BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489034
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21482.1 | Symbols: CKX7, ATCKX5 | cytokinin oxidase 7 | chr... 2850 0.0
> AT5G21482.1 | Symbols: CKX7, ATCKX5 | cytokinin oxidase 7 | chr5:7226727-7230210
FORWARD LENGTH=1848
Length=1848
Score = 2850 bits (1543), Expect = 0.0
Identities = 1740/1834 (95%), Gaps = 17/1834 (1%)
Strand=Plus/Plus
Query 1 ACAGACAAACaaaaaaaGGTTTGGTTCCAAAAGCT-AAAAGCTTCCATCTACATTAGAGT 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ACAGACAAACAAAAAAAGGTTTGGTTCCAAAAGCTAAAAAGCTTCCATCTACATTAGAGT 60
Query 60 CTCTCAATTTAGCATTTacacacaat----cacacacacacacactcacacCAAAATGAT 115
||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 61 CTCTCTATTTAGCATTTACACACAATCACACACACACACACACACACACACCAAAATGAT 120
Query 116 AGCTTACATAGAACCATACTTCTTGGATAACGACGCCGAAGCCGCCTCGGCCGTCACCGC 175
||||||||||||||||||||||||||| ||||||||||| || ||||| |||| ||||||
Sbjct 121 AGCTTACATAGAACCATACTTCTTGGAAAACGACGCCGAGGCTGCCTCTGCCGCCACCGC 180
Query 176 CGCCGGAAAATCTACCGATGGCGTTTCTGAGTCACTTAACATCCAAGGAGAAATCGTATG 235
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CGCCGGAAAATCTACGGATGGTGTTTCTGAGTCACTTAACATCCAAGGAGAAATCTTATG 240
Query 236 CGGTGGAGCTGCGACGGATATGGCCGCGAGGGATTTTGGCGGTATGAACTGTGTGAAGCC 295
|||||||||||| ||||||| |||| ||| ||||||||||| |||||||||||||||||
Sbjct 241 TGGTGGAGCTGCGGCGGATATCGCCGGGAGAGATTTTGGCGGCATGAACTGTGTGAAGCC 300
Query 296 TCTTGCCGTGGTGAGACCGGTGGGACCAGAGGATATCGCCGGAGCGGTGAAAGCGGCTCT 355
|||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 301 TCTTGCTGTGGTGAGACCAGTGGGACCGGAAGATATCGCCGGAGCGGTGAAAGCGGCTCT 360
Query 356 GAGTTCAGATAAACTCACAGTGGCGGCGCGTGGAAACGGCCATTCTATCAACGGTCAAGC 415
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGGTCAGATAAACTAACGGTGGCGGCGCGTGGAAACGGCCATTCTATCAACGGTCAAGC 420
Query 416 CATGGCGGAAGGAGGACTCGTCGTCGATATGAGTACCACGGCGGAGAATCATTTCGAGGT 475
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATGGCGGAAGGAGGACTCGTTGTCGATATGAGTACCACGGCGGAGAATCATTTCGAGGT 480
Query 476 GGGTTATATATCCGGCGGTGATGCCACGGCGTTTGTTGATGTCTCCGGAGGGGCATTATG 535
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGTTATTTATCCGGCGGTGATGCCACGGCGTTTGTTGATGTCTCCGGAGGGGCATTATG 540
Query 536 GGAAAATGTGTTGAAACGGTGCGTTTCGGAGTACGGTTTGGCTCCGAGGTCGTGGACGGA 595
|||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 541 GGAAGATGTATTGAAACGGTGCGTTTCGGAGTACGGTTTGGCTCCGAGGTCTTGGACTGA 600
Query 596 TTATCTTGGGTTAACGGTGGGAGGTACGTTGTCAAATGCCGGCGTTAGTGGACAAGCGTT 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 TTATCTTGGGTTAACGGTGGGAGGTACGTTGTCAAATGCCGGCGTTAGTGGTCAAGCGTT 660
Query 656 CCGTTACGGACCACAGACGTCAAATGTAACGGAGTTAGACGTCGTAACGGGAAATGGTGA 715
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 661 CCGTTACGGACCACAGACGTCAAATGTAACGGAGTTGGACGTCGTTACGGGAAATGGTGA 720
Query 716 CGTCGTTACTTGCTCGGAGATTGAGAATTCAGAGCTCTTCTTCTCCGTTTTAGGTGGTCT 775
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 721 CGTCGTTACTTGCTCGGAGATTGAGAATTCAGAGCTATTCTTCTCTGTTTTAGGTGGTCT 780
Query 776 TGGTCAGTTTGGTATCATCACCAGAGCTAGGGTTTTGCTACAGCCAGCTCCAGATATGGT 835
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 TGGTCAGTTTGGTATCATCACCAGAGCTAGGGTTTTGCTACAGCCAGCTCCTGATATGGT 840
Query 836 GAGATGGATAAGAGTAGTATACACCGAGTTCGACGAGTTCACTCAGGACGCCGAGTGGCT 895
