BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489031
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21326.1 | Symbols: | Ca2+regulated serine-threonine protei... 2479 0.0
AT5G21222.1 | Symbols: | protein kinase family protein | chr5:... 955 0.0
> AT5G21326.1 | Symbols: | Ca2+regulated serine-threonine protein
kinase family protein | chr5:7217340-7222007 FORWARD LENGTH=1784
Length=1784
Score = 2479 bits (1342), Expect = 0.0
Identities = 1534/1620 (95%), Gaps = 39/1620 (2%)
Strand=Plus/Plus
Query 28 TCCCCAAA---GGCTACATCGGTTTTGTCACCTCTACTTGCTCACTTTTCTCCGGCCAAT 84
|||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 101 TCCCCAAAGGCGGCTACATCGGTTTTGTCACCTCTACTCGCTCACTTTTCTCCGTCCAAT 160
Query 85 TTTGCAGCTTTTGAAGATC---------A-A---GGAGTGATGAATCGGCCAAAGGTTCA 131
||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 161 TTTGCAGCTTTTGAAGATCAAGAGGTGAACATTCGGAGTGATGAATCGGCCAAAGGTTCA 220
Query 132 GCGTCGTGTTGGAAAGTATGAGGTTGGAAAAACGCTTGGACAAGGCACTTTTGCCAAAGT 191
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 221 GCGTCGTGTTGGAAAGTATGAGGTTGGAAAGACGCTTGGACAAGGCACTTTTGCGAAAGT 280
Query 192 TCGGTGTGCTGTTAATACTGAGACTGGAGAACGTGTGGCTCTCAAAATCCTTGATAAGGA 251
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 281 TCGGTGTGCTGTTAATACTGAGACAGGAGAACGCGTGGCTCTCAAAATACTTGATAAGGA 340
Query 252 GAAGGTTCTCAAGCATAAGATGGCTGAACTGATAAGGAGAGAAATTTGTACTATGAAGCT 311
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 341 GAAGGTTCTTAAGCATAAGATGGCTGAACAGATAAGGAGAGAAATTTGTACTATGAAGCT 400
Query 312 AATAAACCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACTAAGATATA 371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GATAAACCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACTAAGATATA 460
Query 372 TATTGTCCTAGAGTTCGGTACTGGTGGAGAGCTTTTTGACAAAATTGTACACGATGGGCG 431
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 461 TATTGTTCTAGAGTTCGGCACTGGTGGAGAGCTTTTTGACAAAATTGTACATGATGGGCG 520
Query 432 CTTGAAAGAAGAGAACGCACGGAAATATTTTCAGCAGCTTATCAATGCAGTTGATTACTG 491
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 521 CTTGAAAGAAGAGAATGCACGGAAATATTTTCAGCAGCTTATTAATGCAGTTGATTACTG 580
Query 492 CCATAGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCTCA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CCATAGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCTCA 640
Query 552 AGGAAATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGA 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AGGAAATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGA 700
Query 612 TGGTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TGGTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGA 760
Query 672 TCAAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTGTTTGTACT 731
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 761 TCAAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTCTTTGTACT 820
Query 732 ACTTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 ACTTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT 880
Query 792 AGCTGGTGAATTTTATTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 851
