BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489026
Length=3088
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21160.3 | Symbols: | LA RNA-binding protein | chr5:7198777... 4185 0.0
> AT5G21160.3 | Symbols: | LA RNA-binding protein | chr5:7198777-7204097
REVERSE LENGTH=2760
Length=2760
Score = 4185 bits (2266), Expect = 0.0
Identities = 2580/2723 (95%), Gaps = 56/2723 (2%)
Strand=Plus/Plus
Query 1 TTGGGGTTATACGTTTCACTGTTTGTTACAT--T-G-----T-CTCGCTTAAAGAGTGTC 51
||||||||||||||||||||||||||| ||| | | | ||| |||||||||||||
Sbjct 8 TTGGGGTTATACGTTTCACTGTTTGTTTCATCCTCGCTTATTCCTCCCTTAAAGAGTGTC 67
Query 52 GCCACC-AAA-A-ACA-ACACACTTGCCTCCTTCTTCGACCTCTCTTCATCACATTGCGT 107
|||||| ||| | ||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct 68 GCCACCAAAACACACACACACACTTGCCTCCTTCTTCAACCTCTCTTCCTCACATTGCGT 127
Query 108 CTTCTCCTTCCGATCCTTCAATCCTCGTTCCGTTTTTGATCCAATTGAATCGCTTCCGTC 167
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 128 CTTCTCCATCTGATCCTTCAATCCTCGTTCTGTTTTTGATCCAATTGAATCGCTTCCTTG 187
Query 168 TTTTGATTCTGTTTATCTTTCCAAGTTTCTGATGATGGCGGAGACTGAAGGATCAGTGGC 227
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 188 TTTTGATTCTGTTTATCTTTCCAAGTTTCTAATGATGGCGGAGACTGAAGGATCAGTGGC 247
Query 228 CGATGATCGAGAATTGATCAGCCGTGAAGGTGCTATTGGGACTAAGTCTCCGTGGAAAAC 287
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 248 CGATGATCGAGAATTGATCACCCGTGAAGGTGGTATTGGGACTAAGTCTCCGTGGAAAAC 307
Query 288 AACGGCTTCTACTGCTGAGACTATTGACGCTCCTGTAATGGGAGCTCATTCATGGCCTGC 347
|||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 308 AACGACTTCTCCTGTTGAGACTATTGACGCTCCTGTAATGGGAGCTCATTCGTGGCCTGC 367
Query 348 GCTCGCCGATGCTGCGCAACAACCGCGTCCCAAGAATCCTCCGCCCTCTGCACCTGCACC 407
|||||||| ||||| |||||||||||||| |||||||||||| || ||||||||
Sbjct 368 ACTCGCCGACGCTGCCCAACAACCGCGTCCTAAGAATCCTCCG------GCGCCTGCACC 421
Query 408 TGCACCGCCGTCTAAAAACATTCCGACATCTATCCCAATCCCTTCTCAGGCTGTAGCTGG 467
||| ||||||||||||||||||||||| ||||||||||||||| ||| ||| ||| ||||
Sbjct 422 TGCTCCGCCGTCTAAAAACATTCCGACGTCTATCCCAATCCCTACTCCGGCCGTAACTGG 481
Query 468 TCAAGCGAAATCCAAGGGTGGTGGAAAGGCTAATAATCCTGGACACAAGAATCCATCTGG 527
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 482 TCAAGCGAAATCTAAGGGTGGTGGAAAGGC---TAATCCTGGACACAAGAATCCATCTGG 538
Query 528 CCGTCATTCTAAACCAGGCTCC-AGGAGCAACCAAAATGGTCCTCCTCCACCACCTCCTC 586
||||||||| |||||||| ||| ||||||||||| ||||| |||| |||||||
Sbjct 539 CCGTCATTCAAAACCAGG-TCCGAGGAGCAACCAGAATGG---TCCT------CCTCCTC 588
Query 587 CTCCTTATCTCGTGCATGCTGTACCGTATCATCCACCTCCTTTTCCACCTATGGTGCCTC 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CTCCTTATCTCGTGCATGCTGTACCGTATCATCCACCTCCTTTTCCACCTATGGTGCCTC 648
Query 647 TGCCACATGCTGCTGCTCCAGATTTTCCATATGCTCCTTATCCTCCCTACCCGGTTCCTG 706
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 649 TGCCACATGCTGCTGGTCCAGATTTTCCATATGCACCTTATCCTCCCTACCCGGTTCCTG 708
Query 707 TTCCTCCTGTTTCGGACTCTGGCAATGAGAAGCAAGTTCAAGCTTCCCCTCTTCCACCTG 766
| ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGCCTCCTGTTACTGAGTCTGGCAATGAGAAGCAAGTTCAAGCTTCCCCTCTTCCACCTG 768
Query 767 TGCTGCCACCTCCTCAAGGGGATCCTGGAAAGCCTTGGCCGCATCAGAGGGGTTTTGACC 826
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TGTTGCCAGCTCCTCAAGGGGATCCTGGAAAGCCTTGGCCGCATCAGAGGGGTTTTGACC 828
