BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489045
Length=2170
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21990.1 | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-li... 3264 0.0
> AT5G21990.1 | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:7273169-7276563 FORWARD LENGTH=2136
Length=2136
Score = 3264 bits (1767), Expect = 0.0
Identities = 2054/2182 (94%), Gaps = 61/2182 (3%)
Strand=Plus/Plus
Query 1 CCGGTCGGTGAATTGAGGAGGTTGAGCGATAAATTTTCCAATTTTGATTTCTATATTATT 60
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1 CCGGTCGGTGAATTGAGGAGGTTGAGCGATAAATTTTCCAA-TTCGA-TTCTATATTATT 58
Query 61 CGAAAGTACTTTCGGGTTGGCTAAACAATTCTCCTTCGATTTTCCGATTCACACAAACTC 120
|||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 59 GGAAACTACTTTCGGGTCGGCAAAACAATTCTCCTTCGATTTTCCGATTCTCACAAACTC 118
Query 121 AATCTCGATCCAGATTCCGAGCTTATCCTTCTCCGGCGAATTTCGA-TTTGTGT-TTTCC 178
||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||
Sbjct 119 AATCTCGATCCAGATTCCGAGCTTATCCTTCTCTGGCGAATTTCGATTTTCTGTGTTTCC 178
Query 179 GATCTGATTACAGAGAACCACATCGAAGCTTCCAG----AAAAA-ACGATGTTTAACGGA 233
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 179 GATCTGATTACAGAGAACCACATCGAAGCTTCGAGAAAAAAAAACACGATGTTTAACGGG 238
Query 234 TTAATGGATCCTGAGATGATTCGTCTTGCTCAAGATCAGATGAGCCGTATGACTCCTGCT 293
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 239 TTAATGGATCCTGAGATGATTCGGCTCGCTCAAGATCAGATGAGTCGTATGACTCCTGCT 298
Query 294 GATTTCGCTAGGATCCAACAACAGATGATGTCAAATCCAGATTTGATGAATATGGCAACG 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GATTTCGCTAGGATCCAACAACAGATGATGTCAAATCCAGATTTGATGAATATGGCAACA 358
Query 354 GAGAGTATGAAGAACATGAGGCCTGAAGATTTGAAACAAGCTGCTGAACAGCTTAAGCAT 413
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 GAGAGTATGAAGAACATGAGGCCTGAAGATTTGAAACAAGCTGCGGAACAGCTTAAGCAT 418
Query 414 ACACGGCCTGAAGATATGGCTGAGATTAGCGAGAAGATGGCGAAAGCTTCCCCTGAAGAT 473
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 ACTCGGCCTGAAGATATGGCTGAGATTAGCGAGAAGATGGCTAAAGCTTCCCCTGAAGAT 478
Query 474 ATTGCAGCTATGCGTGCTCATGCTGATGCTCAGTTCACTTATCAAATCAATGCAGCTCAG 533
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 479 ATTGCAGCTATGCGTGCTCATGCTGATGCTCAATTTACTTATCAGATCAATGCAGCTCAG 538
Query 534 ATGCTTAAACAACAGGGAAACGAGCTTCATAGCCGAGGAAATTTCAGTGATGCTGCTGAG 593
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 539 ATGCTTAAAAAACAGGGAAACGAGCTTCATAGCCGAGGAAATTTCAGCGATGCCGCAGAG 598
Query 594 AAATATTTGCGTGCGAAGAACAATCTGAAAGACATTCCATCTTCTAAAGGTGGAGCACTT 653
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 599 AAATACTTGCGTGCGAAGAACAATCTGAAAGAGATTCCATCTTCTAAAGGTGGAGCAATT 658