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AGCTGGTGAATATCATTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 940
Query 852 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCTGAGGTTCTGGAAGATGCGTG 911
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 941 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCAGAGGTTCTGGGAGATGCGTG 1000
Query 912 GTTCAAGAAAAATTACAAGCCAGCTGTTTTCGAGGAGAAGGAAGAAGCCAACTTGGATGA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GTTCAAGAAAAATTACAAGCCAGCTGTTTTCGAGGAGAAGGAAGAAGCCAACTTGGATGA 1060
Query 972 TGTGGACGCTGTTTTTAAAGATTCAGAAGAGCATCATGTCACAGAAAAGAAAGAGGAGCA 1031
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TGTGGACGCTGTTTTCAAAGATTCAGAAGAGCATCATGTCACAGAAAAGAAAGAGGAGCA 1120
Query 1032 ACCAACTTCGATGAATGCCTTTGAGTTGATATCAATGTCGAGAGCTCTGGATCTCGGGAA 1091
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 ACCAACTTCAATGAATGCCTTTGAGTTGATATCAATGTCGAGAGCTCTGGATCTCGGGAA 1180
Query 1092 TTTGTTTGAAGAGGAAGAGGGATTCAAGAGAGAAACGAGATTTGCAGCTAAAGGCGCAGC 1151
|||||||||||| ||||||||||||||| |||||||||||||||| |||||||| || ||
Sbjct 1181 TTTGTTTGAAGAAGAAGAGGGATTCAAGCGAGAAACGAGATTTGCTGCTAAAGGTGCTGC 1240
Query 1152 TAATGATTTAGTCCAGAAGATTGAAGAAGCTTCTAAGCCGCTTGGTTTTGATATTCAAAA 1211
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1241 TAATGATTTAGTCCAAAAGATTGAAGAAGCTTCTAAGCCGCTTGGTTTCGATATTCAAAA 1300
Query 1212 GAAAAACTATAAGATGAGACTTGAAAACGTGACTGCTGGAAGGAAGGGAAACCTAAAAGT 1271
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1301 GAAAAACTATAAGATGAGACTTGAAAACGTGACTGCTGGAAGGAAAGGAAACCTAAGAGT 1360
Query 1272 TGCAACTGAGATATTTCAAGTATCACCGTCTCTTCATATGATCGAAGTCCGGAAAACTAA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1361 TGCAACTGAGATATTTCAAGTATCACCGTCTCTTCATATGATCGAAGTCCGGAAAACGAA 1420
Query 1332 AGGGGATACATTAGAATTCCATAAGTTCTACAAGAAGCTCTCGACCTCACTTAACGATGT 1391
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1421 AGGGGATACACTAGAATTCCATAAGTTCTACAAGAAGCTCTCAACCTCACTTAACGATGT 1480
Query 1392 GGTTTGGAAATCTGGCGAGAGCTCCAGTCTAAGCAACTAAGAATA--GACTGAT--T-CA 1446
|||||||||||||||||||||||| |||||||||| |||||| | ||||||| | ||
Sbjct 1481 GGTTTGGAAATCTGGCGAGAGCTCTGGTCTAAGCAAATAAGAAAAAAGACTGATGATTCA 1540
Query 1447 AGTCCTTTATTT-AGCTTTTGCTTTCTGAT--A-Ctttttt-t--t--ttt-tttCAAGA 1496
||||||| ||| | || | |||| | || | |||||| | | ||| ||||||||
Sbjct 1541 AGTCCTTGCTTTGA-CTAT--CTTT-T-ATTTAGCTTTTTGCTGATACTTTCTTTCAAGA 1595
Query 1497 CTCAATTCTTTTAAATATTAGAGACAAAAACCCATGAGATTGA---CTCTGTACATATCG 1553
|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1596 CTCAATTCTTTTAAATATTAGAGACAAAAAGCCATGAGATTGATGACTCTGTAGATATCG 1655
Query 1554 AAGCATGTGCAGTAACATTATGCTGTTCATATCATTGCAAACTTCGATTGTGTTGTGTCA 1613
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1656 AAGCATGTGCAGTAAGTTTATGCTGTTCATATAATTGCAAACTTCGATTGTGTTGTGTCA 1715
> AT5G21222.1 | Symbols: | protein kinase family protein | chr5:7208643-7213894
FORWARD LENGTH=3010
Length=3010
Score = 955 bits (517), Expect = 0.0
Identities = 778/904 (86%), Gaps = 18/904 (2%)
Strand=Plus/Plus
Query 107 GAGTGATGAATCG-GCCAAAGGTTCA-GCGTCGTGTTGG-AAAGTATGAGGTTGGAAAAA 163
||||||||| | | |||||||| ||| |||| | ||||| ||| ||||||||||||| |
