BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489036

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G21910.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   499    5e-141


> AT5G21910.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7240659-7241746 
FORWARD LENGTH=1088
Length=1088

 Score =  499 bits (270),  Expect = 5e-141
 Identities = 298/312 (96%), Gaps = 0/312 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGAGGTTTACTACGTCCTGGAAACTTTTGGCCATAAGCTTGTCGGTACTAGCCGTG  60
            ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct  158  ATGGGGAGGTTTACTACTTCCAGGAAGCTTTTGGCCATAAGCTTGTCGGTACTAGCCGTG  217

Query  61   CTCTCACCTCTCTACATCGACAGATTATCAGAGGAAGATCTAGAAGAGGAAGAAGAACTC  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  CTCTCACCACTCTACATCGACAGATTATCAGAGGAAGATCTAGAAGAGGAAGAAGAACTC  277

Query  121  TTCGGCTTTATGTTTACCCTCTCTCTGCTTCTCCTCTTGTTGATTTTGGCCATTGCCTTG  180
            ||| ||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||
Sbjct  278  TTCAGCTTTATGTTTTCCTTCTCTCTGCTTCTCCTCTTGTTGATTTTAGCCATAGCCTTG  337

Query  181  TCCCTGTATTGTGACCCTAGCTTGACCAGGTTTGATCCTTACTGGATTCACAGGCTATGT  240
            ||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  338  TCCTTGTACAGTGACCCGAGCTTGACCAGGTTTGATCCTTACTGGATTCACAGGCTATGT  397

Query  241  GGTTCGTTTGGTGGATTGCTTGTCATCCTCATCCTTCTTGTTTTCGTCTTGATATGCAAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  398  GGTTCGTTTGGTGGATTGCTTGTCATCCTCATCCTTCTTGTTTTCGTCTTGATATGCAAA  457

Query  301  GCCTCTGATTAG  312
            ||||||| ||||
Sbjct  458  GCCTCTGGTTAG  469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5