BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489028
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21170.2 | Symbols: AKINBETA1 | 5'-AMP-activated protein kin... 1801 0.0
> AT5G21170.2 | Symbols: AKINBETA1 | 5'-AMP-activated protein kinase
beta-2 subunit protein | chr5:7205667-7208496 FORWARD
LENGTH=1271
Length=1271
Score = 1801 bits (975), Expect = 0.0
Identities = 1184/1277 (93%), Gaps = 46/1277 (4%)
Strand=Plus/Plus
Query 1 AtctctctcctctctttgtctctctcACTTCTGTGATTTGGGCTTTTTCTCAGATGGGAA 60
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 1 ATCTCTCTCCTCTCTTTGTCTCTCTCGCTTCTGTGATTTGGGC-TTTT-TCAGATGGGAA 58
Query 61 ATGCGAACGGCAAAGAAGACGACGCTACCGCC----GCCG-CCAGC-GGTGTTACCTCAT 114
|||||||||||||||| || ||||| ||||| || | || | ||||||||| |
Sbjct 59 ATGCGAACGGCAAAGACGAAGACGCCGCCGCCGGTAGCGGTGGTGCAGATGTTACCTCGT 118
Query 115 CTTCGGCGAGATCCAACGGCGGCGATCCTTCTGCACGCAGTCGTCATCGTCGTCCTTCTT 174
| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 119 CCTCGGCGAGATCTAATGGCGGCGATCCTTCTGCACGCAGTCGTCACCGTCGTCCTTCTT 178
Query 175 CAGATTCTATGAGCAGTTCTCCTCCCGGAAGTCCCGCTCGATCTCCATCTCCTTTCTTAT 234
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 CAGACTCTATGAGCAGTTCTCCTCCCGGAAGTCCTGCTCGATCTCCATCTCCTTTCTTAT 238
Query 235 TCGCTCCTCAGCCCACATTGTTATTCCACCTTACATCTTACAACATTTGCTCACCTATGC 294
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 TCGCTCCTCAGCCCACATTGTTATTCCACGTTACATCTTACAACATTTGCTCACCTATGC 298
Query 295 GTCACCTCTTCCATTGTTTAGGCATAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 GTCACCTCTTCCATTGTTTAGGCTTAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 358
Query 355 TGGTTCCTGTGGCTCCATTGCAGAGAGCTAACGCCCCTCCTTCACCTAATAACATCCAAT 414
||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 359 TGGTTCCCGTGGCTCCATTGCAGAGAGCAAACGCCCCTCC-T--CCTAATAACATCCAAT 415
Query 415 GGAACCAATCACAGAGAGTTTTTGATAATCCACCAGAGCAAGGAATCCCTACTATCATTA 474
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 416 GGAACCAATCACAGAGAGTTTTTGATAATCCCCCAGAGCAAGGAATCCCTACCATCATTA 475
Query 475 CTTGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCCTGGGACAATTGGAGATCAA 534
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 CATGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCATGGGACAATTGGAGATCAA 535
Query 535 GGAAGAAGCTGCAGAAATC-GGGAAAAGACCACTCAATTCTCTTTGTCCTTCCATCTGGC 593
||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 536 GGAAGAAGCTGCAGAAATCAGGG-AAAGACCACTCGATTCTCTTTGTCCTTCCATCTGGC 594
Query 594 ATATACCACTACAAGGTGATTGTCGACGGTGAATCCAAATACATTCCAGATTTACCATTT 653
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 595 ATATACCACTACAAGGTGATTGTGGACGGTGAATCCAAATACATCCCAGATTTACCCTTT 654
Query 654 GTATCAGACGAAATTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 713
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTAGCAGACGAAGTTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 714
Query 714 AACCCAGAAAGCATAGTGGAGTTTGAAGCGCCACCGTCACCTGATCATAGCTACGGTCAA 773
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 715 AACCCAGAAAGCATAGTGGAGTTTGAGGCGCCACCATCACCTGATCATAGCTACGGTCAA 774
Query 774 ACCCTACCAGCCGCAGAAGATTACGCAAAAGAGCCACTTGCGGTGCCACCTCAGCTTCAT 833
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 775 ACCCTACCAGCCGCAGAAGATTACGCGAAAGAGCCACTGGCGGTGCCACCTCAGCTTCAT 834
Query 834 CTAACACTTCTTGGCAGC-ACGGAAGAAAGAGCCGTAGCCACAAAGCCTCAACATGTGGT 892
|||||||||||||||| | || ||||| | |||| |||||||||||||||||||||||||
Sbjct 835 CTAACACTTCTTGGCA-CTACTGAAGAGACAGCCATAGCCACAAAGCCTCAACATGTGGT 893
Query 893 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 953
Query 953 AACCCAGAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1012
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AACCCACAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1013
Query 1013 ACCCTAAAAATTCAGTGCCACATTGTTCT-T-T-T--CAT--------ATCTC--AATTA 1057
||||||||||||||||||||||||||||| | | | | | ||||| |||||
Sbjct 1014 ACCCTAAAAATTCAGTGCCACATTGTTCTCTCTCTTTCTTTCTTTTTCATCTCTCAATTA 1073
Query 1058 TGTGAAACC-T-TTACTTTGTTCATAGTGA---GTG----CCCAACATT-GAGTTTATTA 1107
||||||| | | || ||||||||||||||| ||| ||||||||| ||||||||||
Sbjct 1074 TGTGAAAACATGTT-CTTTGTTCATAGTGACTAGTGAGTGCCCAACATTTGAGTTTATTA 1132
Query 1108 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGCAACGATTG 1167
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1133 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGTAACGATTG 1192
Query 1168 TACTCTTATATATTTCCTGCAAAAACTGTGAAATACATTCTCTAATAATGGGCTATAACA 1227
| | || ||| |||| |||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1193 TTGT-TT-TAT-TTTC-TGCAAAAACTGTAAAATACATTCGCTAATAATGG-CTATAACA 1247
Query 1228 AGCTTATCTGCTAGCAA 1244
|||||||||||||||||
Sbjct 1248 AGCTTATCTGCTAGCAA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5