BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489056
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22050.2 | Symbols: | Protein kinase superfamily protein | ... 1751 0.0
> AT5G22050.2 | Symbols: | Protein kinase superfamily protein
| chr5:7301231-7303418 FORWARD LENGTH=1369
Length=1369
Score = 1751 bits (948), Expect = 0.0
Identities = 1104/1175 (94%), Gaps = 27/1175 (2%)
Strand=Plus/Plus
Query 116 CgagagagagagagagagaAAGATATACAAGCTCCTCGTGAAGCAGCCAGCAGTGAAG-A 174
|||| |||||||||||| ||||||||| |||| ||||||||||| | |||||||| |
Sbjct 165 CGAGTGAGAGAGAGAGACAAAGATATA-GAGCTTCTCGTGAAGCA---A-CAGTGAAGAA 219
Query 175 AAGGAAAGTGAATCGCCAGCCATGGATGATCGCCTTCGCTTAAGCCGCAGAATCCGCTTT 234
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 AAGGAAAGTGAAT---C-GCCATGGATGATCGCCTTCGCTTAAGCCGCAGAATCCGCTTT 275
Query 235 CGTCTTCTTGCTTGGCTCCGTCGTTCTCGCTCCGGAAGAATAGAATTTATCAGACGATTT 294
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 276 CTTCTTCTTGCTTGGCTCCGTCGTTCTCGCTCCGGAAGAATAGAGTTTATCAGACGATTT 335
Query 295 GGTTACAAGGAAATTATCAAAGCAACACAAGGCTTT-CGTAAGGTTATTTACACCAACTA 353
|| ||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 336 GGATACAAGGAAATAATCAAAGCAACAGAAGG-TTTCCGTAAGGTTATTTACACCAACTA 394
Query 354 TCACGGCTCTGCATACAGAGCTAAATTCAAAGGTGGTGAGGTAGCTTTGGTCAAAGAACT 413
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 395 TCACGGGTCTGCATACAGAGCTAAATTCAAAGGTGGTGAGGTTGCTTTGGTCAAAGAACT 454
Query 414 TAATGCCCTTGATCTTGGACGAGAAAGGTTTGATGAGGAAGTGCAGCTATTGGGTCGCTT 473
| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 455 CACTGCTCTTGATCTTGGACGAGAAAGGTTTGATGAGGAAGTTCAGCTTTTGGGTCGCTT 514
Query 474 ACGTCACCGTCATCTCCTTACACTTCGCGGCTTTTGCATTGGACGAAAGAGGCTTCTAGT 533
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 515 ACGTCACCGTCATCTCCTTACACTTCGTGGGTTTTGCATTGGACGAAAGAGGCTGCTAGT 574
Query 534 GTTTGACAACATTGAAAATGGAAGCTTGAAAGAACACCTCAATGATCCTCTTAAGACCCC 593
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 575 GTTTGACAACATTGAAAATGGAAGTTTAAAAGAACACCTCAATGATCCGCTTAAGACTCC 634
Query 594 TTTGAATTGGAAGACTCGCATTCAGATAGCCATTGGAGTCGCAGCTGCATTAGAATACTT 653
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 635 TTTAAATTGGAAGACTCGCATTCAGATAGCTATTGGAGTCGCAGCTGCATTAGAATACTT 694
Query 654 GCTAATCTTCAGCAGTAATGATGCACAGATATATGATGTTTCAGTGAACTCATGTAACAT 713
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GCTAGTCTTCAGCAGTAATGATGCACAGATATATGATGTTTCAGTGAACTCATGTAACAT 754
Query 714 CATGTTGGATGAAAACTTCACCCCTAAAATTTCAGATATCCGCGTCAACAGACATCCAAA 773
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 755 CATGTTGGATGAAAACTTCACCCCCAAAATTTCAGATATCCGCGTCAACAGACATCCAAA 814
Query 774 AAACCATCCCAAAGCAACCCATGATTCTTGCTCTGAAGGATCATGTGCGGATGAGGAATG 833
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 815 AAACCATCCGAAAGCAACCCATGATTCTTGTTCTGAAGGATCATGTGCGGATGAGGAATG 874
Query 834 TGGAAACGTGATATTTCAACTAGGAGTGTTGATGTTGGAGCTGATCACAGGACAGTCATC 893
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 875 TGGAAACGTGATATTCCAACTAGGAGTGTTGATGTTGGAGCTGATCACAGGACAATCATC 934
Query 894 AGACAGACAAGGGAAAGACTTGATCGAATGGGTACAAGACTCGTGTATTGCAAATTCCAT 953
|||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 935 AGACAGACAAGGCAATGACTTGATCGAATGGGTACAAGACTCGTGTATTGCAAACTCAAT 994
Query 954 TGATAAGATGATTGATCCAGATTTAGGTAACAACTATAGCTCTAGAGAACTCCAGAAAGT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TGATAAGATGATTGATCCAGATTTAGGTAACAACTATAGCTCTAGAGAACTCCAGAAAGT 1054
Query 1014 CTTAGCCGTGGCTCGACTCTGCATAAAAACGAGGTATGAGCCTCCTTCATTCTCAATTAC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 CTTAGCCGTGGCTCGACTCTGCATAAAAACGAGGTATGAGCCTCCTTCATTCTCAATTAC 1114
Query 1074 ACATGTATACCGGTATCTACAGAAGAAGATCGATGTTGCAACATAAATACTAGTTTTTGT 1133
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 1115 ACATGTATACCGGTATCTACAGAAGAAGATCGATGTTGCAACTTGAATACTAGTTTTTTT 1174
Query 1134 TT-GTGAATTGAATTGGGTTTGATGGTTGAAATTGAGATGACATGTGGTTCATCATCCGT 1192
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1175 TTTGTGAATTGAATTGGGTTTGATGGTTGAAATTGAGATGACATGTGGTTTATCATCCTT 1234
Query 1193 ATTAAGT-TTTCTGCCTATTTTCACACCATTCTAGATGTAATGT-AGC--AT--TGTA-- 1244
||| ||| ||| |||||||||| ||||||||||||||||||| ||| || ||||
Sbjct 1235 ATTTAGTCTTT-TGCCTATTTTTACACCATTCTAGATGTAATAACAGCTTATAGTGTAGT 1293
Query 1245 --C-TTGT-CTTG-CTTGATATAACTTTTGATATT 1274
| |||| |||| |||||||||||||||||||||
Sbjct 1294 AGCATTGTACTTGTCTTGATATAACTTTTGATATT 1328
Score = 124 bits (67), Expect = 2e-27
Identities = 101/116 (87%), Gaps = 7/116 (6%)
Strand=Plus/Plus
Query 1 AAAAAAGACGTGAGATTGATTTTACAGCTCAGGCAAAGAAAGCTTTCGTACAACTGACAG 60
||||||| |||||| ||||| |||||||||| | | ||||||||||||||||||||
Sbjct 19 AAAAAAGGCGTGAGGTTGATATTACAGCTCA-G-AGCTAAAGCTTTCGTACAACTGAC-- 74
Query 61 ACACACTCCTCAAAACTTCCAAGAAAGCATCAGATCCCATTTTCCGCAATCATCTC 116
|| | || | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 75 ACTC-CT-C-CAAAACTTCCAAGAAAGCATCAGATCCCATTCTCCGCAATCATCTC 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5