BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489058
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22060.1 | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:73036... 2355 0.0
AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:1586... 1312 0.0
> AT5G22060.1 | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303622-7305797
REVERSE LENGTH=1565
Length=1565
Score = 2355 bits (1275), Expect = 0.0
Identities = 1412/1478 (96%), Gaps = 9/1478 (1%)
Strand=Plus/Plus
Query 54 TTAttttttttAGGGTTTTCGTAAG-A-AGAG-AGAAAACATGTTTGGAAGAGGACCTTC 110
||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||
Sbjct 90 TTATTTTTTTTAGGGTTTTCGTAAGAACAGAGCAAAAAACATGTTTGGAAGAGGACCTTC 149
Query 111 AAGGAAGAGCGATAACACCAAGTTCTACGAGATCCTTGGTGTTCCTAAGACCGCATCACC 170
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 150 AAGGAAGAGCGATAACACAAAGTTCTACGAGATCCTTGGTGTTCCTAAGACCGCAGCACC 209
Query 171 GGAAGATCTCAAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGG 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 AGAAGATCTCAAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGG 269
Query 231 AGATCCCGAAAAGTTTAAAGAGCTAGCTCAGGCTTATGAAGTTCTT-AGTGATCCTGAGA 289
||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 270 TGATCCCGAAAAGTTTAAAGAGTTAGCACAGGCTTATGAAGTT-TTAAGTGATCCTGAGA 328
Query 290 AGCGTGAGATCTATGACCAATATGGGGAGGATGCACTCAAGGAGGGAATGGGTGGTGGAA 349
|||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 329 AGCGTGAGATCTATGATCAATATGGGGAAGATGCACTCAAGGAAGGAATGGGTGGTGGAG 388
Query 350 GCGGTGGGCACGATCCGTTTGATATCTTCTCTTCCTTCTTTGGTGGTGGTGGAAACCCAT 409
| ||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 389 GTGGTGGACACGATCCATTTGATATCTTCTCTTCCTTCTTTGGTAGTGGTGGACACCCAT 448
Query 410 TCGGAGGTCATAGCCGGAGAAGAAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCCTGA 469
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 449 TCGGAAGTCATAGCCGGGGAAGGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCTTGA 508
Query 470 AGGTTTCCTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 AGGTTTCCTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGG 568
Query 530 TTTTGTGCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTG 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CTTTGTGCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTG 628
Query 590 GCTGTCAAGGTTCGGGAATGAAGGTCTCGATCAGGCAGGTTGGACCTGGAATGATTCAGC 649
||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 629 GCTGTCAAGGTTCGGGAATGAAGATCTCGATCAGGCAGTTTGGACCTGGAATGATGCAGC 688
Query 650 AGATGCAGCATGCTTGTAATGATTGCAAGGGCACAGGAGAGACCATCAATGATCGGGACA 709
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 689 AGGTGCAGCATGCTTGTAATGATTGCAAAGGCACAGGAGAGACCATCAATGATCGGGACA 748
Query 710 GGTGTCCACAATGCAAAGCAGAGAAGGTTGTTTCCGAGAAGAAGGTGCTTGAAGTAAATG 769
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 749 GGTGTCCACAATGCAAAGGAGAGAAGGTTGTCTCTGAGAAGAAGGTGCTTGAAGTAAATG 808
Query 770 TGGAGAAGGGAATGCAACACAATCAGAAGATCACGTTCAATGGACAAGCAGATGAAGCGC 829
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 809 TGGAGAAGGGAATGCAACACAATCAGAAGATCACATTCAGTGGACAAGCCGATGAAGCGC 868
Query 830 CTGATACTGTTACCGGAGATATAGTGTTCGTCATTCAGCAGAAGGAGCACCCAAAGTTCA 889
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 869 CTGATACTGTCACCGGAGATATAGTGTTTGTCATTCAGCAGAAGGAGCACCCAAAGTTCA 928
Query 890 AAAGAAAGGGGGATGATCTCTTTGTGGAGCACACCCTCTCTCTAACCGAGGCCTTGTGTG 949
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 929 AAAGAAAGGGTGAGGATCTCTTTGTGGAGCACACCATCTCTCTAACCGAGGCCTTGTGTG 988
