BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489043
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21970.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 2300 0.0
> AT5G21970.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr5:7261600-7263513 FORWARD LENGTH=1629
Length=1629
Score = 2300 bits (1245), Expect = 0.0
Identities = 1429/1517 (94%), Gaps = 16/1517 (1%)
Strand=Plus/Plus
Query 21 GAAGACAATGAGCACCTTACTATGCC--TGTGTTCCCG-CGCCGTCGAACCTCCGCCGCA 77
|||||||||||||||||| || |||| | |||||||| |||||| | ||||||| ||||
Sbjct 34 GAAGACAATGAGCACCTTGCTCTGCCTTTCTGTTCCCGTCGCCGTTGGACCTCCGTCGCA 93
Query 78 TGGCTTACCGGTCATCTTTCACCTTGCCGTCTAACCATCAAACTCTATTATTCCGCCGCC 137
||| || ||| ||||||||||||| |||| ||||||||| ||||| |||||| |||||||
Sbjct 94 TGGGTTTCCGATCATCTTTCACCTCGCCGCCTAACCATCTAACTCCATTATTTCGCCGCC 153
Query 138 ATACAGTTTAAGGTGCTTAAAGCTGAGCTTTTGATGGGAGGGTTACGATGTTGGCTGCAA 197
||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 154 ATATAGTTTAAGGTGCTTAAAGCTGAGGTTTTGATGGGAGGTTTACGATGTTGGCTGCAA 213
Query 198 TTCTA-C-----GGCAATGCCCACAACT-TGTTTGCGATAATGCCTGAAAGAAACGTTTT 250
||||| | || ||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 214 TTCTACCGGAATGGGAATGCACACAA-TGTGTTTGCGATAATGCCTGAAAGAAACGTTTT 272
Query 251 ATACGGAGAATCCTCTTTGAGGCGGGTATGGGTCAGGTTCATGACCAGTAGCAAGCGTGT 310
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 273 ATACGGAGAATCCTCTTTCAGGCGGGTATGGGTCAGGTTCATGACCAGTAGCAAGCGGGT 332
Query 311 TCAAGATAGGAGCAGGGAAAAGAGAGTCCAAGAGCTCGAAATAGCCACAGAGAAATGGAA 370
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 333 TCAAGATAGGAGCAGGGAAAAGAGAGTCCAAGAGCTCGAAATAGCGACAGAGAAATGGAA 392
Query 371 GATAGCTTCTAAAGTGATTTTCTTGATGGAGGTTTTGAAGGGTGAGCGAGATATGATAAT 430
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 393 GATAGCTTCTAAAGTGATTTTCTTGATGGAGGTGTTGAAGGGTGAGCGAGATATGATAAT 452
Query 431 GACTGTCAGGTCGTTGGAACAGTATAGGAGGCAGATCAATTTGCCTAAACCGCATAAGAT 490
||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 453 GACCGTCAGGTCGTTTGAACAGTATAGGCGGCAGATCAATTTGCCTAAACCACATAAGAT 512
Query 491 CAGTGATTTCATCAGAAAGTCTCCCAAGTTGTTTGAATTGTATAAAGATCAGAGGGGAGT 550
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 513 TAGTGATTTCATCAGAAAGTCTCCGAAGTTGTTTGAATTGTATAAAGATCAGAGAGGAGT 572
Query 551 CTTGTGGTGTGGATTGACAGAGCAAGGGGAAGACTTGTTGGAAGAGCATGAAAAGTTACT 610
||||||||| || ||||||||| ||||||||| |||||||| |||||||| ||||||||
Sbjct 573 CTTGTGGTGCGGGTTGACAGAGGGAGGGGAAGATTTGTTGGACGAGCATGACAAGTTACT 632
Query 611 TGAGGAGAATGGAGACAAGGCTGCAGAACATGTGACTAGGTGTTTGATGATGTCTGTTGA 670
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TGAAGAGAATGGAGACAAGGCTGCAGAACATGTGACTAGGTGTTTGATGATGTCTGTTGA 692
Query 671 TAAGAAGCTTCCATTGGATAAGATTGTTCATTTCCGGAGGGATTTCGGGTTGCCTCTTGA 730
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 693 TAAGAAGCTTCCATTGGATAAGATTGTTCATTTCCGGAGGGATTTCGGGTTGCCGCTTGA 752