Query 654 TTGTTGGCTTGTTCTCTCAATCTAATGTCTTGTTATTTGAAGACGAATCAGCATGAAGAG 713
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 TTGTTGGCTTGTTCTCTCAATCTAATGTCGTGTTATTTGAAGACGAATCAGCATGAAGAG 718
Query 714 TGCGTAAAGGAAGGTTCTGAGGTTTTGGCATCTGATGCAAGGAATGTCAAAGCCCTATAC 773
||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 719 TGCATAAAGGAAGGTTCTGAGGTTTTGGGATATGATGCAAGGAATGTCAAAGCCCTATAC 778
Query 774 AGAAGGGGTCAAGCTTACAGAGATCTAGGCTTGTTTGAAGATGCCGTCTCTGATCTAAGC 833
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 779 AGAAGGGGTCAAGCTTACAGAGATTTGGGCTTGTTTGAAGATGCCGTCTCTGATCTAAGC 838
Query 834 AAGGCCCATGAAGTTTCCCCAGAAGATGAGACAATTGCCGATGTGCTAAGAGATGTTAAG 893
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 AAGGCCCATGAAGTTTCCCCAGAAGATGAGACAATTGCCGATGTGTTAAGAGATGTTAAG 898
Query 894 GAAAGATTGGCTGTCGAGGGGCCTGGCAAGGCATCAAGAGGTGTGGTGATTGAAGACATA 953
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAAGATTGGCTGTCGAGGGACCTGGCAAGGCATCAAGAGGTGTGGTGATTGAAGACATA 958
Query 954 ACTGAAGAAAATAATGTTACTTCCGGAGGGAATaaaaaaaCCTCTAAAGAGGTTACTGGG 1013
|||||||||||||||||||||||||||| |||| |||||| | | | |
Sbjct 959 ACTGAAGAAAATAATGTTACTTCCGGAGAGAAT-AAAAAA-C-C-------G----T--- 1001
Query 1014 ACACAACGAGAAGGAAATGTTAATGGTCATGCTCAGGGCGTAAAGACTGATGTTGATGGA 1073
|| || || | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 -CA-AA--AG-A-G----GCTAATGGTCATGCTCAGGGCGTAAAGACTGATGTTGATGGA 1051
Query 1074 TTGCAGGCTCTCAAAGATAATCCAGAAGCAATCAGAACTTTCCAGAACTTCATTTCAAAA 1133
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1052 TTGCAAGCTCTCAGAGATAATCCAGAAGCAATCAGAACTTTCCAGAATTTCATTTCAAAA 1111
Query 1134 ACTGATCCCGATACACTTGCTGCTCTGAGCGGAGGCAAAGCTGGAGACATGTCACCGGAC 1193
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1112 ACTGATCCCGATACACTTGCTGCTCTAAGCGGAGGCAAAGCTGGAGACATGTCACCGGAC 1171
Query 1194 ATGTTCAAAACTGCGTCGAGTATGATAGGCAAAATGTCACCTGAAGAGATTCAAAAAATG 1253
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ATGTTCAAAACTGCGTCAAGTATGATAGGCAAAATGTCACCTGAAGAGATTCAAAAAATG 1231
Query 1254 GTTCAAACAGCCTCTTCGTTTAAAGGAGATAACCCTTTCGCCCCAACTGCGCCATCTACA 1313
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1232 GTTCAAACAGCCTCTTCGTTTAAAGGAGATAACCCTTTCGCCCCGACTGCGCCATCTACC 1291
Query 1314 GAAAACGGTTTTACACCCACACCTGACATGCTTAAACTTGCATCTGATATGATGAGTAAG 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1292 GAAAACGGTTTTACACCCACACCTGACATGCTTAAACTTGCATCTGATATGATGGGTAAG 1351
Query 1374 ATGTCACCAGAAGAGCGTGAGAGGATGTTTAACATGGCATCGTCTTTGAAAGCAAACGCT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 ATGTCACCAGAAGAGCGTGAGAGGATGTTTAACATGGCATCGTCTTTGAAAGCAAACGCT 1411
