BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489047
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22000.2 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277322... 2453 0.0
> AT5G22000.2 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277322-7280255
FORWARD LENGTH=1729
Length=1729
Score = 2453 bits (1328), Expect = 0.0
Identities = 1548/1648 (94%), Gaps = 40/1648 (2%)
Strand=Plus/Plus
Query 110 ATGAATCTAGGGTTTTGTTTTCTCCCACAACCCTAGATTTTC-T---TC---C------- 155
||||||||||||||||||||||||||| |||||||||||||| | || |
Sbjct 1 ATGAATCTAGGGTTTTGTTTTCTCCCATAACCCTAGATTTTCTTCCATCAATCTTATATT 60
Query 156 --TCTCATTTCTTCTTCTCCGTTTTAGCTCATCTTCCGATTCATCGCGATTTCCATGGAG 213
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 61 TTTCTCATTTCTTCTTCTCCGTTTTAGCTCATCTCCCGATTCATCTCGATTTCCATGGAG 120
Query 214 G-GAGCGGGAGATACGACGACGTCGGAGGGGCATTTGACTTCGGCAGCAGCTTTTGTTGA 272
| || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GTTAG-GGTTTCCACGACGACGTCGGAGGGGCATTTGACTTCGGCAGCAGCTTTTGTGGA 179
Query 273 AGGGGGAATTCAAGATGCTTGTGATGATGCTTGTAGCATTTGTCTTGAATCCTTCTGCGA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGGGGAATTCAAGATGCTTGTGATGATGCTTGTAGCATTTGTCTTGAATCCTTCTGCGA 239
Query 333 AAGCGATCCATCCACTTTGACTAGTTGCAAGCATGAGTATCATCTTCAATGCATTCTTGA 392
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGCGATCCTTCTACTTTGACTAGTTGCAAGCATGAGTATCATCTTCAATGCATTCTTGA 299
Query 393 ATGGTGTCAAAGAAGCTCACAGTGCCCAATGTGTTGGCAATCAATTAGTCTCAAAGACCC 452
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GTGGTGTCAAAGAAGCTCACAGTGCCCTATGTGTTGGCAATCAATTAGTCTCAAAGACCC 359
Query 453 CACAAGTCAGGAGTTGCTTGAGGCTGTTGAACAGGAGAGGAACTTCCGCTTCAATCCATC 512
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 360 CACAAGTCAGGAGTTGCTTGAGGCTGTGGAACAGGAGAGGAATTTCCGCTTCAATCCAAC 419
Query 513 TAGAAATGCCACCATATTTCGTCACCCCACTCTTGGTGATTTTGAATTACAACATCTGCC 572
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 420 TAGAAATGCCACCATATTTCGTCATCCAACTCTTGGTGATTTTGAATTACAACATCTTCC 479
Query 573 AGTGGGGGTTGATAATGCAGAGATTGAAGAACGAATCATTCAGCACTTGGCTGCTGCTGC 632
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTGGGGGTGGATAATGCTGAGATTGAAGAACGAATCATTCAGCACTTGGCTGCTGCTGC 539
Query 633 TGCTATGGGACGAGCAAGACATGGGGTAAGAAGGGAAGGCCACAGAAGCAGGTCGTCAAG 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCTATGGGACGAGCAAGACATGGGGTAAGAAGGGAAGGCCACAGAAGCAGGTCGTCAAG 599
Query 693 TCAAGGACATCCACAGTTTATGGTGTTCTCTTCACATCCTAATGCTTCTTCTCCTCCACC 752
||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 600 TCAAGGACATCAACAGTTCATGGTGTTCTCTTCGCAACCTAATGCTTCTTCTCCTCCACC 659
Query 753 TCATCCTCCCATGCCTTCTTCTCCATCTCAGAGAGATGAGAGTGACACAGTCTCAAACCT 812
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TCATCCTCCCATGCCTTCTTCTCCATCTCAGAGAGATGAGAGTGACACAGTGTCAAACCT 719
Query 813 TCCTCACAATACCTTAGGGGAGGGTTCTCATCAGTCAAACACGCAGCCACCAACTTCTTC 872
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCCTCACAATGCTTTAGGGGAGGGTTCTCATCAGTCAAACACGCAGCCACCAACTTCTTC 779
Query 873 TCATCCCCGCCAGGTTTCTCCTTCGGCATCTGATTCAAACAGCAGGCCTGTTAATCAATC 932