Query 731 TTTTAGGATAAACTGGGTGC-ACAAGTTTCCTCAGCATTTTAAAGTTGGGAAGCTTGGAG 789
|||||||||||||||||| | |||| |||||||||||||||||||||| ||| ||||| |
Sbjct 753 TTTTAGGATAAACTGGGT-CTACAATTTTCCTCAGCATTTTAAAGTTGTGAAACTTGGGG 811
Query 790 ATGGAGAAGAGTATCTTGAGCTTGTTTCATGGAATCCAGCTTGGGCTATCACAGAGTTGG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ATGGAGAAGAGTATCTTGAGCTTGTTTCATGGAATCCAGCTTGGGCTATCACAGAGTTGG 871
Query 850 AGAAAAAGACTTTAGGTATAACCGAGGATTGCAAACACAAGCCGGGTATGCTTTCACTAG 909
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 872 AGAAAAAGACTTTAGGTATAACCGAGGATTGCGAACACAAGCCAGGTATGCTTTCACTGG 931
Query 910 CTTTCCCCATGAAGTTTCCTCCGTCGTACAAGAAAATGTACAGGTACAGAGGGAAGATTG 969
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 932 CTTTCCCCATGAAGTTTCCTCCGTCGTACAAGAAAATGTACCGATACAGAGGGAAGATCG 991
Query 970 AACATTTTCAGAAACGATCTTACCTGTCTCCTTATGCCGATGCACGTGGACTCGAAGCTG 1029
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 992 AACATTTTCAGAAACGATCTTATCTGTCTCCTTATGCCGATGCACGTGGACTTGAAGCTG 1051
Query 1030 GTTCAAAGGAATTCGACAAGCGGGCAATCGCTGTTATGCACGAGCTGCTGAGCTTTACAC 1089
|||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||
Sbjct 1052 GTTCAAAGGAATTCGACAAGCGGGCAATTGCTGTTATGCACGAACTGCTTAGTTTTACAC 1111
Query 1090 TCGAGAAGAGATTGGTGACGGATCATCTGACACATTTCAGGAGGGAGTTTGTGATGCCGC 1149
||||||||||||||||||| ||||| || || |||||||||||||||||||||||||| |
Sbjct 1112 TCGAGAAGAGATTGGTGACAGATCACCTAACCCATTTCAGGAGGGAGTTTGTGATGCCAC 1171
Query 1150 AGAAGCTGATGAGGATTTTCTTGAAGCATTGTGGTATCTTCTATGTCTCTGAGAGAGGGA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 AGAAGCTGATGAGGATTTTCTTGAAGCATTGTGGTATCTTCTATGTCTCTGAGAGAGGGA 1231
Query 1210 AGAGATTCAGCGTGTTCTTGACAGAAGGTTACGAAGGGCCAGAGCTGATTGAGAAATGTC 1269
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1232 AGAGATTCAGTGTGTTCTTGACTGAAGGTTACGAAGGGCCAGAGCTGATTGAGAAATGTC 1291
Query 1270 CTTTGATATTTTGGAAAGAGAAGTTACTGAAGTTTACGGGTTACAGAGGAAGGAAGAGAG 1329
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CTTTGATACTTTGGAAAGAAAAGTTACTGAAGTTTACGGGTTACAGAGGAAGGAAGAGAG 1351
Query 1330 ATATTCCAACTTATAGTGATACTTTGGACATGGAAGAGAAAGAATTGCTGGAGAGTGGTT 1389
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1352 ATATTCAAACTTATAGTGATACTTTGGACATGGAAGAGAGAGAATTACTGGAGAGTGGTT 1411
Query 1390 CAGGAGATGAAGATTTGAGGGTTGGATTTGAGAAAgatgatgatgatgatgatgtggtaa 1449
||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 1412 CAGGAGATGAAGATTTGAGTGTTGGATTTGAGAAAGATGGTGATTATGATGATGTGGTAA 1471
Query 1450 cagatgatgatgatgagatggacattggtgaagtgaatgatgcatatgaAGACAATAGCA 1509
||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1472 CAGATGATGATGA-GA--TGGACATTGGGGAAGTGAATGATGCATATGAAGAGAATAGCA 1528
Query 1510 AAGTTTAGACAAAAGTT 1526
|||||||||||||||||
Sbjct 1529 AAGTTTAGACAAAAGTT 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5