BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489044
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21280.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1441 0.0
> AT5G21280.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:7263994-7265678 REVERSE LENGTH=1173
Length=1173
Score = 1441 bits (780), Expect = 0.0
Identities = 1027/1137 (90%), Gaps = 53/1137 (5%)
Strand=Plus/Plus
Query 1 CTTTCTGTTCTCTTTCCGGAGACATTTG--TAAATCTCATCATCATTCACAATTTACTCG 58
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 12 CTTTCTGTTCTCTTTCCGGAGACATTTGTCTAAATCTCATCATCATTCACAATTTACTCA 71
Query 59 AACAAAGCCTT------GAG-AAAAAATGATCCAAGAGAAGAAGAAACACAGATTAGTGT 111
|||||| |||| ||| |||||||||||||||||||||||||| || |||| |||
Sbjct 72 AACAAAACCTTGAGAAAGAGAAAAAAATGATCCAAGAGAAGAAGAAAAACCTATTAATGT 131
Query 112 CTTTTCAGTGAAAAATCAT-AGTTAAATCTTTAATGGTCAGACCAAACAAGCAAGAACCA 170
||| ||||||||||| ||| | | |||||||||||||||||| |||||||||||||||||
Sbjct 132 CTTCTCAGTGAAAAACCATAACTAAAATCTTTAATGGTCAGATCAAACAAGCAAGAACCA 191
Query 171 CGTGTCTCTGCTACTTATATCCGATCTCTCGTGAAGCAACAACTTACTTCTTCCACCACT 230
|| |||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 192 CGCGTCTCTTCTACTTACATCCGATCTCTCGTGAAGCAACAACTTGCTTATTCCACCACT 251
Query 231 ATG------ACCACCACAAC--C-AC---TGATGGAAGCGGCGGCGGCAAAACGCAAACG 278
||| ||||||||||| | || ||||| ||||||||||| || |||||
Sbjct 252 ATGACCACCACCACCACAACAACAACAAACGATGGTAGCGGCGGCGG---AA---AAACG 305
Query 279 CAAACGCAGACGCACAAGAAACAAGTGAGGAGGCGACTTCACACAAGCCGTCCTTATCAA 338
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CAAACGCAAACGCACAAGAAACAAGTGAGGAGGCGACTTCACACAAGCCGTCCTTATCAA 365
Query 339 GAACGTCTTCTCAACATGGCTGAAGCTCGTCGCGAAATCGTCACCGCTTTAAAACAACAT 398
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GAACGTCTCCTAAACATGGCTGAAGCTCGTCGCGAAATCGTCACCGCTTTAAAACAACAT 425
Query 399 CGTGCTTCCATGAGACAAGCCACGAGGATTCCACCGCCTCAACCACCGCCACC-GC-CA- 455
||||||||||||||||||||||| || || ||||||||||||||||| ||||| | ||
Sbjct 426 CGTGCTTCCATGAGACAAGCCACAAGAATCCCACCGCCTCAACCACCCCCACCACCGCAG 485
Query 456 -C-C---A------C-CT---CAGCCT-CT--AAATCCTCCGGATCCATTTTCTTGGACG 497
| | | | || | |||| || |||||||||||||||||||||||||
Sbjct 486 CCTCTAAATCTTTTCTCTCCGCCGCCTCCTCCTCCTCCTCCGGATCCATTTTCTTGGACG 545
Query 498 AATCCATCTCTCAACTTCCTCCTCCCTAATCAACCCTTAGGTTTAAACCTAAATTTCCAA 557
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 546 AATCCATCTCTCAATTTCCTCCTCCCTAATCAACCCTTAGGGTTAAACCTAAACTTCCAA 605
Query 558 GATTTCAACGActtcatccaaacctcatcaacaacatcttcatcatcatcttcctccact 617
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 606 GATTTCAACGACTTCATCCAAACCTCCTCAACAACATCTTCATCATCATCTTCCTCCACT 665
Query 618 tcatcttcctcatcGTCGATTTTTCCGACGAATCCTCATATCTACTCTTCCCCTTCACCT 677
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TCATCTTCCTCATCCTCGATTTTTCCGACGAATCCTCATATCTACTCTTCCCCTTCACCT 725
Query 678 CCTCCCACCTTCACCACCGCCAATTCAGATTCAGCTCCTCAACCACCGTCTTCCTCCAAT 737
|||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 726 CCTCCCACTTTCACCACCGCCACTTCAGATTCAGCTCCTCAACTACCGTCTTCCTCTAAT 785
Query 738 GGAGAGAACAACGTGATAACGTCAGCTTGGTGGTCAGAGCTCATGATGAAGACGGTGGAG 797
||||| ||||||||| | |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 786 GGAGAAAACAACGTGGTGACGTCAGCTTGGTGGTCAGAACTCATGTTGAAGACGGTGGAG 845
Query 798 CCGGAGATTAAACCGGAGACGGAAGAAGTCGCCGCAGTCGAAGATGACGTGTTTCCAAAG 857
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 846 CCGGAGATTAAACCGGAAACGGAAGAAGTCATCGTAGTCGAAGATGACGTGTTTCCAAAG 905
Query 858 CTAAGTGACGTCATGGAATTCCCTTCGTGGTTAAATCAAACAGAAGAAGAATTATTTCAT 917
| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 906 TTTAGTGACGTCATGGAATTTCCTTCGTGGTTAAACCAAACAGAGGAAGAATTATTTCAT 965
Query 918 CCTTATAATCTCACTGATAATTACTC-T--TCTCCTCATAATCCTCCATTATCCTGTATG 974
|||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 966 CCTTATAATCTCACTGATCATTACTCATCATCTCCTCATAATCCTCCATTATCCTGTATG 1025
Query 975 GAGATTGGAGAAATTGAAGGTATGGATGGAGACGACTGGTTTGCTTGAACCACAAAGATT 1034
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1026 GAGATTGGAGAAATTGAAGGCATGGATGGAGACGACTGGCTTGCTTGAACCACAAAGATT 1085
Query 1035 GATTACTGtttttttttttCAGACATGATGAATCAACTCTTTGGTTCTTTTCTTATT 1091
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1086 GATTACTGTTTTTTTTTT-CAGACATGATGAATCAACTCTTTGGTTATTTTCTTATT 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5