Sbjct 316 GAGTGATGAGT-GAGCCAAAGG-TCAGGCGTTGGGTTGGCAAA-TATGAGGTTGGAAGAT 372
Query 164 CGCTTGGACAAGGCACTTTTGCCAAAGTTCGGTGTGCTGTTAATACTGAGACTGGAGAAC 223
| | || || | | ||||| ||| | ||| |||||||| | || ||||| ||||| |
Sbjct 373 TGATCGGTGAATGTAATTTTGGGAAACTGCGGAGTGCTGTTGACACAGAGACAGGAGACC 432
Query 224 GTGTGGCTCTCAAAATCCTTGATAAGGAGAAGGTTCTCAAGCATAAGATGGCTGAACTGA 283
||||||| | | ||||||||||| || |||||||| ||||||||||||||||||| |
Sbjct 433 CTGTGGCTTTGATGATCCTTGATAAAGACAAGGTTCTGAAGCATAAGATGGCTGAACAAA 492
Query 284 TAAGGAGAGAAATTTGTACTATGAAGCTAATAAACCATCCAAATGTAGTGCGGCTGTATG 343
||| ||||||||||| || ||||||||| || ||||||||||||||||||| ||| ||||
Sbjct 493 TAAAGAGAGAAATTTCTATTATGAAGCTGATCAACCATCCAAATGTAGTGCAGCTTTATG 552
Query 344 AGGTTTTGGCGAGCAAGACTAAGATATATATTGTCCTAGAGTTCGGT-ACTGGTGGAGAG 402
||||||||||||||||| | |||||||||||||||||||||||| | | ||||||| ||
Sbjct 553 AGGTTTTGGCGAGCAAGGCGAAGATATATATTGTCCTAGAGTTC-ATCAGTGGTGGAAAG 611
Query 403 CTTTTTGACAAAATTGTACACGATGGGCGCTTGAAAGAAGA-GAACGCACGGAAATATTT 461
||||||||||| ||| | | ||||||||| |||| ||||| ||| |||| || ||||||
Sbjct 612 CTTTTTGACAAGATTAAAAATGATGGGCGCATGAATGAAGACGAA-GCACAGAGATATTT 670
Query 462 TCAGCAGCTTATCAATGCAGTTGATTACTGCCATAGCAGGGGAGTGTACCACCGGGACTT 521
|||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 671 CCAGCAGCTTATCAATGCAGTTGATTACTGCCACAGCAGGGGAGTGTACCACAGAGACTT 730
Query 522 AAAGCCGGAAAACTTGCTTCTAGATGCTCAAGGA-AATCTGAAAGTCTCTGATTTTGGAT 580
|||||| ||||| |||||||| ||||| ||| || ||| |||||||| |||| |||||||
Sbjct 731 AAAGCCAGAAAATTTGCTTCTTGATGCGCAA-GAGAATTTGAAAGTCGCTGAATTTGGAT 789
Query 581 TGAGTGCGTTGTCCCGACAAGTCAGGGGTGATGGTCTTCTTCACACTGCATGCGGAACTC 640
||| ||| ||||||| ||||| | |||| ||||| |||| |||||||||||| |||| ||
Sbjct 790 TGATTGCCTTGTCCCAACAAGCCGGGGGAGATGGCCTTCGTCACACTGCATGTGGAAATC 849
Query 641 CAAACTATGCTGCTCCTGAGGTTCTTAATGATCAAGGTTATGACGGGGCAACCGCAGACT 700
|| | |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 850 CAGATTATGCTGCTCCTGAGGTTCTTAATGATCAAGGCTATGATGGGGCAAAGGCAGACT 909
Query 701 TGTGGTCCTGTGGAGTGATACTGTTTGTACTACTTGCTGGCTACTTGCCTTTCGAGGATT 760
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 910 TGTGGTCCTGTGGAGTGATACTCTTTGTACTACTTGCTGGGTATTTGCCTTTCGAGGATT 969
Query 761 CTAATCTCATGACGCTGTATAAAAAGATAAT-AGCTGGTGAATTTTA-TTGTCCTCCTTG 818
||| ||||| ||||||||| |||||||| | | ||| || |||||| ||||||||||||
Sbjct 970 CTAGTCTCACGACGCTGTACAAAAAGAT-CTCATCTGCTG-ATTTTAGTTGTCCTCCTTG 1027
Query 819 GCTCTCTCCTGGTGCTAAGAACTTGATTGTCCGAATCTTGGATCCAAACCCTATGACTCG 878
||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1028 GCTCTCTTCTGGTGTTAAGAATTTGATCGTCCGAATCTTGGATCCAAACCCTATGACTCG 1087
Query 879 TATCACAATTCCTGAGGTTCTGGAAGATGCGTGGTTCAAGAAAAATTACAAGCCAGCTGT 938
||| |||||||| ||| || ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1088 TATAACAATTCCAGAGATTTTGGAAGATGTGTGGTTCAAGAAAGATTACAAGCCAGCTGT 1147
Query 939 -TTTCGAGGAGAAGGAAGAAGCCAACTTGGATGATGTGGACGCTGTTTTTAAAGATTCAG 997
||| || |||||| ||||||| || |||| ||||||||| |||||||| |||||||| |
Sbjct 1148 ATTT-GAAGAGAAGAAAGAAGCAAATTTGGCTGATGTGGAAGCTGTTTTCAAAGATTCTG 1206
Query 998 AAGA 1001
||||
Sbjct 1207 AAGA 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5