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TGGAAGCACCATACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAA 173
Query 119 TTTCACTCAATCTTCACCGGCGTCACCGGCAGAAACCCAGTAACTGTTAAAAAGACATTT 178
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 174 TTTCACTCAATCTTCACCGCCGTCACCGGCAGAAACCCAGTAACTGTTAAAAAAATATTT 233
Query 179 GACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTTGAGTTGAAGGCT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTTGAGTTGAAGGCT 293
Query 239 TGTAGAGATCAGTATGATGGTCAAGTTTGTTATGGAGTCGTTAACAATGTCTCTGATGAT 298
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 294 TGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAGTCGTTAACAATGTGGCTGATGAT 353
Query 299 CAATCCAAACTCGGGACTAAATATTCTGTTCCGCAGATCGC-TTTCTTTAAAGGCGTTAT 357
|||||||||||||||||||||||||||||||| ||||| || ||| ||||||||| ||||
Sbjct 354 CAATCCAAACTCGGGACTAAATATTCTGTTCCCCAGATTGCATTT-TTTAAAGGCATTAT 412
Query 358 AGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGATGCTCTTAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGATGCTCTTAA 472
Query 418 TATCCGATTGGAGAATCAGATATCAAGTGAAGCCAGCAGTAGTCAACAGCAAGTCCCTCC 477
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 TATTCGATTGGAGAATCAGATATCAAGTGAAGCCAGCAGCAGTCAACAGCAAGTCCCTCC 532
Query 478 TGCTTTCAGGAACTTTTCGATGTCGCAAAAGGAAAAAACTCTCGATGAACTTGTAAGGGA 537
|||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 533 TGCTTTCAAGAACTTTTCAATGACACAAAAGGAAAAAACTCTCGATGAACTTGTAAGGGA 592
Query 538 CAAATGGCTGTGTCGCACAAGAGAGGGCAACATCGGACTTGGTATAAGATCTCTTCTTGA 597
||| |||||||| |||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 593 CAAGTGGCTGTGCCGCACAAGAGAGAGAAACATTGGACTTGGTATAAGATCTCTTCTTGA 652
Query 598 CCTGCGCAGTTGGTTCAGGAACAATGATGTTCCTTCCTGTGAAGTCTGCAATGAAGCTGG 657
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 653 CCTTCGCAGTTGGTTCAGAAACAATGATGTTCCTTCCTGTGAGGTCTGCAATGAAGCTGG 712
Query 658 AGTAAAGGCGGATTTGTGTCCAACCGAAGGTTGCACTGTCCGGATACACAAGTACTGCCT 717
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 713 AGTAAAGGCAGATTTGTGTCCAACCGAAGGTTGCCCTGTCCGGATACACAAGTACTGCCT 772
Query 718 CAAAAAATTGTTATCTCAAAGGGATGATAAACGTTGCTCTGGTTGTGGGAAGCCATGGCC 777
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 773 CAAAAAATTGTTATCTCAAAGGGATGATAAACGTTGCTCTGGTTGCGGGAAGCCATGGCC 832
Query 778 TTTGAGTAAAATTACAAAAGCAGAAGCTGCTGACGAAGCAATGAATGAGGAGGAGGAAAG 837
|||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||
Sbjct 833 CTTGAGTAAAATTACAAAAACAGAAGCTGCTGAAGAAGCAATGAATGATGAAGAGGAAAG 892
Query 838 CGAGACTCAAGCCGCAGCTCCAAAATCCAAAAGAAAAAGACAACTTAGGAGTCATGGAGA 897
|||||||||||| ||||||||||| ||||||||| |||||||| || | | |||
Sbjct 893 CGAGACTCAAGCAACAGCTCCAAAAGCCAAAAGAAGAAGACAAC--AG----C--G-AGA 943
Query 898 GTCAACTGAAAATGGTTCTTCTCAAGCTTCTTTAGCTTCAACTAGTGGTGCTAA-AGCGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 944 CTCAACTGAAAATGGTTCTTCTCAAGCTTCTTTAGCTTCAACTAGTGGTGCTAATA-CGA 1002
Query 957 GAAGAGTAACCCGTAGCG--GG-CACTCGATGTaaaaaaaaCCATTTAAGAACTCTGGTT 1013
|||||||||||||||||| || ||||||| |||||||| || ||||||||||| ||||
Sbjct 1003 GAAGAGTAACCCGTAGCGTTGGGCACTCGAGGTAAAAAA--CCGTTTAAGAACTCCGGTT 1060
Query 1014 TTAGGGATTAGATGTATATTTTGACGACCGTTCTATGTCCAAACATCACTGGAAGTTTGG 1073
|||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 1061 TTAGGGCTTAGATGTATATTTTGATGGCCGTTCTATGTCCAAACATCACTAGAAGTTTGG 1120
Query 1074 TCTGATCTGATGTTTTCTCTTGTGGATCATTGATGGAGTCATGGAGTGTTAAA------- 1126
| |||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1121 TATGATCTGATGCTTTCTCTTGTGGATCATTAATGGAGTCATGGAGTGTTAAAATATATT 1180
Query 1127 ----CTCCTCGGTTAAAGTCTACAACATATCTAAATTTTAAACCCGAGAATTTGATGCTA 1182
||||||||||||||||||||| |||| |||||||||| |||||||||| || |||
Sbjct 1181 TAAACTCCTCGGTTAAAGTCTACAATATATTTAAATTTTAATTCCGAGAATTT-ATACTA 1239
Query 1183 AATTGTGATTTTGTCCTTTGTGCATTTAACTAACTAAAATTCAAATGAACTTATAAAAGT 1242
|| |||||||||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 1240 AAATGTGATTTTGTCCTTTGTGCATTTAACTAA--AA--TTCAAATGAACTTATAAATGT 1295
Query 1243 AAA 1245
|||
Sbjct 1296 AAA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5