Query 827 CCAGAAACATGCCTCAAGGAGGTGCTGGACCAAGAAATTTCGGGAGACCTCCATTTATGG 886
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CCAGAAACATGCCAC-A--AGGTGCTGGACCAAGAAATTTCGGGAGACCTCCATTTATGG 885
Query 887 GTCCAGCTCCTGGGTTCCTCGTTGGTCCAGGTCCAGGCTTTCCTGGGCCTGTATACTACT 946
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GTCCAGCTCCTGGGTTCCTGGTTGGTCCAGGTCCAGGCTTTCCTGGGCCTGTATACTACT 945
Query 947 TGCCGGGTCCACCCCCTGGAGCTATAAGAGGTCCTTATCCTCCACGCTTTTCTCCATACC 1006
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 946 TGCCGGGTCCACCCCCTGGAGCTATAAGAGGTCCTTATCCTCCACGCTTTGCTCCATACC 1005
Query 1007 CTGTAAACCAGGGTCCTCCAGTACTATCTCCAGAAAAACTCGACTTAAGGGATAGAGTCT 1066
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CTGTAAACCAGGGTCCTCCAATACTATCTCCAGAAAAACTCGACTTAAGGGATAGAGTCT 1065
Query 1067 TAAAACAAGTAGAGTATTATTTCAGGCAACTTACTCCTTTATTTGATGAAAATCTTGAGA 1126
|||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 1066 TAAAACAAGTAGAGTATTATTTCA-G-----------------TGATGAAAACCTTGAGA 1107
Query 1127 ATGATCATTACCTCATTTCTTTGATGGATGAAGAAGGATGGGTTCCCACAAAAATTATAG 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 ATGATCATTACCTCATTTCTTTGATGGATGAAGAAGGATGGGTTCCCACAAAAATTATAG 1167
Query 1187 CTGGCTTCAAAAGGGTTAAAGCAATGACCATGGATGTTGATTTTATTGTCTATGCGTTGG 1246
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1168 CTGGCTTCAAAAGGGTTAAAGCAATGACTATGGATGTTGATTTTATAGTCTATGCGTTGG 1227
Query 1247 GGTTTTCTAATTCTGTTGAAGTGCAGGGTGACCAGATACGCAAGCGTGACAAGTGGTCTG 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GGTTTTCTAATTCTGTTGAAGTGCAGGGTGACCAGATACGCAAGCGTGACAAGTGGTCTG 1287
Query 1307 ACTGGATTCCTGCATCTAAAAAGTCAGCCTCTGTGGACAAAATTGGAGACAGTGACAAAT 1366
|||||||||||||||||||||||||| |||||| ||| | |||||||||| ||||||||
Sbjct 1288 ACTGGATTCCTGCATCTAAAAAGTCAACCTCTGCGGAGACAATTGGAGACGGTGACAAAG 1347
Query 1367 ATTCCCTAGAAAGTATAACAAGCGGGGATAATTTTGGAAAACCTTCGAAGGGTTCTTCAA 1426
|||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1348 ATTCCCCAAAAAGTATAACAAGCGGGGATAATTTTGGAAACCCTTCAAAGGGTTCTTCAA 1407
Query 1427 AGCCTACCGTGTCCGATTTCTCTTCAGAGGGAGCTCAGTCATCAAGAACCAATAATTATA 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 AGCCTACCGTGTCCGATTTCTCTTCAGAGGGAGCTCAGTCATCAAGAACCAATAATTATA 1467
Query 1487 AAAGTGGTTACCTGAAATCATCAGCAGACGAAAAAAGAAATGTGGAGGACTTGTCAAACG 1546
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 AAAGTGGTAACCTGAAATCATCAGCAGACGAAAAAAGAAATGTGGAGGACTTGTCAAACG 1527
Query 1547 ATTTTTCAAACACTTTCTTGCTTGACGAGGAACTGGATCTGGAGCACAGAAGCCCGAGAA 1606
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1528 ATTTTTCAAACACTTTCTTGCTTGACGAGGAACTAGATCTGGAGCACAGAAGCCCGAGAA 1587
Query 1607 AGAGTGGACTGTCTATGTCCAAAAGCATTGAGTATGAAGACGATGATATGGCTGTTGATG 1666
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 AGAGTGGACTGTCCATGTCCAAAAGCATTGAGTATGAAGACGATGATATGGCTGTTGATG 1647
Query 1667 ATCAAGATATTCAGAAGCTTGTAATTGTTACCCAGAATAGTGGTAAAAGTGATGGCACTG 1726
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1648 ATCAAGATATTCAGAAACTTGTAATTGTTACCCAGAATAGTGGTAAAAGTGATGGCGCTG 1707
Query 1727 GAATTGGTGTGACGAAAGCAAAAAATATTCCTAAGGAACTTGCCTCCACAATAAACGATG 1786
|||| |||| |||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1708 GAATCGGTGGGACGGAAGCAAAAAATATTCCTAAGGAGCTTGCCTCCACAATCAACGATG 1767