Query 950 GCTTCCAGTTTGTTTTGACCCATTTGGACAAAAGGCAGCTTCTCATCAAATCCAATCCCG 1009
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 989 GCTTCCAGTTTGTCTTGACCCATTTGGACAAAAGACAGCTTCTCATCAAATCCAAGCCCG 1048
Query 1010 GAGAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GAGAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACC 1108
Query 1070 AAAGGCCGTTCATGAAGGGTAAGCTATACATCCACTTCACTGTTGAGTTCCCGGATTCGC 1129
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct 1109 AAAGGCCGTTCATGAAGGGTAAGCTATACATTCACTTCACGGTTGAATTCCCGGAATCGC 1168
Query 1130 TGAGCCCAGATCAGACAAAGGCCATTGAAGCAGTTTTGCCAAAGCCGACCAAGGCAGCTA 1189
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1169 TGAGCCCGGATCAGACAAAGGCCATTGAAGCAGTTTTGCCAAAGCCAACCAAGGCAGCTA 1228
Query 1190 TAAGTGATATGGAAATAGACGAGTGCGAAGAGACGACTCTGCATGATGTGAACATTGAGG 1249
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1229 TAAGCGATATGGAAATAGACGACTGCGAAGAGACGACTCTGCATGATGTGAACATTGAGG 1288
Query 1250 ATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGACGATGAGGATGAAC 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1289 ATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGACGATGAGGAAGATC 1348
Query 1310 ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGTGATCCACATGCGCATCTTAGT 1369
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1349 ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGTGATCAACATGCGCATCTTAGT 1408
Query 1370 GATCCCCAACAtttgcttct-tcttttctctttttcgttgtattatttttgggtcttttt 1428
|||| |||| |||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1409 GATCTCCAATATTTGCTTCTGTCTTTTCTCCTTTTCATTGTATTATTTTTGGGTCTTTTT 1468
Query 1429 atagactttgCCAATTCAGTGGGAAGAACCTCGTCCTAATTCAAAATCCTTATCA-AC-A 1486
||||||||||||||||||||||||||||||||||||||||||||| ||||| | | || |
Sbjct 1469 ATAGACTTTGCCAATTCAGTGGGAAGAACCTCGTCCTAATTCAAA-TCCTTGTTACACCA 1527
Query 1487 ttttttttGGTTTGAGAAATAAACTTGTAGTTCTTGAG 1524
||||||||||||||||||||||||||||||||||||||
Sbjct 1528 TTTTTTTTGGTTTGAGAAATAAACTTGTAGTTCTTGAG 1565
> AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15868794-15871256
REVERSE LENGTH=1781
Length=1781
Score = 1312 bits (710), Expect = 0.0
Identities = 1116/1308 (85%), Gaps = 43/1308 (3%)
Strand=Plus/Plus
Query 64 TAGGGTTTTCGTAAGAA-GAGAGAAAACATGTTTGGAAGAGGACCTTC-AAGGAAGAGCG 121
|||||||||||| | || | | ||||| ||||| || |||||||| || || ||||||||
Sbjct 171 TAGGGTTTTCGTTACAACG-GCGAAAAGATGTTCGGTAGAGGACCCTCGAA-GAAGAGCG 228
Query 122 ATAACACCAAGTTCTACGAGATCCTT-GGTGTTCCTAAGACCGCATCACCGGAAGATCTC 180
| ||||| |||||||||||||| ||| ||||||||||||| ||| ||||| |||||||||
Sbjct 229 ACAACACTAAGTTCTACGAGAT-CTTAGGTGTTCCTAAGAGCGCTTCACCAGAAGATCTC 287
Query 181 AAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGGAGATCCCGAA 240
||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 288 AAGAAAGCTTACAAAAAAGCCGCTATCAAGAATCATCCTGATAAGGGTGGAGATCCCGAG 347
Query 241 AAGTTTAAAGAGCTAGCTCAGGCTTATGAAGTTCTTAGTGATCCTGAGAAGCGTGAGATC 300
|||||||| ||| |||| || ||||||||||| |||||||| || ||||||||||||||
Sbjct 348 AAGTTTAAGGAGTTAGCACAAGCTTATGAAGTGCTTAGTGACCCGGAGAAGCGTGAGATT 407
Query 301 TATGACCAATATGGGGAGGATGCACTCAAGGAGGGAATGGGTGGTGGAAGCGGTGGGCAC 360
|||||||| ||||| ||||||||||||||||| ||||||||||||||| | ||||| ||
Sbjct 408 TATGACCAGTATGGAGAGGATGCACTCAAGGAAGGAATGGGTGGTGGAGGAGGTGGACAT 467
Query 361 GATCCGTTTGATATCTTCTCTTCCTTCTTTGGTGGTGGTGGAAACCCATTCGGAGGTCAT 420
||||| |||||||| ||||| |||||| || |||||| || ||| || |||||| ||
Sbjct 468 GATCCATTTGATATTTTCTCATCCTTC-TT--TGGTGGAGG---CCCCTTTGGAGGTAAT 521