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 780 TCATCCCCGCCAGGTTTCTCCCTCAGCATCTGATTCAAACAGCAGGCCTCTTAATCAATC 839
Query 933 TTCCCCAAGTGATCAAGATAGAGCTGGACCATCAGAACTCCAGTCATTTTCGGAATCACT 992
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCCCCAAGTGAACAAGATAGAGCTGGACCATCAGAACTCCAGTCATTTTCGGAATCACT 899
Query 993 AAAGTCTCGATTAAACGCTGTCTCCACGAGATACAAAGAATCGATATCAAAGAATACAAG 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TAAGTCTCGATTAAACGCTGTCTCCACGAGATACAAAGAATCGATATCAAAGAATACAAG 959
Query 1053 GAACTGGAAAGATAGACTTTTTTCTCGCAACACTTCCATGGCTGATCTTGGCTCTGAGGT 1112
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 960 GAACTGGAAAGATAGACTTTTTTCTCGCAACACGTCCATGGCAGATCTTGGCTCTGAGGT 1019
Query 1113 TAAAAGAGAGGTCAGCGCCGGAATCGCCACTGTGTCCCGCATGATGGAACGTCTAGAAAC 1172
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 TAAAAGAGAGGTCAGTGCCGGAATCGCCACTGTGTCCCGCATGATGGAACGTTTAGAAAC 1079
Query 1173 GAGAGAAAACAGTAGACCCAGCACTGCATCTGTATCAGATGTCTCTGAAAATCACACCCC 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 GAGAGAAAACAGTAGACCCAGCACTGCATCTGTATCAGATGTCTCTGAAAATCACACTCC 1139
Query 1233 TGAATCAAACAATGAGCATAATAATAGATCAGAAGCGGATGATGAACATTCTATGAATGA 1292
|||| ||||||||||||| |||| || ||| ||||| ||||||||||||| |||||||
Sbjct 1140 TGAAACAAACAATGAGCACAATAG-AG--CAGCAGCGGGTGATGAACATTCTGTGAATGA 1196
Query 1293 AAGAGGTGTTAAAGAAACATGTGCGACTGGTTCTGGTTCAAGCTAATAAGCAAGTGCCAG 1352
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1197 AAGAGGTGTTAAAGAAACATGTGCGACTGGTTCTGGTTCAAGCTAATAAGTGAGTGCCAG 1256
Query 1353 CACCTTGTTGGCACAGAGAGAGGAAGATGTTGTCCATTGTGAAATTCTGATAATATATAT 1412
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CATCTTGTTGGCAAAGAGAGAGGAAGATGTTGTCCATTGTGAAATTCTGATAATATATAT 1316
Query 1413 ATAAACAGAGTCGGAAGTCTCAAAAGTGTGGGAGCATAGGAAGAAGGTT-T-ATTGATAA 1470
||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 1317 ATA--CAGAGTCAGAAGTCTCAAAAGTGTGG-AGCATAGGAAGAAGGTTATTATTGATAA 1373
Query 1471 CATAAAA-GAGTTTTCTGATTCTCAATAAATAAGAAAAAGGTTATATATGACCAAAAGTA 1529
| |||| |||||||| |||| |||||||||||||||| | ||||||||||||||||| |
Sbjct 1374 -AGAAAAAGAGTTTTCCGATTATCAATAAATAAGAAAA-G-TTATATATGACCAAAAGGA 1430
Query 1530 GGCCTTAA-GACGCCTGCTT-CTGTGTTGTGTCAAACAAACGaaaaaaaaaCTAAAGAGA 1587
|||||||| ||||||| ||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1431 GGCCTTAAAGACGCCT-CTTTCTGTGTTATGTCAAACAAACAAAAAAAAAACTAAAGAGA 1489
Query 1588 GAAAAT-AGAGTAAA-GAC-TATGTGGG-TTGTTGGTTATTTGGTCGGTCTGTTGTAAAT 1643
||||| |||||||| ||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 1490 -AAAATTAGAGTAAAAGACCTGTGTGGGGTTGTTGGTTATTTGGTCGGTCTGTTGTAAAT 1548
Query 1644 TCA--TTGTCGTTCACATTACGGATTTATATGAATTTCTACTTATGTATCTTCAAAAACT 1701
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1549 TCACATTGTCGTTCACATTACGGATTTCTATGAATTTCTACTTATGTATCTTCAAAAACT 1608
Query 1702 TGGCCTAGCAAAACCAATTTGATGTATC 1729
||| |||||||||||||||| |||||||
Sbjct 1609 TGGTCTAGCAAAACCAATTTAATGTATC 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87499549935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5