Query 1787 GTCTTTACTACTTTGAGCAGGAGC-TaaaaaaaaaTCGATCTGGCCGTAGGAAGAACAAC 1845
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1768 GTCTTTACTACTTTGAGCAGGAGCTTAAAAAAAAA-CGATCTGGCCGTAGGAAGAACAAC 1826
Query 1846 TCCCATTTGGATACCAAAGATGGGAAAATCAAATCTGGGGGAGGATTGAACACGAAATTG 1905
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 1827 TCCCATTTGGATACCAAAGATGGGAAAATCAAATCTGGGGAAGGATTGAACACTAAGTTG 1886
Query 1906 GGAGAAAATTCCGCAGCAAATGAAGGAGGGGAAGAGCATGGAATCATTACTTCACGGAGG 1965
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1887 GGCGAAAATTCCGCAGCAAATGATGGAGGGGAAGAGCATGGAATCATTACTTCACGGAGG 1946
Query 1966 AAGCAAAATAAGGGAACGCACAAACATCATACAGCCCATGCACGGAGGTTCTTCTCGAGT 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 AAGCAAAATAAGGGAACGCACAAACATCATACAGCCCATGCACGGAGGTTCTTCTCGAGT 2006
Query 2026 AACATAAGGAACCATGGAAATATATCAGAAAGTCCGCCTAGTAGCTCCATTGGATTTTTC 2085
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 AACATAAGGAACAATGGAAATATATCAGAAAGTCCGCCTAGTAGCTCCATTGGATTTTTC 2066
Query 2086 TTTGGTTCTACACCACCAGACAGTCATGGCCCTAGGCTTTCAAAATTGAGTTCATCTCCA 2145
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2067 TTTGGTTCTACACCACCAGACAGTCATGGCCCTAGGCTTTCGAAATTGAGTTCATCTCCA 2126
Query 2146 CAATGCACACTTTCTGGAAGCAGTCCACCTGTGGGCTCTTTGCCAAAATCATTTCCACCT 2205
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2127 CAATGTACACTTTCTGGAAGCAGTCCACCTGTGGGCTCTTTGCCAAAATCATTTCCACCT 2186
Query 2206 TTTCAACATCCAAGCCACCAACTGTTGGAAGAGAATGGGTTTAAACAAGAAAAGTACTTG 2265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 TTTCAACATCCGAGCCACCAACTGTTGGAAGAGAATGGGTTTAAACAAGAAAAGTACTTG 2246
Query 2266 AAGTATCGCAAGCGCTGCTTAAACGAAAGAAAGAAGCTGGGTAGCGGATGCAGTGAGGAA 2325
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2247 AAGTATCGCAAGCGCTGCTTAAACGAAAGAAAGAAGCTAGGTAGCGGATGCAGTGAGGAA 2306
Query 2326 ATGAATCATTTGTACCGATTTTGGTCATATTTCCTCAGAGACACCTTTGTTCTGTCTATG 2385
||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 2307 ATGAACCATTTGTACCGATTTTGGTCGTATTTCCTCAGAGACACATTTGTTCTCTCTATG 2366
Query 2386 TATGATGACTTTCAGAAGTTTGCTCTTGAGGATGCAGCTGGCAATTACAATTATGGGCTG 2445
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2367 TATGATGACTTTCAGAAGTTTGCTCTTGAGGATGCAGCTGGCAATTACGATTATGGGCTG 2426
Query 2446 GAGTGTCTCTTTCGGTTTTATAGTTATGGTCTGGAGAAGCACTTTGATGAGGACCTTTAC 2505
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2427 GAGTGTCTCTTTAGGTTTTATAGTTATGGTCTGGAGAAGCACTTTGATGAGGACCTTTAC 2486
Query 2506 AAGGACTTTGAGAAGCTATCGCTTGACTTCTACCACAAGGGAAATCTGTATGGCTTGGAG 2565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2487 AAGGACTTTGAGAAGCTATCGCTTGACTTCTACCACAAGGGAAATCTGTATGGCTTGGAG 2546
Query 2566 AAATATTGGGCATTCCACCATTATCGAGGCAAAAAAGATCCGATAACAAAGCACCCTGAG 2625
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2547 AAATATTGGGCATTCCACCATTATCGAGGCAAAGAAGAACCGATAACAAAGCACCCTGAG 2606
Query 2626 CTAGAGAAGCTACTGAAGGAAGAATACCGTAGCATAGACGATTTCCGAGCAAAGGATACA 2685
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 2607 CTAGAGAAACTACTGAAGGAAGAATTCCGTAGCATAGACGATTTCCGAGCAAAGGAAACA 2666
Query 2686 GTCACCAACCAAAAAGAAAACAA 2708
||||||||||||||||||||||
Sbjct 2667 ATCACCAACCAAAAAGAAAACAA 2689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153561012523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5