BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489055
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22040.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1543 0.0
> AT5G22040.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7296999-7299042
REVERSE LENGTH=1081
Length=1081
Score = 1543 bits (835), Expect = 0.0
Identities = 997/1071 (93%), Gaps = 28/1071 (3%)
Strand=Plus/Plus
Query 1 TTCTTCTTCCGCTTGAGTGGCTTCGGGTCAGATTTGAGAGGAAGTAAAAATGAGAAGACA 60
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 23 TTCTTCTTCCGCTTGAGTGGCTTCGGGTCAGATTTAAAAGGAAGTAAAAATGAGAAGACA 82
Query 61 GGGAAACTTTGCGGA--C-TCACCTGCCAGTGCATATGGAGCTGGACAGATACAGGA-CG 116
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 83 GGGAAACTTTGCGGACTCATCACCTGCCAGTGCATATGGAGCTGGACAGATACAGGATC- 141
Query 117 CCCATTCTGATTTCCAAGGTCAATTAGAGGCATTCACGCCTGAGAGGGATCAGCCATATT 176
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CCCATTCTGATTTTCAAGGTCAATTAGAGGCATTCACGCCTGAGAGGGATCAGCCATATT 201
Query 177 CAGATTCACAAGCAGAGGGTCAATGGAGATGGGAAAGAGATGGCCCAAATATGTCAAGGC 236
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 202 CAGATTCACAAGCTGAGGGTCAATGGAGATGGGAAAGAGATGGCCCTAATATGTCAAGGC 261
Query 237 CAATGGCTACTGCCGTTTACAATGAAGGACAACAAGGTGTTGATTCATCGAGGGCGTATT 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 262 CAATGGCTACTGCTGTTTACAATGAAGGACAACAAGGTGTTGATTCATCGAGGACGTATT 321
Query 297 ACCGTGGCCAAATGGATCCAAAATCAGGAATGGAGAAGCAAGGCAGCGATACC-AGAACT 355
||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||| ||
Sbjct 322 ACCGTGGCCAAATAGATCCAAAATCAGGAATGGAGAAGCAAGGCAGTGAT-CCAAGAGCT 380
Query 356 CAACCACAACACCAAGAAAATCCAAAGACTGGTTATGATAATAACCGTGGGGTGCAGACA 415
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 381 CAACCACAACACCAAGAAAATCCAAAAACCGGTTATGATAATAACCGTGGGGTGCAGACA 440
Query 416 TTTGAAGGTCTTGAACAGAAGTTCATGGATGATATAACAAGACTAGCAAAAGATCAGATT 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 441 TTTGAAGGTCTTGAACAGAAGTTCATGGATGATATAACAAGACTAGCAAAAGATCAAATC 500
Query 476 GAAGCAGAGGATGCAGAGATTGCTAGACATCGAGAGAAAATAAACACCATAAATACTCGA 535
|||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||
Sbjct 501 GAAGCAGAGGATGCAGAGATCGCCAGACATCGAGAGAAAATAAACACTATAAACGCTAGA 560
Query 536 TACGAAGAACAGTTAGCTACACTCAGAGCACGACACACAGGTAAGAGAGAAGAGATCATG 595
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 561 TACGAAGAACAGTTAGCTACACTTAGAGCACGGCACACAGGTAAGAGAGAAGAGATCATG 620
Query 596 AGAAAAGAATCACAAGCTAGGCAGCAACAATACAAGCAGCAAACCATGGGGATGATGGAA 655
|| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 621 AGGAAAGAATCACTAGCTAGGCAGCAACAATTCAAGCAGCAAACCATGGGGATGATGGA- 679
Query 656 CCG-TACCATCCAAACGCGGTTGGTCCAG-CCAATCTAATGCCATCTGGTCATCCCCAAG 713
|| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 680 CCAATACCATCCAAACGTGGTTGGTC-AGGCCAATCTAATGCCATCTGGTCATCCCCAAG 738
Query 714 GTTACATTGGCAATGCGCAAGATCCAGCGGCTGTAGCGGATGCACCATCAAGATCATATG 773
| |||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 739 GCTACATTGGCAGTGCTCAAGATCCAGCGGCTGTGGCGGATGCACCACCAAGATCATATG 798
Query 774 GCTCAGATCGGTTTGAAGCATACGGAGAGAGAGCTAGGTTTCAGGGCGGAAATAGAGATC 833
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 799 GCTCAGATCGGTTTGAAGCATACGGAGAGAGAGCTAGGTTTCAGGGAGGAAACAGAGATC 858
Query 834 ACGGGTTCGAGCCTAGGGGTC-AGTACCCTGGTGGGACCGTCTACGACACT-GCCTCACG 891
||||||||||||||||||||| | ||||||||||||| ||||| ||||| || |||||
Sbjct 859 ACGGGTTCGAGCCTAGGGGTCCA-TACCCTGGTGGGAATGTCTATGACACCAGC-TCACG 916
Query 892 GTTCTACTGATGTGATATTTACTTGAACATAATGTGTTCTAGGGGATTCACTC-C-CACT 949
||||||||||||||||||| ||||||||||| |||||| |||||||||||||| | | |
Sbjct 917 GTTCTACTGATGTGATATT-ACTTGAACATATTGTGTTTTAGGGGATTCACTCACTCCCA 975
Query 950 CtttttttG-G-CTTTATAGATaaaaaaaTTAAGCTTTTCAGACTATCCGGAATTTGCAA 1007
||||||||| | |||||||||| |||| | |||||||||||||||||||||||||| ||
Sbjct 976 CTTTTTTTGTGGCTTTATAGATCAAAA--TCAAGCTTTTCAGACTATCCGGAATTTGAAA 1033
Query 1008 ATGAAATCAGGGTTCCtttttttttttttAATCCTGACGAGAGCATTTTAG 1058
|||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1034 ATGAAATCAGGGTTCCATTTTTT------AATCCTGACGAGAGCATTTTAG 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51806962440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5