Query 421 ---AGCCGG-AGAAGAAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCCTGAAGGTTTC 476
|||||| | ||| ||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 522 ACCAGCCGGCA-AAGGAGGCAGAGGCGTGGTGAGGATGTTGTTCATCCCTTGAAGGTATC 580
Query 477 -CTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGGTTTTGT 535
||| |||||||| || || || |||| |||||||| |||||||||||||| | | | |
Sbjct 581 TCTT-GAGGATGTGTACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCT 639
Query 536 GCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTGGCTGTC 595
|||| ||||||||||| ||||| ||||| |||||||| || |||||||||| || ||||
Sbjct 640 GCTCTAAGTGTAACGGAAAGGGATCAAAATCTGGAGCCTCCTTGAAATGTGGAGGGTGTC 699
Query 596 AAGGTTCGGGAATGAAGGTCTCGATCAGGCAGGTTGGACCTGGAATGATTCAGCAGATGC 655
| || || || |||||||| || || |||||| |||||||||||||||| ||||||||||
Sbjct 700 AGGGATCTGGTATGAAGGTGTCTATTAGGCAGCTTGGACCTGGAATGATCCAGCAGATGC 759
Query 656 AGCATGCTTGTAATGATTGC-AAGGGCACAGGAGAGACCATCAATGATCGGGACAGGTGT 714
||||||| |||||||| ||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 760 AGCATGCATGTAATGAATGCAAAGGG-ACAGGTGAGACCATCAATGATCGGGACAGGTGT 818
Query 715 CCACAATGCAAAGCAGAGAAGGTTGTTTCC-GAGAAGAAGGTGCTTGAAGTAAATGTGGA 773
||||||||||||| ||| ||||| || || |||||||||||||||||||| ||||||||
Sbjct 819 CCACAATGCAAAGGAGACAAGGTCATT-CCTGAGAAGAAGGTGCTTGAAGTGAATGTGGA 877
Query 774 GAAGGGAATGCAACACAATCAGAAGATCACGTTC-AATGGACAAGCAGATGAAGCGCCTG 832
||||||||||||||||| |||||||||||| || || ||||||||||||||||||||||
Sbjct 878 GAAGGGAATGCAACACAGTCAGAAGATCACATTTGAA-GGACAAGCAGATGAAGCGCCTG 936
Query 833 ATACTGTTACCGGAGATATAGTGTTCGTCATTCAGCAGAAGGAGCACCCAAAGTTCAAAA 892
| ||||| || |||||||||||||| ||| |||||||||| ||||||||||||||||| |
Sbjct 937 ACACTGTCACTGGAGATATAGTGTTTGTCCTTCAGCAGAAAGAGCACCCAAAGTTCAAGA 996
Query 893 GAAAGGGGGATGATCTCTTTGTGGAGCACACCCTCTCTCTAACCGAGGCCTTGTGTGGCT 952
||||||| || || ||||||||||||||||| || ||||||||||| || ||||||||||
Sbjct 997 GAAAGGGAGAAGACCTCTTTGTGGAGCACACACTTTCTCTAACCGAAGCTTTGTGTGGCT 1056
Query 953 TCCAGTTTGTTTTGACCCATTTGGACAAAAGGCAG-CTTCTCATCAAATCCAATCCCGGA 1011
|||| |||||| |||| || ||||| || || |||||||| ||||| ||||| ||
Sbjct 1057 TCCAATTTGTTCTGACTCACTTGGATGGCAGA-AGTCTTCTCATTAAATCTAATCCTGGG 1115
Query 1012 GAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACCAA 1071
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1116 GAGGTCGTGAAACCTGATTCATACAAGGCAATAAGCGATGAAGGAATGCCGATATACCAG 1175
Query 1072 AGGCCGTTCATGAAGGGTAAGCTATACATCCACTTCACTGTTGAGTTCCCGGATTCGCTG 1131
||||| ||||||||||||||||| |||||||||||||| || ||||||||||| ||| ||
Sbjct 1176 AGGCCATTCATGAAGGGTAAGCTCTACATCCACTTCACAGTGGAGTTCCCGGACTCGTTG 1235
Query 1132 AGCCCAGATCAGAC-AAAGGCCATTG-AAGCAGTTTTGCCAAAGCCGACCAAGGCAGCT- 1188
|||||||||||||| |||| | | || |||| ||| | || |||||| | || |||||
Sbjct 1236 AGCCCAGATCAGACCAAAG-C-ACTGGAAGCTGTTCTACCTAAGCCGTC-AA--CAGCTC 1290
Query 1189 A-TA-AGTGATATGGAAATAGACGAGTGCGAAGAGACGACTCTGCATGATGTGAACATTG 1246
| | ||||| ||||| ||||| || ||||| ||||| || || || ||||| |||||||
Sbjct 1291 AGTTGAGTGACATGGAGATAGATGAATGCGAGGAGACCACGCTCCACGATGTCAACATTG 1350
Query 1247 AGGATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGA---CGATGAGG 1303
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 1351 AGGATGAGATGAGGAGGAAGGCACAAGCTCAAAGAGAGGCTTATGATGATGACGATGAAG 1410
Query 1304 ATGA--AC-ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGT 1348
|||| || | || || |||||||| | |||||||||||||||||||
Sbjct 1411 ATGATGACCATCCGGGTGGTGCTCAAAGGGTGCAATGTGCCCAGCAGT 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5