BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489037
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21920.1 | Symbols: YLMG2, ATYLMG2 | YGGT family protein | c... 1375 0.0
AT5G21910.1 | Symbols: | unknown protein; Has 30201 Blast hits... 597 6e-170
> AT5G21920.1 | Symbols: YLMG2, ATYLMG2 | YGGT family protein |
chr5:7241201-7242813 REVERSE LENGTH=953
Length=953
Score = 1375 bits (744), Expect = 0.0
Identities = 856/910 (94%), Gaps = 7/910 (1%)
Strand=Plus/Plus
Query 1 AGCTTTGCTACAATGGAGGTTAGTGCGAATGAACCAGCTACGAAAAGCTTGAAACCCTTT 60
|||||||| |||||||||| ||||||||||||||||||| ||||||||||||| || |
Sbjct 37 AGCTTTGCAACAATGGAGGCGAGTGCGAATGAACCAGCTATGAAAAGCTTGAAATCCAAT 96
Query 61 CCTTCAGGACCGATACCGAACTTTTTCGTATCGCTCTCTTCGGCATTTACGCAAACACCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 CCTTCAGGACCGATACCGAACTTTTTCGTATCGCTCTCTTCGGCATTTACGCAAACACCT 156
Query 121 CTTGTGCGTTCGAACAAACCCAATTTGCTACTTCTACCACCAGTTGCAGACTCCGTCAAA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 157 CTTGTGCGTTCGAACAAACCCAATTTGCTTCTTCTACCACCAGTTGCAGACTCCGTCAAA 216
Query 181 TTGATTCAAGACTTCCATCGGTCTCTGGTCTCTGCTACTGAGAAATTCTCAGGG-TTCTT 239
|||||||||||||| |||| ||||||| | ||||||||||||||||| | | || ||| |
Sbjct 217 TTGATTCAAGACTTTCATCAGTCTCTGATTTCTGCTACTGAGAAATT-TAAAGGATTCCT 275
Query 240 TCATTCGCTCGCCTCTAAAAACCCTCTCCTTCAGGAAGCGGTTCGCTTGTCTTCCGAATT 299
||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||
Sbjct 276 CCATTCGCTCGCCTCTAAGAACCCTCTCTTTCAGGAAGCGGTTCGCCTATCTTCCGAATT 335
Query 300 TCGCGTTCTGTGCGACGAGATTCGTTTGAAAAACACTACAAGGGTAAGGTTTGCCATGTC 359
|| | || ||||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 336 TCACATTTTGTGCGACGAGATTCGTTTGAGAAACACTACAAGGGTGAGGTTTGCGATGTC 395
Query 360 TAATCACGGATTTGCCGCGGTTCTGCCTGGAGATTCAGTTGCAGGATTGGTGGTTGCTAA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TAATCACGGATTTGCAGCGGTTCTGCCTGGAGATTCAGTTGCAGGATTGGTGGTTGCTAA 455
Query 420 TGGGTTGATAAATTTCCTCAACATATATAACACCATCCTTGTTGTCCGTCTAGTACTCAC 479
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 456 TGGTTTGATCAATTTCCTCAACATATATAACACCATCCTTGTCGTCCGTCTAGTACTCAC 515
Query 480 CTGGTTCCCGAGTGCTCCTCCTGCCATTGTTAACCCCCTCAGCACTTTATGTGATCCATA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CTGGTTCCCGAGTGCTCCTCCTGCCATTGTTAACCCCCTCAGCACTTTATGTGATCCATA 575
Query 540 CTTGAACATATTCCGGGGATTCATACCGCCTCTTGGAGGATTAGATTTGTCTCCTATTTT 599
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 CTTGAACATTTTCCGGGGATTCATACCGCCTCTTGGAGGATTAGATTTGTCTCCCATTTT 635
Query 600 GGCGTTCCTTGTTCTCAACGCCTTCACCAGCTCGGCTATGGCACTCCCTTGCGAGCTCCC 659