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 841 GAGATGGATAAGAGTAGTATACACCGAGTTCGATGAGTTCACTCAAGACGCCGAGTGGCT 900
Query 896 GGTGAGTCAGAAGAACGAGTCATCATTCGATTACGTGGAAGGATTCGTGTTTGTCAACAG 955
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 901 AGTAAGTCAGAAGAACGAGTCATCGTTCGATTACGTGGAAGGATTCGTGTTTGTCAACGG 960
Query 956 TGATGACCCGGTTAACGGATGGCCAACAGTTCCGCTCCACCCAGACCACGAGTTTGACCC 1015
|| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 961 TGCTGACCCGGTTAACGGATGGCCAACAGTTCCCCTCCACCCGGACCACGAGTTTGACCC 1020
Query 1016 GACCCGGCTTCCACAATCTTCCGGGTCGGTTCTTTATTGCCTCGAACTCGGTCTTCACTA 1075
|||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GACCCGACTACCACAATCTTGCGGGTCGGTTCTTTATTGCCTCGAACTCGGTCTTCACTA 1080
Query 1076 CAGAGACTCCGATTCCAACTCAACCGTCGACAAGAGGGTGGAGAGATTGATCGGACGGCT 1135
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1081 CAGAGACTCCGATTCCAACTCAACCATTGACAAGAGGGTGGAGAGATTGATCGGACGGCT 1140
Query 1136 AAGATTTAATGAAGGATTAAGATTCGAGGTAGATCTGCCTTACGTTGACTTTTTACTTCG 1195
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1141 AAGATTTAATGAAGGATTAAGATTCGAGGTAGATCTGCCGTACGTTGACTTTTTACTACG 1200
Query 1196 AGTCAAACGGTCTGAAGAAATCGCGAAGGAGATTGGTACGTGGGAAACGCCGCACCCGTG 1255
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1201 AGTCAAACGGTCAGAAGAAATCGCGAAGGAGAACGGTACGTGGGAAACGCCTCACCCTTG 1260
Query 1256 GCTTAACCTCTTCGTGTCGAAGCGAGACATCGGAGATTTCAATCGGACGGTGTTCAAAGA 1315
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTCAACCTCTTCGTGTCGAAGCGAGACATCGGAGATTTCAATCGGACGGTGTTCAAAGA 1320
Query 1316 ACTTGTCAAGAACGGAGTCAATGGTCCAATGCTGGTGTACCCACTCTTGCGAAGCAGGTG 1375
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 ACTTGTCAAGAACGGAGTCAATGGTCCAATGCTTGTGTACCCACTCTTGCGAAGCAGGTG 1380
Query 1376 GGATGATCGGACGTCCGTGGTTATACCGGAAG--G-AGAGATATTCTACATTGTGGCATT 1432
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1381 GGATGATCGGACGTCCGTGGTTATACCGGAAGAAGGAGAGATATTCTACATTGTGGCATT 1440
Query 1433 GCTGCGGTTCGTGCCGCCGTGTGCGAAAGGCTCATCGGTTGATAAAATGGTAGCTCAAAA 1492
||| ||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||
Sbjct 1441 GCTTCGGTTCGTGCCGCCGTGTGCGAAAGTCTCTTCGGTAGAGAAAATGGTAGCTCAAAA 1500
Query 1493 CCAAGAGATCGTTCATTGGTGTGTCAAAAACGGAATAGATTTCAAATTGTATCTTCCTCA 1552
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1501 CCAAGAGATCGTTCATTGGTGTGTCAAAAACGGAATTGATTACAAATTGTATCTTCCTCA 1560
Query 1553 TTACAAGTCTCAAGAGGAATGGATTCGCCATTTTGGAAACCAATGGTCGAGATTTGTTGA 1612
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1561 TTACAAGTCTCAAGAGGAATGGATTCGCCATTTTGGAAACCGATGGTCGAGATTTGTTGA 1620
Query 1613 TAGGAAATCCATGTTTGATCCCATGGCTATACTTTCACCGGGTCAAAAGATTTTCAATAG 1672
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TAGGAAAGCTATGTTTGATCCCATGGCTATACTTTCACCGGGTCAAAAGATTTTCAATAG 1680
Query 1673 GTCTCCATGACCCCTCCTATTTCtt--tttttCTTCCTTTTCTTATTGtttacttttgta 1730
||||| ||||||||| ||||| || ||||| || ||||||||||| ||||||||||||
Sbjct 1681 GTCTCTTTGACCCCTCATATTT-TTACTTTTT-TTACTTTTCTTATT-TTTACTTTTGTA 1737
Query 1731 tccttgagttttgtggtcttaatgtaatttttgtctgtattttacttttttCCCAAGGaa 1790
| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||
Sbjct 1738 TTCTTGAGTTTTGTGGTCTTTATGTAATTTTT-TCTGTATTTTTCTTTTTTCCCAAG-AA 1795
Query 1791 aaaaaTCAGCTGGtttttt-tAAA-GGTGGTCTA 1822
||||||||||||||||||| |||| ||||| |||
Sbjct 1796 AAAAATCAGCTGGTTTTTTATAAAAGGTGGCCTA 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5