Query 1434 CCAGCTTCAACATCATATGGAAATGCAGAAGCATCTGAACCACGGGAAAGTTTAGGAGCG 1493
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1412 CCAGCTTCAACATCATACGGCAATGCAGAAGCATCTGAACCACGGGAAAGTTTAGGAGCG 1471
Query 1494 GGTGGGAGTTCTTCGGGAAATTCCTTTGTGGCTCCAAGAAGCGGTTTCGAACCAAGCATC 1553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 AGTGGGAGTTCTTCGGGAAATTCCTTTGTGGCTCCAAGAAGCGGTTTCGAACCAAGCATC 1531
Query 1554 CCTTCTGCTCCGCCTGCTGACTTGCAGGAACAGATGAGAAACCAAATGAAAGATCCAGCG 1613
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1532 CCTTCTGCTCCGCCTGCTGACTTACAGGAACAGATGAGAAACCAAATGAAAGATCCAGCG 1591
Query 1614 ATGCGACAGATGTTCACATCTATGATAAAGAACATGAACCCAGAGATGATGGCTAGCATG 1673
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1592 ATGCGACAGATGTTCACGTCTATGATAAAGAACATGAACCCTGAGATGATGGCTAGCATG 1651
Query 1674 AGCGAACAATTCGGAATGAAGCTTTCTCAAGAAGATGCTGCAAAAGCTCAGCAAGCCATG 1733
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1652 AGCGAACAATTTGGAATGAAGCTTTCTCAAGAAGACGCTGCAAAAGCTCAGCAAGCCATG 1711
Query 1734 GCTTCTCTTTCTCCCGACGCCTTGGAGAAAATGATGCGATGGGCGGATCGGGCTCAAACC 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 GCTTCTCTTTCTCCCGACGCCTTGGAGAAAATGATGCGATGGGCGGATCGGGCTCAAACC 1771
Query 1794 GGGATGGAGAAAGCGAAGAAAGCAAAGAAGTGGTTACTCGGAAAAGGCGGATTGATCTTT 1853
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1772 GGGATGGAGAAAGCGAAGAAAGCAAAGAAGTGGTTGTTCGGAAAAGGCGGATTGATCTTT 1831
Query 1854 GCTATATTAATGCTCGTTTTGGCAATGATCCTTCACCGTCTCGGCTATATTGGAAACTAG 1913
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1832 GCAATATTAATGCTCGTTTTAGCAATGGTCCTTCACCGTCTCGGCTATATTGGAAACTAG 1891
Query 1914 AGGAAACAACGGTATCTTAAGGCTTAATTAATAATACCTTCGTGAAGACCAGACCAGTCT 1973
|||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 1892 AGGAAACAACGGTATCTTAAGGCTTAAT--------CCTTCGTGAAGATAAAACCAGTCT 1943
Query 1974 TCGGTGGGTTCGT--AGTTTGTAAAACTGTAACATCGTTT-ATCTTCTTTTTCTTTCCTC 2030
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1944 TCGGTGGGTTCGTTTAGTTTGTAAAACTGTAACATCGTTTTATCTTCTTTTTCTTTCCTC 2003
Query 2031 TAACTCTCGGCTTTTTGTTGGTCCACTTGTGTCTAAATTTCTTCACACTTTCTTCTGTAG 2090
|||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2004 TAACTCTCAGCTTTTTGTTAGTCCACTTGTGTCTAAATTTCTTTACACTTTCTTCTGTAG 2063
Query 2091 TG--ttttaaaattagaaaaaatacgattatttcctttttagatattcgttatttttatt 2148
|| ||||||| ||||| ||||||||| ||||||||| | ||||||||||||| ||
Sbjct 2064 TGAATTTTAAA-TTAGAGAAAATACGAATATTTCCTT---A--TATTCGTTATTTT-AT- 2115
Query 2149 ttataaaCATAATTATTCTTCT 2170
| || ||||||||| |||||
Sbjct 2116 --A-AA-CATAATTATGCTTCT 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107629968480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5