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 636 GGCGTTCCTTGTTCTCAACGCCTTCACCAGCTCGGCTATGGCACTTCCTTGCGAACTCCC 695
Query 660 GCCAGCTGAAGGAGCGGTTTCTCTATCTTCTAGTGAGACAAAGTGGATGAGAAGGAGAAG 719
| ||||||| ||||| ||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 696 GTCAGCTGATGGAGCCGTTTCTCCAGCTTCTAGTGAGACAAAGTGGGTGAGAAGGAGAAG 755
Query 720 GTTGAGCAGCCACAAGGACCACAGACCGAGCTCAGCTTCTATGAACTGAACCTATCTAAA 779
||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 756 GTTGAGCAGCCACAAAGACCACAGACCGAGCTCAGCTTCTATGACCTGAACCTGTCTAAA 815
Query 780 A-ACTCCCCTCTTTTCTGCGCTTCAAATGTAAAATCTACCTTTCTAGTAATTTTATT-CT 837
| | || |||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 816 ATA-TCTACTCTTTTCTGCGCTTCAAATGTAAAATCTACCTTTCGAGTAATTTTATTACT 874
Query 838 TCTGCATCTTTGGATTTCTGAGTTTTTGTATAAATTTTCTTTAGAAAATGAATAAAAGAG 897
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 875 -CTGTATCTTTGGATTTCTGAGTTTT-GTATAAATTTTCTTTAGAAAATGAATAAAAGAG 932
Query 898 TTGTGTTCCT 907
||||||||||
Sbjct 933 TTGTGTTCCT 942
> AT5G21910.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7240659-7241746
FORWARD LENGTH=1088
Length=1088
Score = 597 bits (323), Expect = 6e-170
Identities = 370/392 (94%), Gaps = 5/392 (1%)
Strand=Plus/Minus
Query 518 TCAGCACTTTATGTGATCCATACTTGAACATATTCCGGGGATTCATACCGCCTCTTGGAG 577
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 942 TCAGCACTTTATGTGATCCATACTTGAACATTTTCCGGGGATTCATACCGCCTCTTGGAG 883
Query 578 GATTAGATTTGTCTCCTATTTTGGCGTTCCTTGTTCTCAACGCCTTCACCAGCTCGGCTA 637
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GATTAGATTTGTCTCCCATTTTGGCGTTCCTTGTTCTCAACGCCTTCACCAGCTCGGCTA 823
Query 638 TGGCACTCCCTTGCGAGCTCCCGCCAGCTGAAGGAGCGGTTTCTCTATCTTCTAGTGAGA 697
||||||| |||||||| |||||| ||||||| ||||| ||||||| | ||||||||||||
Sbjct 822 TGGCACTTCCTTGCGAACTCCCGTCAGCTGATGGAGCCGTTTCTCCAGCTTCTAGTGAGA 763
Query 698 CAAAGTGGATGAGAAGGAGAAGGTTGAGCAGCCACAAGGACCACAGACCGAGCTCAGCTT 757
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 762 CAAAGTGGGTGAGAAGGAGAAGGTTGAGCAGCCACAAAGACCACAGACCGAGCTCAGCTT 703
Query 758 CTATGAACTGAACCTATCTAAAA-ACTCCCCTCTTTTCTGCGCTTCAAATGTAAAATCTA 816
|||||| |||||||| ||||||| | || ||||||||||||||||||||||||||||||
Sbjct 702 CTATGACCTGAACCTGTCTAAAATA-TCTACTCTTTTCTGCGCTTCAAATGTAAAATCTA 644
Query 817 CCTTTCTAGTAATTTTATT-CTTCTGCATCTTTGGATTTCTGAGTTTTTGTATAAATTTT 875
|||||| |||||||||||| || ||| ||||||||||||||||||||| |||||||||||
Sbjct 643 CCTTTCGAGTAATTTTATTACT-CTGTATCTTTGGATTTCTGAGTTTT-GTATAAATTTT 586
Query 876 CTTTAGAAAATGAATAAAAGAGTTGTGTTCCT 907
||||||||||||||||||||||||||||||||
Sbjct 585 CTTTAGAAAATGAATAAAAGAGTTGTGTTCCT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5