BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489043 Length=1526 Score E Sequences producing significant alignments: (Bits) Value AT5G21970.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 2300 0.0 > AT5G21970.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:7261600-7263513 FORWARD LENGTH=1629 Length=1629 Score = 2300 bits (1245), Expect = 0.0 Identities = 1429/1517 (94%), Gaps = 16/1517 (1%) Strand=Plus/Plus Query 21 GAAGACAATGAGCACCTTACTATGCC--TGTGTTCCCG-CGCCGTCGAACCTCCGCCGCA 77 |||||||||||||||||| || |||| | |||||||| |||||| | ||||||| |||| Sbjct 34 GAAGACAATGAGCACCTTGCTCTGCCTTTCTGTTCCCGTCGCCGTTGGACCTCCGTCGCA 93 Query 78 TGGCTTACCGGTCATCTTTCACCTTGCCGTCTAACCATCAAACTCTATTATTCCGCCGCC 137 ||| || ||| ||||||||||||| |||| ||||||||| ||||| |||||| ||||||| Sbjct 94 TGGGTTTCCGATCATCTTTCACCTCGCCGCCTAACCATCTAACTCCATTATTTCGCCGCC 153 Query 138 ATACAGTTTAAGGTGCTTAAAGCTGAGCTTTTGATGGGAGGGTTACGATGTTGGCTGCAA 197 ||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 154 ATATAGTTTAAGGTGCTTAAAGCTGAGGTTTTGATGGGAGGTTTACGATGTTGGCTGCAA 213 Query 198 TTCTA-C-----GGCAATGCCCACAACT-TGTTTGCGATAATGCCTGAAAGAAACGTTTT 250 ||||| | || ||||| ||||| | ||||||||||||||||||||||||||||||| Sbjct 214 TTCTACCGGAATGGGAATGCACACAA-TGTGTTTGCGATAATGCCTGAAAGAAACGTTTT 272 Query 251 ATACGGAGAATCCTCTTTGAGGCGGGTATGGGTCAGGTTCATGACCAGTAGCAAGCGTGT 310 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 273 ATACGGAGAATCCTCTTTCAGGCGGGTATGGGTCAGGTTCATGACCAGTAGCAAGCGGGT 332 Query 311 TCAAGATAGGAGCAGGGAAAAGAGAGTCCAAGAGCTCGAAATAGCCACAGAGAAATGGAA 370 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 333 TCAAGATAGGAGCAGGGAAAAGAGAGTCCAAGAGCTCGAAATAGCGACAGAGAAATGGAA 392 Query 371 GATAGCTTCTAAAGTGATTTTCTTGATGGAGGTTTTGAAGGGTGAGCGAGATATGATAAT 430 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 393 GATAGCTTCTAAAGTGATTTTCTTGATGGAGGTGTTGAAGGGTGAGCGAGATATGATAAT 452 Query 431 GACTGTCAGGTCGTTGGAACAGTATAGGAGGCAGATCAATTTGCCTAAACCGCATAAGAT 490 ||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| Sbjct 453 GACCGTCAGGTCGTTTGAACAGTATAGGCGGCAGATCAATTTGCCTAAACCACATAAGAT 512 Query 491 CAGTGATTTCATCAGAAAGTCTCCCAAGTTGTTTGAATTGTATAAAGATCAGAGGGGAGT 550 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 513 TAGTGATTTCATCAGAAAGTCTCCGAAGTTGTTTGAATTGTATAAAGATCAGAGAGGAGT 572 Query 551 CTTGTGGTGTGGATTGACAGAGCAAGGGGAAGACTTGTTGGAAGAGCATGAAAAGTTACT 610 ||||||||| || ||||||||| ||||||||| |||||||| |||||||| |||||||| Sbjct 573 CTTGTGGTGCGGGTTGACAGAGGGAGGGGAAGATTTGTTGGACGAGCATGACAAGTTACT 632 Query 611 TGAGGAGAATGGAGACAAGGCTGCAGAACATGTGACTAGGTGTTTGATGATGTCTGTTGA 670 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 TGAAGAGAATGGAGACAAGGCTGCAGAACATGTGACTAGGTGTTTGATGATGTCTGTTGA 692 Query 671 TAAGAAGCTTCCATTGGATAAGATTGTTCATTTCCGGAGGGATTTCGGGTTGCCTCTTGA 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 693 TAAGAAGCTTCCATTGGATAAGATTGTTCATTTCCGGAGGGATTTCGGGTTGCCGCTTGA 752 