BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489030
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21274.1 | Symbols: CAM6, ACAM-6 | calmodulin 6 | chr5:72145... 933 0.0
AT1G66410.2 | Symbols: CAM4 | calmodulin 4 | chr1:24774260-2477... 363 2e-99
> AT5G21274.1 | Symbols: CAM6, ACAM-6 | calmodulin 6 | chr5:7214500-7216019
REVERSE LENGTH=759
Length=759
Score = 933 bits (505), Expect = 0.0
Identities = 546/565 (97%), Gaps = 6/565 (1%)
Strand=Plus/Plus
Query 1 AAAAGGTAAGAAGGAAAATGGCGGATCAGCTCACCGATGACCAGATCTCAGAGTTCAAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AAAAGGTAAGAAGGAAAATGGCGGATCAGCTCACCGATGACCAGATCTCAGAGTTCAAGG 112
Query 61 AAGCCTTTAGCCTCTTCGATAAGGATGGTGATGGTTGCATCACCACCAAGGAGCTCGGAA 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 113 AAGCCTTTAGCCTCTTCGATAAGGATGGTGATGGTTGTATCACCACCAAGGAGCTCGGAA 172
Query 121 CCGTGATGAGGTCTTTGGGGCAAAACCCAACAGAAGCTGAGCTACAAGACATGATCAATG 180
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 173 CCGTGATGAGGTCTCTGGGGCAAAACCCAACAGAAGCTGAGCTTCAAGACATGATCAATG 232
Query 181 AAGTTGATGCAGATGGGAACGGGACCATAGATTTCCCGGAGTTCCTGAACCTGATGGCAA 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 233 AAGTTGATGCAGATGGGAACGGGACCATTGATTTCCCGGAGTTCCTGAACCTGATGGCAA 292
Query 241 GGAAAATGAAGGACACTGATTCAGAGGAAGAGCTGAAGGAAGCCTTTAGGGTTTTTGATA 300
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 293 GGAAAATGAAGGACACTGATTCAGAGGAAGAGCTCAAGGAAGCTTTTAGGGTTTTTGATA 352
Query 301 AAGACCAGAATGGTTTCATATCTGCAGCAGAGCTTCGACATGTGATGACAAATCTCGGGG 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 353 AAGACCAGAATGGTTTCATATCTGCAGCAGAGCTTCGACATGTCATGACAAATCTCGGTG 412
Query 361 AGAAGCTATCCGATGAGGAAGTTGATGAGATGATCCGAGAAGCGGATGTTGATGGCGATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGAAGCTATCCGATGAGGAAGTTGATGAGATGATCCGAGAAGCGGATGTTGATGGCGATG 472
Query 421 GTCAGATCAACTATGAAGAATTCGTCAAAGTCATGATGGCTAAGTGAGAGAATTTTATC- 479
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GTCAGATTAACTATGAAGAATTCGTCAAAGTCATGATGGCTAAGTGAGAGAATTTTATCT 532
Query 480 ----CCCATAAAAAAGAAACAAGATTTATTATTTCTACAGTGAAGTTTCATTATGACTTG 535
|||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 533 TAAGCCCACAAAAA-GAAACAAGATTTATGATTTCTACAGTGAAGTTACATTATGACTTG 591
Query 536 ATTCTGGTTGCCTTCTTTAGGACAT 560
||||||||||| |||||||||||||
Sbjct 592 ATTCTGGTTGCGTTCTTTAGGACAT 616
Score = 71.3 bits (38), Expect = 1e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 575 TTTTAGTGTTATGTGAAGTATGAACTCATATTTTGCTC 612
||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTTTAGTGTTATGTGAAGTATGAACTCATATTTTGCTC 690
> AT1G66410.2 | Symbols: CAM4 | calmodulin 4 | chr1:24774260-24775984
REVERSE LENGTH=850
Length=850
Score = 363 bits (196), Expect = 2e-99
Identities = 324/385 (84%), Gaps = 11/385 (3%)
Strand=Plus/Plus
Query 88 GTGATGGTTGCATCACCACCAAGGAGCTCGGAACCGTGATGAGGTCTTTGGGGCAAAACC 147
||| ||||||||||||||| |||||||| ||||| |||||| |||| | ||||| ||||
Sbjct 301 GTG-TGGTTGCATCACCACAAAGGAGCTGGGAACAGTGATGCGGTCACTAGGGCAGAACC 359
Query 148 CAACAGAAGCTGAGCTACAAGACATGATCAATGAAGTTGATGCAGATGGGAACGGGACCA 207
||||||||||||||||||||||||||||||| || ||||| || ||||| ||||| ||||
Sbjct 360 CAACAGAAGCTGAGCTACAAGACATGATCAACGAGGTTGACGCTGATGGAAACGGAACCA 419
Query 208 TAGATTTCCCGGAGTTCCTGAACCTGATGGC-AAGGAAA-ATGAAGGACACTGATTCAGA 265
| || ||||| |||||| | ||||| ||||| || ||| ||||||||||| || || ||
Sbjct 420 TTGACTTCCCTGAGTTCTTAAACCTAATGGCTAA--AAAGATGAAGGACACAGACTCGGA 477
Query 266 GGAAGAGCTGAAGGAAGCCTTT-AGGGTTTTTGATAAAGACCAGAATGGTTTCATATCTG 324
|||||||||||| ||||| ||| ||||| || || ||||||||||| ||||||||||| |
Sbjct 478 GGAAGAGCTGAAAGAAGC-TTTCAGGGTGTTCGACAAAGACCAGAACGGTTTCATATCCG 536
Query 325 CAGCAGAGCTTCGACATGTGATGACAAATCTCGGGGAGAAGCT-ATCCGATGAGGAAGTT 383
| ||||||||||| ||||||||||| ||||| || ||||| || | | ||||| || ||
Sbjct 537 CTGCAGAGCTTCGCCATGTGATGACGAATCTAGGTGAGAAACTGA-CTGATGAAGAGGTC 595
Query 384 GATGAGATGATCCGAGAAGCGGATGTTGATGGCGATGGTCAGATCAACTATGAAGAATTC 443
|| |||||||| || ||||| ||||||||||| ||||||||||| ||||| || || ||
Sbjct 596 GAGGAGATGATTCGTGAAGCAGATGTTGATGGAGATGGTCAGATAAACTACGAGGAGTTT 655
Query 444 GTCAA-AGTCATGATGGCTAAGTGA 467
||||| | | |||||||||||||||
Sbjct 656 GTCAAGATT-ATGATGGCTAAGTGA 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5