Query 731 TTTTAGGATAAACTGGGTGC-ACAAGTTTCCTCAGCATTTTAAAGTTGGGAAGCTTGGAG 789 |||||||||||||||||| | |||| |||||||||||||||||||||| ||| ||||| | Sbjct 753 TTTTAGGATAAACTGGGT-CTACAATTTTCCTCAGCATTTTAAAGTTGTGAAACTTGGGG 811 Query 790 ATGGAGAAGAGTATCTTGAGCTTGTTTCATGGAATCCAGCTTGGGCTATCACAGAGTTGG 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 ATGGAGAAGAGTATCTTGAGCTTGTTTCATGGAATCCAGCTTGGGCTATCACAGAGTTGG 871 Query 850 AGAAAAAGACTTTAGGTATAACCGAGGATTGCAAACACAAGCCGGGTATGCTTTCACTAG 909 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | Sbjct 872 AGAAAAAGACTTTAGGTATAACCGAGGATTGCGAACACAAGCCAGGTATGCTTTCACTGG 931 Query 910 CTTTCCCCATGAAGTTTCCTCCGTCGTACAAGAAAATGTACAGGTACAGAGGGAAGATTG 969 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | Sbjct 932 CTTTCCCCATGAAGTTTCCTCCGTCGTACAAGAAAATGTACCGATACAGAGGGAAGATCG 991 Query 970 AACATTTTCAGAAACGATCTTACCTGTCTCCTTATGCCGATGCACGTGGACTCGAAGCTG 1029 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 992 AACATTTTCAGAAACGATCTTATCTGTCTCCTTATGCCGATGCACGTGGACTTGAAGCTG 1051 Query 1030 GTTCAAAGGAATTCGACAAGCGGGCAATCGCTGTTATGCACGAGCTGCTGAGCTTTACAC 1089 |||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| Sbjct 1052 GTTCAAAGGAATTCGACAAGCGGGCAATTGCTGTTATGCACGAACTGCTTAGTTTTACAC 1111 Query 1090 TCGAGAAGAGATTGGTGACGGATCATCTGACACATTTCAGGAGGGAGTTTGTGATGCCGC 1149 ||||||||||||||||||| ||||| || || |||||||||||||||||||||||||| | Sbjct 1112 TCGAGAAGAGATTGGTGACAGATCACCTAACCCATTTCAGGAGGGAGTTTGTGATGCCAC 1171 Query 1150 AGAAGCTGATGAGGATTTTCTTGAAGCATTGTGGTATCTTCTATGTCTCTGAGAGAGGGA 1209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1172 AGAAGCTGATGAGGATTTTCTTGAAGCATTGTGGTATCTTCTATGTCTCTGAGAGAGGGA 1231 Query 1210 AGAGATTCAGCGTGTTCTTGACAGAAGGTTACGAAGGGCCAGAGCTGATTGAGAAATGTC 1269 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1232 AGAGATTCAGTGTGTTCTTGACTGAAGGTTACGAAGGGCCAGAGCTGATTGAGAAATGTC 1291 Query 1270 CTTTGATATTTTGGAAAGAGAAGTTACTGAAGTTTACGGGTTACAGAGGAAGGAAGAGAG 1329 |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1292 CTTTGATACTTTGGAAAGAAAAGTTACTGAAGTTTACGGGTTACAGAGGAAGGAAGAGAG 1351 Query 1330 ATATTCCAACTTATAGTGATACTTTGGACATGGAAGAGAAAGAATTGCTGGAGAGTGGTT 1389 |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 1352 ATATTCAAACTTATAGTGATACTTTGGACATGGAAGAGAGAGAATTACTGGAGAGTGGTT 1411 Query 1390 CAGGAGATGAAGATTTGAGGGTTGGATTTGAGAAAgatgatgatgatgatgatgtggtaa 1449 ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 1412 CAGGAGATGAAGATTTGAGTGTTGGATTTGAGAAAGATGGTGATTATGATGATGTGGTAA 1471 Query 1450 cagatgatgatgatgagatggacattggtgaagtgaatgatgcatatgaAGACAATAGCA 1509 ||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1472 CAGATGATGATGA-GA--TGGACATTGGGGAAGTGAATGATGCATATGAAGAGAATAGCA 1528 Query 1510 AAGTTTAGACAAAAGTT 1526 ||||||||||||||||| Sbjct 1529 AAGTTTAGACAAAAGTT 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75300817500 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5